Wall clock time and date at job start Sun Mar 29 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46699 * 2 1 4 4 H 1.09004 * 109.47773 * 304.69104 * 3 2 1 5 5 C 1.53004 * 109.46890 * 184.69400 * 3 2 1 6 6 N 1.46903 * 109.46975 * 180.21883 * 5 3 2 7 7 C 1.46853 * 110.99554 * 170.08830 * 6 5 3 8 8 C 1.53037 * 109.51889 * 185.84324 * 7 6 5 9 9 C 1.53122 * 109.27922 * 300.81403 * 8 7 6 10 10 C 1.50696 * 109.57488 * 177.59212 * 9 8 7 11 11 H 1.08002 * 120.00202 * 240.28810 * 10 9 8 12 12 C 1.37879 * 119.99969 * 60.29029 * 10 9 8 13 13 N 1.31519 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00113 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47036 * 59.99858 * 14 12 10 16 16 H 1.48502 * 109.47410 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47148 * 299.99824 * 14 12 10 18 18 C 1.53121 * 109.15698 * 57.65759 * 9 8 7 19 19 C 1.46845 * 111.00297 * 294.29426 * 6 5 3 20 20 O 1.42896 * 109.47391 * 64.69905 * 3 2 1 21 21 C 1.42905 * 113.99926 * 252.51654 * 20 3 2 22 22 H 1.08998 * 109.47624 * 58.80755 * 1 2 3 23 23 H 1.09000 * 109.47240 * 178.81163 * 1 2 3 24 24 H 1.09003 * 109.47203 * 298.80651 * 1 2 3 25 25 H 1.08995 * 109.46892 * 240.00080 * 2 1 3 26 26 H 1.09001 * 109.47204 * 119.99932 * 2 1 3 27 27 H 1.09008 * 109.47081 * 60.22193 * 5 3 2 28 28 H 1.08997 * 109.47120 * 300.22141 * 5 3 2 29 29 H 1.09005 * 109.45956 * 305.84918 * 7 6 5 30 30 H 1.08995 * 109.46783 * 65.82451 * 7 6 5 31 31 H 1.09002 * 109.50364 * 180.87480 * 8 7 6 32 32 H 1.08997 * 109.54357 * 60.78047 * 8 7 6 33 33 H 1.08996 * 109.52551 * 297.75662 * 9 8 7 34 34 H 0.97002 * 119.99491 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.50395 * 182.40313 * 18 9 8 36 36 H 1.09006 * 109.53344 * 62.30346 * 18 9 8 37 37 H 1.08999 * 109.46194 * 294.18056 * 19 6 5 38 38 H 1.09002 * 109.45853 * 54.15642 * 19 6 5 39 39 H 1.09004 * 109.47245 * 64.70395 * 21 20 3 40 40 H 1.08999 * 109.47477 * 184.70523 * 21 20 3 41 41 H 1.09003 * 109.46946 * 304.70206 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9801 -0.8450 5 6 3.5654 1.4442 -0.1181 6 7 4.0554 2.8291 -0.1128 7 6 5.5180 2.8692 0.0121 8 6 5.9789 4.3210 0.1605 9 6 5.5305 5.1216 -1.0653 10 6 5.9294 6.5652 -0.8990 11 1 5.1736 7.3367 -0.8903 12 6 7.2591 6.9012 -0.7580 13 7 8.1794 5.9617 -0.7682 14 14 7.7536 8.6908 -0.5526 15 1 7.1124 9.2446 0.6670 16 1 9.2298 8.7845 -0.4211 17 1 7.3117 9.4659 -1.7397 18 6 4.0084 5.0235 -1.2003 19 6 3.6046 3.5514 -1.3092 20 8 1.6558 2.0835 1.2180 21 6 0.6141 3.0495 1.0630 22 1 -0.3634 0.5322 -0.8791 23 1 -0.3634 -1.0274 -0.0213 24 1 -0.3634 0.4952 0.9005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8583 0.9587 -1.0490 28 1 3.9956 0.9033 0.7248 29 1 5.8233 2.2997 0.8900 30 1 5.9707 2.4337 -0.8787 31 1 7.0658 4.3517 0.2375 32 1 5.5382 4.7534 1.0587 33 1 6.0024 4.7139 -1.9593 34 1 9.1149 6.1981 -0.6693 35 1 3.6873 5.5561 -2.0955 36 1 3.5355 5.4667 -0.3238 37 1 4.0662 3.1126 -2.1938 38 1 2.5201 3.4775 -1.3909 39 1 -0.2995 2.5500 0.7405 40 1 0.4379 3.5498 2.0152 41 1 0.9093 3.7854 0.3151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397162348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:23 Heat of formation + Delta-G solvation = -61.674309 kcal Electronic energy + Delta-G solvation = -18413.504083 eV Core-core repulsion = 15713.722858 eV Total energy + Delta-G solvation = -2699.781224 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.97150 -37.37741 -34.05698 -33.13452 -31.31739 -29.82151 -28.47674 -26.20585 -25.20719 -23.08286 -22.21130 -21.25112 -20.45321 -18.53309 -16.68408 -16.34168 -15.59463 -15.25311 -14.54732 -14.27104 -14.12033 -13.87059 -13.32844 -13.11336 -12.88369 -12.46414 -12.35426 -12.09191 -11.94510 -11.64033 -11.28898 -11.19579 -10.98414 -10.87599 -10.69254 -10.46423 -10.41514 -10.14766 -9.91335 -9.38682 -9.24102 -8.87818 -8.66195 -8.24473 -7.62644 -5.92903 -3.98158 3.35663 3.40038 3.42938 3.98177 4.37403 4.48926 4.93457 5.03835 5.07532 5.31722 5.37137 5.41654 5.55075 5.60537 5.67505 5.73390 5.81219 5.83749 5.87075 5.95751 6.01252 6.05413 6.15438 6.23767 6.28036 6.38191 6.66426 6.67653 6.89829 7.12874 7.23507 7.43923 7.51699 7.68307 7.79160 7.89470 8.10846 8.21496 8.53200 9.05192 9.65878 11.13244 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047485 B = 0.005159 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.517792 B = 5425.747677 C = 5685.972363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.140 4.140 3 C 0.094 3.906 4 H 0.061 0.939 5 C 0.049 3.951 6 N -0.526 5.526 7 C 0.059 3.941 8 C -0.103 4.103 9 C 0.049 3.951 10 C -0.510 4.510 11 H 0.053 0.947 12 C 0.061 3.939 13 N -0.892 5.892 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.105 4.105 19 C 0.058 3.942 20 O -0.365 6.365 21 C 0.034 3.966 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.019 0.981 34 H 0.259 0.741 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.053 0.947 39 H 0.032 0.968 40 H 0.079 0.921 41 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.456 -10.274 0.770 16.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.035 3.965 4 H 0.079 0.921 5 C -0.080 4.080 6 N -0.251 5.251 7 C -0.068 4.068 8 C -0.142 4.142 9 C 0.030 3.970 10 C -0.549 4.549 11 H 0.071 0.929 12 C -0.140 4.140 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.143 4.143 19 C -0.070 4.070 20 O -0.283 6.283 21 C -0.062 4.062 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.050 0.950 40 H 0.098 0.902 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.353 -10.094 1.368 16.011 hybrid contribution 0.532 0.600 -0.867 1.181 sum -11.821 -9.494 0.502 15.169 Atomic orbital electron populations 1.21774 0.95793 1.01459 1.01819 1.21935 0.96288 0.97024 1.02545 1.22201 0.94459 0.92201 0.87624 0.92142 1.22319 0.94078 0.91292 1.00283 1.61927 1.12308 1.11692 1.39145 1.22260 0.85348 1.00700 0.98517 1.21648 1.02832 0.90136 0.99536 1.18670 0.88879 0.95300 0.94144 1.21175 0.91988 0.92343 1.49350 0.92861 1.24965 0.96706 0.97020 0.95295 1.69874 1.00614 1.31908 1.50771 0.86699 0.77226 0.85658 0.78629 1.20311 1.21384 1.20413 1.21664 1.00265 0.92176 1.00194 1.22172 0.97988 0.96710 0.90121 1.87922 1.54984 1.55229 1.30211 1.22779 0.89539 0.91627 1.02304 0.93119 0.92836 0.92214 0.91316 0.91090 0.94641 0.90585 0.92644 0.96175 0.89037 0.93786 0.96257 0.93087 0.93404 0.92528 0.96037 0.92908 0.94975 0.90200 0.93805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.20 37.16 0.34 -1.08 16 2 C -0.14 -1.50 5.64 -26.73 -0.15 -1.65 16 3 C 0.09 1.25 2.12 -26.73 -0.06 1.20 16 4 H 0.06 0.80 5.89 -51.93 -0.31 0.50 16 5 C 0.05 0.74 4.65 -3.82 -0.02 0.73 16 6 N -0.53 -9.78 4.52 -234.66 -1.06 -10.84 16 7 C 0.06 1.20 5.46 -3.83 -0.02 1.18 16 8 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 9 C 0.05 1.23 2.16 -91.65 -0.20 1.04 16 10 C -0.51 -14.25 8.56 -34.44 -0.29 -14.54 16 11 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.71 5.31 -17.82 -0.09 1.61 16 13 N -0.89 -25.74 11.37 55.43 0.63 -25.11 16 14 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 C -0.11 -2.26 5.32 -26.65 -0.14 -2.41 16 19 C 0.06 1.07 5.29 -3.84 -0.02 1.05 16 20 O -0.37 -5.48 9.84 -35.23 -0.35 -5.82 16 21 C 0.03 0.43 10.45 101.05 1.06 1.48 16 22 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.59 6.73 -51.93 -0.35 0.24 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.51 8.12 -51.92 -0.42 0.09 16 28 H 0.08 1.15 7.99 -51.93 -0.41 0.73 16 29 H 0.06 1.06 8.02 -51.93 -0.42 0.64 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 32 H 0.04 1.11 8.14 -51.93 -0.42 0.68 16 33 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.86 6.09 -51.93 -0.32 0.55 16 39 H 0.03 0.33 6.65 -51.93 -0.35 -0.01 16 40 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.57 7.93 -51.93 -0.41 0.16 16 LS Contribution 315.09 15.07 4.75 4.75 Total: -1.00 -29.10 315.09 -8.28 -37.38 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.49 Total: -2.84 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 0.27 Total: -14.04 kcal Atomic # 7 Polarization: -35.52 SS G_CDS: -0.43 Total: -35.95 kcal Atomic # 8 Polarization: -5.48 SS G_CDS: -0.35 Total: -5.82 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.10 -8.28 -37.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397162348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.293 kcal (2) G-P(sol) polarization free energy of solvation -29.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds