Wall clock time and date at job start Sun Mar 29 2020 23:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46699 * 2 1 4 4 H 1.09004 * 109.47773 * 304.69104 * 3 2 1 5 5 C 1.53004 * 109.46890 * 184.69400 * 3 2 1 6 6 N 1.46903 * 109.46975 * 180.21883 * 5 3 2 7 7 C 1.46853 * 110.99554 * 170.08830 * 6 5 3 8 8 C 1.53037 * 109.51889 * 185.84324 * 7 6 5 9 9 C 1.53122 * 109.27922 * 300.81403 * 8 7 6 10 10 C 1.50696 * 109.57488 * 177.59212 * 9 8 7 11 11 H 1.08002 * 120.00202 * 240.28810 * 10 9 8 12 12 C 1.37879 * 119.99969 * 60.29029 * 10 9 8 13 13 N 1.31519 * 119.99849 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00113 * 179.97438 * 12 10 9 15 15 H 1.48504 * 109.47036 * 59.99858 * 14 12 10 16 16 H 1.48502 * 109.47410 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.47148 * 299.99824 * 14 12 10 18 18 C 1.53121 * 109.15698 * 57.65759 * 9 8 7 19 19 C 1.46845 * 111.00297 * 294.29426 * 6 5 3 20 20 O 1.42896 * 109.47391 * 64.69905 * 3 2 1 21 21 C 1.42905 * 113.99926 * 252.51654 * 20 3 2 22 22 H 1.08998 * 109.47624 * 58.80755 * 1 2 3 23 23 H 1.09000 * 109.47240 * 178.81163 * 1 2 3 24 24 H 1.09003 * 109.47203 * 298.80651 * 1 2 3 25 25 H 1.08995 * 109.46892 * 240.00080 * 2 1 3 26 26 H 1.09001 * 109.47204 * 119.99932 * 2 1 3 27 27 H 1.09008 * 109.47081 * 60.22193 * 5 3 2 28 28 H 1.08997 * 109.47120 * 300.22141 * 5 3 2 29 29 H 1.09005 * 109.45956 * 305.84918 * 7 6 5 30 30 H 1.08995 * 109.46783 * 65.82451 * 7 6 5 31 31 H 1.09002 * 109.50364 * 180.87480 * 8 7 6 32 32 H 1.08997 * 109.54357 * 60.78047 * 8 7 6 33 33 H 1.08996 * 109.52551 * 297.75662 * 9 8 7 34 34 H 0.97002 * 119.99491 * 179.97438 * 13 12 10 35 35 H 1.09003 * 109.50395 * 182.40313 * 18 9 8 36 36 H 1.09006 * 109.53344 * 62.30346 * 18 9 8 37 37 H 1.08999 * 109.46194 * 294.18056 * 19 6 5 38 38 H 1.09002 * 109.45853 * 54.15642 * 19 6 5 39 39 H 1.09004 * 109.47245 * 64.70395 * 21 20 3 40 40 H 1.08999 * 109.47477 * 184.70523 * 21 20 3 41 41 H 1.09003 * 109.46946 * 304.70206 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6096 1.9801 -0.8450 5 6 3.5654 1.4442 -0.1181 6 7 4.0554 2.8291 -0.1128 7 6 5.5180 2.8692 0.0121 8 6 5.9789 4.3210 0.1605 9 6 5.5305 5.1216 -1.0653 10 6 5.9294 6.5652 -0.8990 11 1 5.1736 7.3367 -0.8903 12 6 7.2591 6.9012 -0.7580 13 7 8.1794 5.9617 -0.7682 14 14 7.7536 8.6908 -0.5526 15 1 7.1124 9.2446 0.6670 16 1 9.2298 8.7845 -0.4211 17 1 7.3117 9.4659 -1.7397 18 6 4.0084 5.0235 -1.2003 19 6 3.6046 3.5514 -1.3092 20 8 1.6558 2.0835 1.2180 21 6 0.6141 3.0495 1.0630 22 1 -0.3634 0.5322 -0.8791 23 1 -0.3634 -1.0274 -0.0213 24 1 -0.3634 0.4952 0.9005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 3.8583 0.9587 -1.0490 28 1 3.9956 0.9033 0.7248 29 1 5.8233 2.2997 0.8900 30 1 5.9707 2.4337 -0.8787 31 1 7.0658 4.3517 0.2375 32 1 5.5382 4.7534 1.0587 33 1 6.0024 4.7139 -1.9593 34 1 9.1149 6.1981 -0.6693 35 1 3.6873 5.5561 -2.0955 36 1 3.5355 5.4667 -0.3238 37 1 4.0662 3.1126 -2.1938 38 1 2.5201 3.4775 -1.3909 39 1 -0.2995 2.5500 0.7405 40 1 0.4379 3.5498 2.0152 41 1 0.9093 3.7854 0.3151 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397162348.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:23 Heat of formation + Delta-G solvation = -79.524590 kcal Electronic energy + Delta-G solvation = -18414.278129 eV Core-core repulsion = 15713.722858 eV Total energy + Delta-G solvation = -2700.555271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.28986 -38.75733 -35.75118 -34.28939 -33.07806 -31.52003 -29.76515 -27.62911 -26.63895 -24.54112 -23.75914 -22.71015 -21.62765 -20.35095 -18.45059 -17.67951 -16.97720 -16.52668 -16.32524 -15.65911 -15.46088 -14.98992 -14.80459 -14.53624 -14.30379 -14.09596 -13.74001 -13.44962 -13.12620 -12.96797 -12.83628 -12.76101 -12.43694 -12.21654 -12.10050 -12.04138 -11.91114 -11.74487 -11.47662 -11.35702 -10.74929 -10.66081 -10.38626 -10.23550 -9.10555 -8.07203 -6.20757 1.41608 1.43314 1.50745 2.44426 2.96906 3.03008 3.19593 3.89587 4.05958 4.15603 4.26541 4.28690 4.39254 4.45032 4.50707 4.54413 4.63363 4.65962 4.69601 4.78114 4.87163 4.90040 4.93436 4.97816 5.04416 5.09032 5.12926 5.24087 5.24960 5.34279 5.43760 5.56693 5.63316 6.00592 6.03248 6.31065 6.33334 6.41370 6.50741 6.90426 7.46854 8.97236 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047485 B = 0.005159 C = 0.004923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.517792 B = 5425.747677 C = 5685.972363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.135 4.135 3 C 0.095 3.905 4 H 0.064 0.936 5 C 0.047 3.953 6 N -0.535 5.535 7 C 0.070 3.930 8 C -0.094 4.094 9 C 0.045 3.955 10 C -0.535 4.535 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.271 1.271 18 C -0.098 4.098 19 C 0.066 3.934 20 O -0.389 6.389 21 C 0.032 3.968 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.016 0.984 31 H 0.061 0.939 32 H 0.027 0.973 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.048 0.952 37 H 0.021 0.979 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.084 0.916 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.983 -10.898 0.639 17.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.037 3.963 4 H 0.082 0.918 5 C -0.081 4.081 6 N -0.260 5.260 7 C -0.058 4.058 8 C -0.132 4.132 9 C 0.026 3.974 10 C -0.573 4.573 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.196 1.196 18 C -0.136 4.136 19 C -0.062 4.062 20 O -0.308 6.308 21 C -0.065 4.065 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.071 0.929 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.034 0.966 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.007 0.993 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -13.901 -10.726 1.235 17.601 hybrid contribution 1.005 0.787 -0.823 1.519 sum -12.896 -9.939 0.412 16.286 Atomic orbital electron populations 1.21754 0.94674 1.02434 1.01746 1.21898 0.97225 0.95096 1.03086 1.22253 0.92938 0.93844 0.87266 0.91826 1.22445 0.95568 0.89047 1.01000 1.61871 1.10684 1.14182 1.39276 1.22020 0.86984 0.97824 0.98956 1.21404 1.00777 0.92775 0.98246 1.18645 0.91445 0.94183 0.93081 1.21559 0.92392 0.93665 1.49684 0.93140 1.25746 0.96718 1.01201 0.94935 1.70015 1.00786 1.33778 1.51165 0.85686 0.76946 0.80659 0.78796 1.19781 1.20901 1.19624 1.21523 0.97232 0.94777 1.00046 1.22077 0.99614 0.94397 0.90099 1.87888 1.55910 1.55835 1.31183 1.22878 0.89831 0.91289 1.02457 0.92543 0.91428 0.92878 0.89933 0.91407 0.93303 0.90505 0.91295 0.96588 0.92085 0.95425 0.99345 0.93091 0.92858 0.93303 0.96067 0.90050 0.92763 0.89729 0.94739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.20 71.98 0.66 -1.69 16 2 C -0.13 -2.51 5.64 30.59 0.17 -2.33 16 3 C 0.10 2.30 2.12 30.59 0.06 2.37 16 4 H 0.06 1.49 5.89 -2.38 -0.01 1.48 16 5 C 0.05 1.34 4.65 86.30 0.40 1.74 16 6 N -0.54 -19.25 4.52 -896.33 -4.05 -23.30 16 7 C 0.07 2.84 5.46 86.32 0.47 3.32 16 8 C -0.09 -4.67 5.12 30.65 0.16 -4.51 16 9 C 0.04 2.34 2.16 -11.46 -0.02 2.32 16 10 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 11 H 0.05 2.82 7.74 -2.91 -0.02 2.80 16 12 C 0.01 0.70 5.31 84.65 0.45 1.15 16 13 N -0.92 -54.15 11.37 21.45 0.24 -53.91 16 14 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 18 C -0.10 -4.20 5.32 30.65 0.16 -4.04 16 19 C 0.07 2.34 5.29 86.33 0.46 2.80 16 20 O -0.39 -10.91 9.84 -148.98 -1.47 -12.37 16 21 C 0.03 0.73 10.45 113.37 1.18 1.91 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 24 H 0.05 0.91 6.73 -2.39 -0.02 0.89 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.27 8.12 -2.38 -0.02 1.25 16 28 H 0.08 2.17 7.99 -2.39 -0.02 2.15 16 29 H 0.07 2.59 8.02 -2.38 -0.02 2.57 16 30 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 3.40 6.17 -2.39 -0.01 3.38 16 32 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 33 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 35 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 2.45 6.09 -2.39 -0.01 2.44 16 39 H 0.05 0.98 6.65 -2.39 -0.02 0.97 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.03 0.84 7.93 -2.39 -0.02 0.82 16 Total: -1.00 -62.82 315.09 2.09 -60.73 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: 0.96 Total: 9.51 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.38 Total: -27.21 kcal Atomic # 7 Polarization: -73.40 SS G_CDS: -3.81 Total: -77.20 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -1.47 Total: -12.37 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.82 2.09 -60.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397162348.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.798 kcal (2) G-P(sol) polarization free energy of solvation -62.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds