Wall clock time and date at job start Sun Mar 29 2020 22:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47288 * 2 1 4 4 C 1.53004 * 109.46805 * 240.00018 * 2 1 3 5 5 H 1.09000 * 109.47456 * 60.00023 * 4 2 1 6 6 O 1.42903 * 109.47211 * 300.00012 * 4 2 1 7 7 C 1.53004 * 109.47111 * 180.02562 * 4 2 1 8 8 N 1.46893 * 109.47070 * 178.27021 * 7 4 2 9 9 C 1.46844 * 110.99936 * 51.93724 * 8 7 4 10 10 C 1.53042 * 109.52376 * 185.83691 * 9 8 7 11 11 C 1.53118 * 109.27817 * 300.81594 * 10 9 8 12 12 C 1.50694 * 109.57628 * 177.59326 * 11 10 9 13 13 H 1.08005 * 119.99944 * 240.28812 * 12 11 10 14 14 C 1.37873 * 120.00494 * 60.28408 * 12 11 10 15 15 N 1.31520 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00443 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46784 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47001 * 120.00077 * 16 14 12 19 19 H 1.48503 * 109.46737 * 240.00034 * 16 14 12 20 20 C 1.53119 * 109.15827 * 57.65283 * 11 10 9 21 21 C 1.46851 * 110.99956 * 176.13934 * 8 7 4 22 22 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47147 * 300.00072 * 1 2 3 24 24 H 1.09000 * 109.47354 * 59.99696 * 1 2 3 25 25 H 1.09000 * 109.47354 * 120.00304 * 2 1 3 26 26 H 1.09002 * 109.47109 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46906 * 299.99936 * 3 2 1 28 28 H 1.08993 * 109.46985 * 60.00066 * 3 2 1 29 29 H 0.96705 * 113.99537 * 300.00156 * 6 4 2 30 30 H 1.08998 * 109.47094 * 298.27526 * 7 4 2 31 31 H 1.09000 * 109.47032 * 58.27274 * 7 4 2 32 32 H 1.08997 * 109.46537 * 305.85202 * 9 8 7 33 33 H 1.09002 * 109.46623 * 65.82159 * 9 8 7 34 34 H 1.08998 * 109.50191 * 180.87912 * 10 9 8 35 35 H 1.08996 * 109.50290 * 60.76285 * 10 9 8 36 36 H 1.09003 * 109.52583 * 297.75128 * 11 10 9 37 37 H 0.96993 * 120.00357 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.50420 * 182.39965 * 20 11 10 39 39 H 1.09005 * 109.53180 * 62.30507 * 20 11 10 40 40 H 1.08994 * 109.46796 * 294.18383 * 21 8 7 41 41 H 1.09008 * 109.46046 * 54.16159 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6766 -0.2075 -2.1393 6 8 1.5636 -2.0686 -1.2493 7 6 3.5700 -0.7219 -1.2490 8 7 4.0595 -1.4502 -2.4270 9 6 3.4384 -0.9409 -3.6563 10 6 3.8584 -1.8138 -4.8411 11 6 5.3839 -1.7906 -4.9705 12 6 5.8088 -2.6949 -6.0986 13 1 6.4583 -3.5351 -5.9018 14 6 5.3684 -2.4498 -7.3819 15 7 4.5779 -1.4264 -7.6216 16 14 5.8946 -3.5712 -8.7801 17 1 6.7775 -4.6414 -8.2508 18 1 4.6933 -4.1838 -9.4021 19 1 6.6306 -2.7802 -9.7988 20 6 6.0068 -2.2798 -3.6600 21 6 5.5246 -1.3934 -2.5095 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.8489 -2.5866 -0.4842 30 1 3.9337 0.3052 -1.2798 31 1 3.9329 -1.2089 -0.3440 32 1 2.3537 -0.9665 -3.5528 33 1 3.7624 0.0855 -3.8286 34 1 3.4098 -1.4261 -5.7557 35 1 3.5226 -2.8375 -4.6760 36 1 5.7169 -0.7729 -5.1744 37 1 4.2684 -1.2537 -8.5245 38 1 7.0932 -2.2253 -3.7308 39 1 5.7054 -3.3110 -3.4759 40 1 5.8388 -0.3650 -2.6871 41 1 5.9551 -1.7482 -1.5730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397166956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:16 Heat of formation + Delta-G solvation = -70.653303 kcal Electronic energy + Delta-G solvation = -18389.827897 eV Core-core repulsion = 15689.657315 eV Total energy + Delta-G solvation = -2700.170583 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.08249 -37.19430 -34.09204 -33.69695 -31.34054 -29.73753 -28.12492 -26.93576 -25.28698 -23.00042 -22.07425 -21.03840 -20.14334 -18.52703 -16.52555 -16.25015 -15.59527 -15.17576 -14.63260 -14.41297 -14.07310 -13.65609 -13.22345 -12.96655 -12.69872 -12.40429 -12.26707 -12.24044 -11.89015 -11.62968 -11.37673 -11.14182 -10.99681 -10.90487 -10.68346 -10.53425 -10.31617 -10.14020 -9.92299 -9.56810 -9.33467 -8.89312 -8.59969 -8.23559 -7.63131 -5.91784 -3.96822 3.34137 3.42010 3.46320 4.24152 4.50007 4.59281 4.75490 4.88771 5.05824 5.25170 5.36992 5.40583 5.52244 5.55859 5.70218 5.76073 5.77089 5.83241 5.93376 5.96247 6.01349 6.17173 6.21034 6.25719 6.35267 6.38791 6.69356 6.72597 6.91906 7.14347 7.25272 7.52428 7.68577 7.76001 7.87249 7.94346 8.12642 8.23439 8.54897 9.07109 9.67330 11.14534 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041914 B = 0.005185 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.882069 B = 5398.865242 C = 5619.352222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.127 4.127 3 C -0.149 4.149 4 C 0.111 3.889 5 H 0.099 0.901 6 O -0.544 6.544 7 C 0.021 3.979 8 N -0.525 5.525 9 C 0.055 3.945 10 C -0.102 4.102 11 C 0.047 3.953 12 C -0.508 4.508 13 H 0.054 0.946 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.889 3.111 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.286 1.286 20 C -0.105 4.105 21 C 0.060 3.940 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.070 0.930 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.368 0.632 30 H 0.035 0.965 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.017 0.983 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.258 0.742 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.021 0.979 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.185 3.971 15.063 16.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.147 4.147 3 C -0.207 4.207 4 C 0.052 3.948 5 H 0.117 0.883 6 O -0.347 6.347 7 C -0.108 4.108 8 N -0.250 5.250 9 C -0.072 4.072 10 C -0.140 4.140 11 C 0.028 3.972 12 C -0.547 4.547 13 H 0.073 0.927 14 C -0.140 4.140 15 N -0.532 5.532 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.143 4.143 21 C -0.068 4.068 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.214 0.786 30 H 0.053 0.947 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.039 0.961 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.678 3.760 14.391 15.920 hybrid contribution 0.815 0.262 -0.324 0.916 sum -4.862 4.022 14.066 15.417 Atomic orbital electron populations 1.21741 0.94571 1.02300 1.01288 1.21830 0.96848 0.97021 0.98964 1.21866 1.01311 0.95629 1.01874 1.22057 0.91987 0.83412 0.97378 0.88310 1.86627 1.75987 1.22776 1.49350 1.22859 0.95827 0.96840 0.95238 1.61976 1.06166 1.54574 1.02252 1.22339 0.97932 0.96600 0.90374 1.21628 0.99447 0.97658 0.95315 1.18694 0.91739 0.96229 0.90489 1.21256 1.29036 1.12196 0.92190 0.92738 1.24969 0.95142 0.95267 0.98668 1.69894 1.34460 1.28403 1.20444 0.86583 0.78386 0.80884 0.82421 1.19842 1.21080 1.21185 1.21667 0.98567 0.98745 0.95356 1.22124 0.87254 0.98317 0.99091 0.91958 0.93143 0.92727 0.91189 0.92274 0.92468 0.92681 0.78562 0.94669 0.91419 0.91934 0.96506 0.89128 0.93753 0.96307 0.93213 0.93330 0.92481 0.96070 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.05 37.16 0.34 -1.05 16 2 C -0.13 -1.29 2.69 -90.62 -0.24 -1.53 16 3 C -0.15 -1.42 8.84 37.16 0.33 -1.09 16 4 C 0.11 1.45 1.95 -26.73 -0.05 1.40 16 5 H 0.10 1.46 6.30 -51.93 -0.33 1.13 16 6 O -0.54 -7.71 12.50 -35.23 -0.44 -8.15 16 7 C 0.02 0.30 4.39 -3.83 -0.02 0.28 16 8 N -0.52 -9.58 4.60 -234.67 -1.08 -10.66 16 9 C 0.05 1.12 5.04 -3.83 -0.02 1.10 16 10 C -0.10 -2.52 5.12 -26.65 -0.14 -2.65 16 11 C 0.05 1.21 2.16 -91.65 -0.20 1.01 16 12 C -0.51 -14.32 8.56 -34.44 -0.30 -14.61 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.60 16 15 N -0.89 -25.97 11.38 55.43 0.63 -25.34 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 C -0.11 -2.29 5.32 -26.65 -0.14 -2.43 16 21 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 22 H 0.06 0.63 7.68 -51.93 -0.40 0.24 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.57 6.47 -51.93 -0.34 0.23 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.37 3.97 9.05 45.56 0.41 4.39 16 30 H 0.04 0.49 6.52 -51.93 -0.34 0.15 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 1.23 5.88 -51.93 -0.31 0.92 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 2.47 6.18 -51.93 -0.32 2.15 16 35 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.89 8.12 -51.92 -0.42 0.47 16 LS Contribution 313.16 15.07 4.72 4.72 Total: -1.00 -29.73 313.16 -8.39 -38.13 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.65 Total: 1.51 kcal Atomic # 6 Polarization: -16.33 SS G_CDS: -0.55 Total: -16.89 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: -0.45 Total: -35.99 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.44 Total: -8.15 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.73 -8.39 -38.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.524 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds