Wall clock time and date at job start Sun Mar 29 2020 22:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47288 * 2 1 4 4 C 1.53004 * 109.46805 * 240.00018 * 2 1 3 5 5 H 1.09000 * 109.47456 * 60.00023 * 4 2 1 6 6 O 1.42903 * 109.47211 * 300.00012 * 4 2 1 7 7 C 1.53004 * 109.47111 * 180.02562 * 4 2 1 8 8 N 1.46893 * 109.47070 * 178.27021 * 7 4 2 9 9 C 1.46844 * 110.99936 * 51.93724 * 8 7 4 10 10 C 1.53042 * 109.52376 * 185.83691 * 9 8 7 11 11 C 1.53118 * 109.27817 * 300.81594 * 10 9 8 12 12 C 1.50694 * 109.57628 * 177.59326 * 11 10 9 13 13 H 1.08005 * 119.99944 * 240.28812 * 12 11 10 14 14 C 1.37873 * 120.00494 * 60.28408 * 12 11 10 15 15 N 1.31520 * 119.99791 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00443 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46784 * 0.02562 * 16 14 12 18 18 H 1.48495 * 109.47001 * 120.00077 * 16 14 12 19 19 H 1.48503 * 109.46737 * 240.00034 * 16 14 12 20 20 C 1.53119 * 109.15827 * 57.65283 * 11 10 9 21 21 C 1.46851 * 110.99956 * 176.13934 * 8 7 4 22 22 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47147 * 300.00072 * 1 2 3 24 24 H 1.09000 * 109.47354 * 59.99696 * 1 2 3 25 25 H 1.09000 * 109.47354 * 120.00304 * 2 1 3 26 26 H 1.09002 * 109.47109 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46906 * 299.99936 * 3 2 1 28 28 H 1.08993 * 109.46985 * 60.00066 * 3 2 1 29 29 H 0.96705 * 113.99537 * 300.00156 * 6 4 2 30 30 H 1.08998 * 109.47094 * 298.27526 * 7 4 2 31 31 H 1.09000 * 109.47032 * 58.27274 * 7 4 2 32 32 H 1.08997 * 109.46537 * 305.85202 * 9 8 7 33 33 H 1.09002 * 109.46623 * 65.82159 * 9 8 7 34 34 H 1.08998 * 109.50191 * 180.87912 * 10 9 8 35 35 H 1.08996 * 109.50290 * 60.76285 * 10 9 8 36 36 H 1.09003 * 109.52583 * 297.75128 * 11 10 9 37 37 H 0.96993 * 120.00357 * 179.97438 * 15 14 12 38 38 H 1.09005 * 109.50420 * 182.39965 * 20 11 10 39 39 H 1.09005 * 109.53180 * 62.30507 * 20 11 10 40 40 H 1.08994 * 109.46796 * 294.18383 * 21 8 7 41 41 H 1.09008 * 109.46046 * 54.16159 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6766 -0.2075 -2.1393 6 8 1.5636 -2.0686 -1.2493 7 6 3.5700 -0.7219 -1.2490 8 7 4.0595 -1.4502 -2.4270 9 6 3.4384 -0.9409 -3.6563 10 6 3.8584 -1.8138 -4.8411 11 6 5.3839 -1.7906 -4.9705 12 6 5.8088 -2.6949 -6.0986 13 1 6.4583 -3.5351 -5.9018 14 6 5.3684 -2.4498 -7.3819 15 7 4.5779 -1.4264 -7.6216 16 14 5.8946 -3.5712 -8.7801 17 1 6.7775 -4.6414 -8.2508 18 1 4.6933 -4.1838 -9.4021 19 1 6.6306 -2.7802 -9.7988 20 6 6.0068 -2.2798 -3.6600 21 6 5.5246 -1.3934 -2.5095 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8934 -0.5139 0.8899 26 1 3.1300 1.4424 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9562 0.8899 29 1 1.8489 -2.5866 -0.4842 30 1 3.9337 0.3052 -1.2798 31 1 3.9329 -1.2089 -0.3440 32 1 2.3537 -0.9665 -3.5528 33 1 3.7624 0.0855 -3.8286 34 1 3.4098 -1.4261 -5.7557 35 1 3.5226 -2.8375 -4.6760 36 1 5.7169 -0.7729 -5.1744 37 1 4.2684 -1.2537 -8.5245 38 1 7.0932 -2.2253 -3.7308 39 1 5.7054 -3.3110 -3.4759 40 1 5.8388 -0.3650 -2.6871 41 1 5.9551 -1.7482 -1.5730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397166956.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:15 Heat of formation + Delta-G solvation = -91.065418 kcal Electronic energy + Delta-G solvation = -18390.713033 eV Core-core repulsion = 15689.657315 eV Total energy + Delta-G solvation = -2701.055719 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.37950 -38.57063 -35.54783 -35.00509 -33.20118 -31.48452 -29.45455 -27.84088 -27.00218 -24.54321 -23.71465 -22.45482 -21.18108 -20.34143 -18.45770 -17.50604 -16.85831 -16.57719 -16.22322 -15.86380 -15.26329 -14.96472 -14.71369 -14.51429 -14.26950 -13.95052 -13.67487 -13.12097 -13.07411 -12.91207 -12.85604 -12.66539 -12.55675 -12.29362 -12.13952 -11.98175 -11.86608 -11.78415 -11.45589 -11.29444 -10.81494 -10.67376 -10.49754 -10.36290 -9.09672 -8.08045 -6.21669 1.39697 1.41374 1.53133 2.43865 2.98607 3.18805 3.65444 3.71864 3.99307 4.12357 4.22709 4.25477 4.31247 4.44000 4.49379 4.55166 4.69293 4.75898 4.79292 4.84272 4.90191 4.95038 4.99486 5.00848 5.08177 5.13737 5.21660 5.24630 5.34578 5.44256 5.48044 5.57811 5.63315 6.00218 6.03185 6.30830 6.36828 6.41038 6.90410 7.02045 7.46228 8.96953 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041914 B = 0.005185 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.882069 B = 5398.865242 C = 5619.352222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C -0.149 4.149 4 C 0.114 3.886 5 H 0.075 0.925 6 O -0.564 6.564 7 C 0.022 3.978 8 N -0.533 5.533 9 C 0.070 3.930 10 C -0.093 4.093 11 C 0.043 3.957 12 C -0.533 4.533 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.955 3.045 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.279 1.279 20 C -0.099 4.099 21 C 0.065 3.935 22 H 0.055 0.945 23 H 0.067 0.933 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.383 0.617 30 H 0.042 0.958 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.009 0.991 34 H 0.057 0.943 35 H 0.026 0.974 36 H -0.013 1.013 37 H 0.260 0.740 38 H 0.053 0.947 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 3.752 16.973 18.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.137 4.137 3 C -0.207 4.207 4 C 0.055 3.945 5 H 0.093 0.907 6 O -0.371 6.371 7 C -0.105 4.105 8 N -0.257 5.257 9 C -0.058 4.058 10 C -0.132 4.132 11 C 0.025 3.975 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.559 5.559 16 Si 0.780 3.220 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.137 4.137 21 C -0.062 4.062 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.088 0.912 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.045 0.955 36 H 0.005 0.995 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.037 0.963 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.479 3.539 16.327 17.581 hybrid contribution 0.744 0.331 -0.907 1.219 sum -4.734 3.869 15.420 16.588 Atomic orbital electron populations 1.21732 0.94392 1.02034 1.01642 1.21740 0.96900 0.97125 0.97890 1.21873 1.01298 0.95225 1.02280 1.21989 0.91179 0.83278 0.98067 0.90669 1.86594 1.76318 1.23503 1.50650 1.22987 0.96522 0.97021 0.93992 1.61910 1.05943 1.55503 1.02380 1.22027 0.98465 0.95045 0.90216 1.21388 0.98676 0.97134 0.95955 1.18669 0.92534 0.94091 0.92223 1.21630 1.29307 1.12614 0.93545 0.93061 1.25770 0.95111 0.96679 1.01188 1.70034 1.35146 1.29760 1.21004 0.85557 0.78110 0.79091 0.79213 1.19113 1.20663 1.20529 1.21535 0.98703 0.98873 0.94608 1.22067 0.87563 0.97493 0.99126 0.92540 0.91406 0.93777 0.89353 0.92258 0.93382 0.91032 0.76842 0.93951 0.88853 0.91215 0.97285 0.92405 0.95481 0.99511 0.93116 0.92789 0.93139 0.96274 0.89239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.05 71.98 0.65 -1.81 16 2 C -0.12 -2.06 2.69 -10.79 -0.03 -2.09 16 3 C -0.15 -2.45 8.84 71.98 0.64 -1.82 16 4 C 0.11 2.78 1.95 30.60 0.06 2.84 16 5 H 0.08 2.19 6.30 -2.39 -0.02 2.17 16 6 O -0.56 -15.09 12.50 -148.98 -1.86 -16.95 16 7 C 0.02 0.58 4.39 86.31 0.38 0.96 16 8 N -0.53 -18.65 4.60 -896.37 -4.12 -22.77 16 9 C 0.07 2.91 5.04 86.33 0.43 3.34 16 10 C -0.09 -4.74 5.12 30.65 0.16 -4.59 16 11 C 0.04 2.29 2.16 -11.46 -0.02 2.26 16 12 C -0.53 -30.68 8.56 25.60 0.22 -30.46 16 13 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 14 C 0.01 0.61 5.31 84.65 0.45 1.06 16 15 N -0.92 -54.99 11.38 21.45 0.24 -54.75 16 16 Si 0.95 45.01 29.54 68.60 2.03 47.04 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 19 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 20 C -0.10 -4.28 5.32 30.64 0.16 -4.12 16 21 C 0.07 2.30 5.46 86.32 0.47 2.77 16 22 H 0.06 1.05 7.68 -2.39 -0.02 1.03 16 23 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.06 0.97 6.47 -2.39 -0.02 0.96 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.38 7.34 9.05 -74.05 -0.67 6.67 16 30 H 0.04 1.07 6.52 -2.39 -0.02 1.05 16 31 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 2.78 5.88 -2.39 -0.01 2.76 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.06 3.30 6.18 -2.39 -0.01 3.28 16 35 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 36 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 37 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 38 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.09 2.58 8.12 -2.38 -0.02 2.56 16 Total: -1.00 -65.03 313.16 0.17 -64.86 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.31 Total: 14.22 kcal Atomic # 6 Polarization: -35.22 SS G_CDS: 3.57 Total: -31.65 kcal Atomic # 7 Polarization: -73.64 SS G_CDS: -3.88 Total: -77.52 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -1.86 Total: -16.95 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -65.03 0.17 -64.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166956.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.205 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds