Wall clock time and date at job start Sun Mar 29 2020 23:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47381 * 2 1 4 4 H 1.09001 * 109.47259 * 303.56655 * 3 2 1 5 5 C 1.53000 * 109.47148 * 183.56309 * 3 2 1 6 6 N 1.46499 * 109.46968 * 179.97438 * 5 3 2 7 7 C 1.36935 * 120.00175 * 269.99945 * 6 5 3 8 8 H 1.08007 * 119.99798 * 143.53823 * 7 6 5 9 9 C 1.38806 * 120.00324 * 323.53958 * 7 6 5 10 10 N 1.31619 * 120.00245 * 155.87898 * 9 7 6 11 11 Si 1.86807 * 119.99595 * 335.87578 * 9 7 6 12 12 H 1.48502 * 109.46811 * 95.34030 * 11 9 7 13 13 H 1.48503 * 109.46941 * 215.33518 * 11 9 7 14 14 H 1.48494 * 109.47225 * 335.34170 * 11 9 7 15 15 C 1.46509 * 119.99914 * 90.00042 * 6 5 3 16 16 C 1.55237 * 110.58172 * 233.38900 * 15 6 5 17 17 C 1.54885 * 102.59011 * 203.33863 * 16 15 6 18 18 C 1.54272 * 104.30871 * 37.93245 * 17 16 15 19 19 C 1.53871 * 106.60168 * 336.32408 * 18 17 16 20 20 O 1.42904 * 109.47051 * 63.56430 * 3 2 1 21 21 C 1.42900 * 113.99875 * 257.30789 * 20 3 2 22 22 H 1.09000 * 109.47182 * 54.37902 * 1 2 3 23 23 H 1.09006 * 109.47616 * 174.38587 * 1 2 3 24 24 H 1.08999 * 109.47427 * 294.38149 * 1 2 3 25 25 H 1.09002 * 109.46955 * 239.99548 * 2 1 3 26 26 H 1.09003 * 109.47291 * 120.00146 * 2 1 3 27 27 H 1.09001 * 109.47343 * 60.00420 * 5 3 2 28 28 H 1.09001 * 109.47298 * 299.99750 * 5 3 2 29 29 H 0.97009 * 119.99704 * 179.97438 * 10 9 7 30 30 H 1.08997 * 110.43044 * 355.97991 * 15 6 5 31 31 H 1.08997 * 110.89571 * 85.04711 * 16 15 6 32 32 H 1.09003 * 110.76786 * 321.57373 * 16 15 6 33 33 H 1.09003 * 110.48680 * 279.19335 * 17 16 15 34 34 H 1.08999 * 110.48767 * 156.67837 * 17 16 15 35 35 H 1.09005 * 110.03002 * 95.61561 * 18 17 16 36 36 H 1.09002 * 110.03027 * 216.98476 * 18 17 16 37 37 H 1.08998 * 110.03214 * 119.28537 * 19 18 17 38 38 H 1.09000 * 110.03481 * 240.66462 * 19 18 17 39 39 H 1.08999 * 109.46875 * 174.73793 * 21 20 3 40 40 H 1.09007 * 109.47088 * 294.73636 * 21 20 3 41 41 H 1.08996 * 109.47322 * 54.73782 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6254 1.9744 -0.8563 5 6 3.5673 1.4433 -0.0896 6 7 4.0557 2.8245 -0.0903 7 6 4.2144 3.4941 -1.2741 8 1 3.9931 4.5497 -1.3314 9 6 4.6597 2.8163 -2.4006 10 7 4.3768 3.2771 -3.6006 11 14 5.6605 1.2501 -2.2134 12 1 4.7596 0.0731 -2.3053 13 1 6.6774 1.1805 -3.2933 14 1 6.3398 1.2516 -0.8930 15 6 4.3742 3.4894 1.1758 16 6 3.6199 4.8417 1.2869 17 6 4.4922 5.6332 2.2927 18 6 5.9404 5.2452 1.9292 19 6 5.8654 3.8823 1.2190 20 8 1.6333 2.0915 1.2064 21 6 0.5230 2.9764 1.0445 22 1 -0.3633 0.5985 -0.8354 23 1 -0.3634 -1.0228 -0.1005 24 1 -0.3634 0.4242 0.9360 25 1 1.8932 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 3.8776 0.9483 -1.0099 28 1 3.9819 0.9114 0.7667 29 1 4.6884 2.8035 -4.3879 30 1 4.1252 2.8437 2.0179 31 1 2.6140 4.6946 1.6801 32 1 3.5884 5.3471 0.3216 33 1 4.2623 5.3336 3.3153 34 1 4.3414 6.7053 2.1672 35 1 6.3702 5.9915 1.2609 36 1 6.5432 5.1633 2.8337 37 1 6.2587 3.9669 0.2060 38 1 6.4322 3.1381 1.7784 39 1 0.2166 3.3570 2.0189 40 1 0.8126 3.8093 0.4037 41 1 -0.3072 2.4380 0.5874 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397107076.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:07:36 Heat of formation + Delta-G solvation = -40.703694 kcal Electronic energy + Delta-G solvation = -19181.217867 eV Core-core repulsion = 16482.345997 eV Total energy + Delta-G solvation = -2698.871870 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.35836 -37.19147 -34.37245 -32.76783 -31.37062 -28.67966 -27.86419 -26.63621 -25.59604 -23.80128 -21.85227 -20.57617 -19.76376 -18.93177 -16.43119 -16.25778 -15.46225 -15.22176 -14.69485 -14.38552 -14.11790 -13.51676 -13.19944 -12.77901 -12.63163 -12.49632 -12.31780 -12.03305 -11.60605 -11.36620 -10.99412 -10.86113 -10.76403 -10.50590 -10.43188 -10.41754 -10.24226 -10.13856 -9.87021 -9.80136 -9.60254 -9.33425 -8.86689 -8.41285 -6.68833 -5.97399 -3.33356 3.30649 3.48412 3.55177 4.46476 4.54609 4.92444 5.28888 5.37951 5.44745 5.47624 5.50042 5.54519 5.69964 5.75363 5.87854 6.04361 6.13862 6.16714 6.22701 6.23251 6.27379 6.28722 6.31812 6.33961 6.40936 6.52222 6.54764 6.57232 6.61743 6.67312 6.81481 6.83997 7.07075 7.17473 7.30314 7.91171 8.11178 8.45725 9.07814 9.77973 10.22075 11.18614 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.012863 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.032578 B = 2176.204986 C = 3353.491882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.144 4.144 3 C 0.073 3.927 4 H 0.067 0.933 5 C 0.138 3.862 6 N -0.593 5.593 7 C -0.256 4.256 8 H 0.081 0.919 9 C 0.034 3.966 10 N -0.900 5.900 11 Si 0.867 3.133 12 H -0.287 1.287 13 H -0.303 1.303 14 H -0.267 1.267 15 C 0.184 3.816 16 C -0.129 4.129 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.142 4.142 20 O -0.375 6.375 21 C 0.035 3.965 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.048 0.952 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.070 0.930 40 H 0.043 0.957 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.349 -1.915 9.616 10.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.182 4.182 3 C 0.012 3.988 4 H 0.085 0.915 5 C 0.012 3.988 6 N -0.313 5.313 7 C -0.385 4.385 8 H 0.099 0.901 9 C -0.166 4.166 10 N -0.542 5.542 11 Si 0.697 3.303 12 H -0.215 1.215 13 H -0.231 1.231 14 H -0.192 1.192 15 C 0.077 3.923 16 C -0.168 4.168 17 C -0.161 4.161 18 C -0.156 4.156 19 C -0.181 4.181 20 O -0.293 6.293 21 C -0.062 4.062 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.212 -1.953 9.600 10.664 hybrid contribution 0.442 -0.865 -0.383 1.044 sum -3.770 -2.818 9.217 10.349 Atomic orbital electron populations 1.21775 0.96360 1.00848 1.01554 1.22003 0.95862 0.98429 1.01951 1.22948 0.97918 0.90669 0.87241 0.91456 1.21409 0.90427 0.87580 0.99435 1.44089 1.73886 1.10776 1.02503 1.18707 1.38948 0.95732 0.85072 0.90146 1.25447 0.98332 0.97592 0.95234 1.69894 1.45699 1.41211 0.97373 0.87084 0.81418 0.84228 0.77576 1.21537 1.23109 1.19191 1.21197 0.90982 0.92325 0.87835 1.22870 0.97588 0.97555 0.98780 1.22285 0.95879 0.99090 0.98863 1.22031 0.96434 0.98090 0.99048 1.22641 0.99562 0.94812 1.01115 1.87806 1.49180 1.59859 1.32487 1.22722 0.88987 0.93455 1.01024 0.93052 0.93394 0.92605 0.91557 0.91807 0.91965 0.93854 0.92866 0.92308 0.92730 0.90792 0.92771 0.92929 0.92617 0.93363 0.90340 0.93875 0.91192 0.93875 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.68 37.15 0.32 -1.73 16 2 C -0.14 -2.33 5.65 -26.74 -0.15 -2.49 16 3 C 0.07 1.39 2.55 -26.73 -0.07 1.33 16 4 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 5 C 0.14 2.99 4.22 -4.04 -0.02 2.98 16 6 N -0.59 -13.72 2.05 -163.56 -0.34 -14.06 16 7 C -0.26 -6.85 8.45 -15.06 -0.13 -6.97 16 8 H 0.08 2.34 6.54 -52.48 -0.34 2.00 16 9 C 0.03 0.95 5.28 -17.43 -0.09 0.86 16 10 N -0.90 -26.90 13.97 55.49 0.78 -26.12 16 11 Si 0.87 21.85 25.13 -169.99 -4.27 17.57 16 12 H -0.29 -7.00 6.64 56.52 0.38 -6.63 16 13 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.18 3.74 2.82 -66.08 -0.19 3.55 16 16 C -0.13 -2.42 6.42 -24.55 -0.16 -2.57 16 17 C -0.12 -1.96 6.82 -25.07 -0.17 -2.13 16 18 C -0.12 -1.95 6.80 -25.61 -0.17 -2.12 16 19 C -0.14 -2.78 6.43 -25.61 -0.16 -2.94 16 20 O -0.37 -6.85 9.41 -35.23 -0.33 -7.18 16 21 C 0.04 0.55 9.83 101.05 0.99 1.54 16 22 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.75 6.93 -51.93 -0.36 0.39 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 27 H 0.06 1.46 3.26 -51.93 -0.17 1.29 16 28 H 0.04 0.89 7.98 -51.93 -0.41 0.47 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.06 1.17 7.89 -51.93 -0.41 0.76 16 31 H 0.05 0.98 7.55 -51.93 -0.39 0.59 16 32 H 0.07 1.57 6.29 -51.93 -0.33 1.24 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.76 7.19 -51.93 -0.37 1.39 16 38 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.74 8.08 -51.93 -0.42 0.32 16 41 H 0.03 0.46 6.24 -51.93 -0.32 0.13 16 LS Contribution 310.67 15.07 4.68 4.68 Total: -1.00 -28.52 310.67 -6.79 -35.32 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.32 Total: 0.49 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 0.01 Total: -10.70 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.44 Total: -40.18 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.33 Total: -7.18 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.27 Total: 17.57 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.52 -6.79 -35.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397107076.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.388 kcal (2) G-P(sol) polarization free energy of solvation -28.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds