Wall clock time and date at job start Sun Mar 29 2020 22:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 C 1.52994 * 109.47167 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47134 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00229 * 189.99843 * 5 4 3 7 7 C 1.53007 * 109.47043 * 76.34167 * 6 5 4 8 8 O 1.42894 * 109.47150 * 65.09115 * 7 6 5 9 9 C 1.42902 * 113.99782 * 184.81139 * 8 7 6 10 10 C 1.50708 * 109.46903 * 175.19488 * 9 8 7 11 11 H 1.08000 * 119.99798 * 4.86971 * 10 9 8 12 12 C 1.37876 * 119.99804 * 184.87338 * 10 9 8 13 13 N 1.31519 * 119.99858 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 120.00056 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47032 * 59.99788 * 14 12 10 16 16 H 1.48498 * 109.47098 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47061 * 300.00030 * 14 12 10 18 18 C 1.46901 * 111.00029 * 66.04878 * 5 4 3 19 19 C 1.53003 * 117.49912 * 256.48398 * 18 5 4 20 20 C 1.52996 * 60.00064 * 252.50682 * 19 18 5 21 21 H 1.08993 * 109.46976 * 299.99681 * 1 2 3 22 22 H 1.09000 * 109.47113 * 60.00143 * 1 2 3 23 23 H 1.09002 * 109.46538 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.46899 * 240.00328 * 2 1 3 25 25 H 1.08996 * 109.47296 * 120.00326 * 2 1 3 26 26 H 1.08994 * 109.47172 * 59.99799 * 3 2 1 27 27 H 1.09008 * 109.46669 * 300.00455 * 3 2 1 28 28 H 1.09003 * 109.46997 * 60.00242 * 4 3 2 29 29 H 1.08996 * 109.47154 * 300.00267 * 4 3 2 30 30 H 1.09001 * 109.47458 * 316.34028 * 6 5 4 31 31 H 1.09004 * 109.47153 * 196.33784 * 6 5 4 32 32 H 1.08996 * 109.47004 * 185.09560 * 7 6 5 33 33 H 1.08998 * 109.46421 * 305.09189 * 7 6 5 34 34 H 1.09006 * 109.47188 * 295.19209 * 9 8 7 35 35 H 1.08992 * 109.47395 * 55.19566 * 9 8 7 36 36 H 0.97000 * 119.99798 * 180.02562 * 13 12 10 37 37 H 1.08997 * 115.55035 * 42.18356 * 18 5 4 38 38 H 1.09001 * 117.49522 * 359.97438 * 19 18 5 39 39 H 1.08995 * 117.50343 * 145.01532 * 19 18 5 40 40 H 1.09003 * 117.49717 * 252.51236 * 20 19 18 41 41 H 1.08999 * 117.52013 * 107.47964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 -0.0013 6 6 5.5084 2.8736 -0.2400 7 6 5.7887 2.6304 -1.7244 8 8 5.2462 3.7053 -2.4939 9 6 5.3582 3.5230 -3.9068 10 6 4.6539 4.6508 -4.6162 11 1 4.2375 5.4696 -4.0482 12 6 4.5412 4.6373 -5.9903 13 7 5.0487 3.6404 -6.6819 14 14 3.6676 6.0348 -6.8696 15 1 4.3636 7.3141 -6.5793 16 1 3.6825 5.7848 -8.3333 17 1 2.2628 6.1168 -6.3952 18 6 3.7108 3.5098 1.2520 19 6 2.5479 4.5035 1.2154 20 6 3.9855 5.0124 1.3386 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8899 27 1 1.6766 1.9563 -0.8900 28 1 3.9330 0.9289 -0.8909 29 1 3.9337 0.9286 0.8891 30 1 5.9993 2.1023 0.3536 31 1 5.8929 3.8524 0.0467 32 1 6.8651 2.5745 -1.8865 33 1 5.3257 1.6930 -2.0326 34 1 6.4108 3.5167 -4.1900 35 1 4.9005 2.5747 -4.1882 36 1 4.9697 3.6310 -7.6486 37 1 3.8416 2.9211 2.1600 38 1 2.0421 4.6512 0.2612 39 1 1.9135 4.5686 2.0992 40 1 4.2968 5.4123 2.3037 41 1 4.4256 5.4947 0.4658 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395438007.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:46:27 Heat of formation + Delta-G solvation = -55.951630 kcal Electronic energy + Delta-G solvation = -17754.946733 eV Core-core repulsion = 15055.413662 eV Total energy + Delta-G solvation = -2699.533070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.87826 -38.26441 -36.32621 -35.12577 -34.48396 -31.10471 -29.37823 -28.05436 -24.51771 -24.40331 -23.39586 -22.71979 -21.93938 -20.96371 -18.60752 -17.50182 -17.34537 -16.80218 -16.40975 -16.28177 -15.60856 -15.50393 -14.81469 -14.75402 -14.02300 -13.96053 -13.84057 -13.46557 -13.13383 -13.00847 -12.85313 -12.65283 -12.37703 -12.29080 -12.11909 -11.95909 -11.83996 -11.64888 -11.51451 -11.26956 -11.13048 -10.92148 -10.82190 -10.16274 -9.12712 -8.31377 -6.43373 1.38511 1.43781 1.52104 2.34986 2.78764 2.96636 3.01830 3.25933 3.91995 4.03085 4.10956 4.11827 4.21315 4.25970 4.32037 4.42353 4.42718 4.52227 4.66223 4.70116 4.75913 4.80715 4.84231 4.86142 4.98361 5.00109 5.01383 5.12521 5.16002 5.19770 5.30013 5.39800 5.43388 5.50608 5.55492 5.98049 6.17155 6.34058 6.57845 6.87200 7.28773 8.80915 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005662 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.854137 B = 4943.891145 C = 5400.415851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.106 4.106 4 C 0.061 3.939 5 N -0.528 5.528 6 C 0.072 3.928 7 C 0.059 3.941 8 O -0.395 6.395 9 C 0.211 3.789 10 C -0.545 4.545 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.982 3.018 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.267 1.267 18 C 0.006 3.994 19 C -0.160 4.160 20 C -0.172 4.172 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.032 0.968 34 H -0.019 1.019 35 H -0.018 1.018 36 H 0.270 0.730 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -4.770 17.951 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.144 4.144 4 C -0.066 4.066 5 N -0.253 5.253 6 C -0.056 4.056 7 C -0.018 4.018 8 O -0.314 6.314 9 C 0.136 3.864 10 C -0.582 4.582 11 H 0.077 0.923 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.804 3.196 15 H -0.189 1.189 16 H -0.198 1.198 17 H -0.192 1.192 18 C -0.102 4.102 19 C -0.198 4.198 20 C -0.210 4.210 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.051 0.949 34 H -0.002 1.002 35 H 0.000 1.000 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.160 -4.436 17.467 18.746 hybrid contribution 0.414 -0.243 -0.536 0.720 sum -4.745 -4.679 16.931 18.195 Atomic orbital electron populations 1.21743 0.95177 1.02033 1.01728 1.21478 0.96519 0.95788 1.02040 1.21489 0.93967 0.97155 1.01780 1.22147 0.96296 0.87873 1.00312 1.61561 1.13682 1.16616 1.33402 1.22010 0.88150 1.02437 0.92963 1.22596 0.96488 0.90160 0.92576 1.87881 1.81845 1.43374 1.18331 1.19762 0.93761 0.95602 0.77297 1.21331 1.37398 1.07277 0.92220 0.92348 1.25953 0.96137 0.99439 0.97639 1.70069 1.46263 1.33052 1.07716 0.85261 0.78916 0.78384 0.77011 1.18887 1.19777 1.19226 1.22439 1.05035 0.91308 0.91451 1.23029 0.91289 1.02585 1.02882 1.23035 0.99652 0.95169 1.03111 0.92071 0.93763 0.91772 0.92909 0.90808 0.91046 0.94090 0.92540 0.93268 0.91109 0.90351 0.93504 0.94931 1.00168 1.00005 0.92071 0.87912 0.90714 0.86557 0.86429 0.90675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.49 5.93 30.60 0.18 -2.31 16 3 C -0.11 -2.68 5.14 30.59 0.16 -2.52 16 4 C 0.06 1.65 4.78 86.30 0.41 2.06 16 5 N -0.53 -16.28 4.51 -870.99 -3.93 -20.20 16 6 C 0.07 2.21 5.34 86.31 0.46 2.67 16 7 C 0.06 2.34 6.14 71.98 0.44 2.78 16 8 O -0.39 -20.46 10.27 -148.98 -1.53 -21.99 16 9 C 0.21 12.47 5.69 71.24 0.41 12.87 16 10 C -0.54 -33.84 9.43 25.60 0.24 -33.60 16 11 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 12 C 0.01 0.39 5.46 84.65 0.46 0.85 16 13 N -0.93 -57.62 13.29 21.45 0.28 -57.33 16 14 Si 0.98 45.77 29.54 68.60 2.03 47.80 16 15 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 C 0.01 0.15 4.19 44.92 0.19 0.34 16 19 C -0.16 -3.86 9.81 30.59 0.30 -3.56 16 20 C -0.17 -4.21 9.58 30.59 0.29 -3.92 16 21 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.64 6.90 -2.39 -0.02 1.63 16 27 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 28 H 0.06 1.71 6.60 -2.39 -0.02 1.70 16 29 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 30 H 0.07 1.74 7.99 -2.39 -0.02 1.72 16 31 H 0.08 2.44 6.95 -2.38 -0.02 2.42 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.29 6.67 -2.39 -0.02 1.28 16 34 H -0.02 -1.18 8.14 -2.38 -0.02 -1.20 16 35 H -0.02 -1.11 8.12 -2.39 -0.02 -1.13 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 37 H 0.10 2.08 8.12 -2.39 -0.02 2.06 16 38 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 2.31 7.86 -2.39 -0.02 2.29 16 Total: -1.00 -69.10 333.33 2.06 -67.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.95 Total: 11.10 kcal Atomic # 6 Polarization: -30.67 SS G_CDS: 4.26 Total: -26.42 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -3.64 Total: -77.54 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.53 Total: -21.99 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.10 2.06 -67.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395438007.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.087 kcal (2) G-P(sol) polarization free energy of solvation -69.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds