Wall clock time and date at job start Sun Mar 29 2020 22:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52991 * 109.47311 * 2 1 4 4 C 1.53001 * 109.46640 * 119.99709 * 2 1 3 5 5 H 1.08993 * 109.46943 * 184.99658 * 4 2 1 6 6 O 1.42901 * 109.47315 * 305.00035 * 4 2 1 7 7 C 1.53000 * 109.47258 * 65.00127 * 4 2 1 8 8 N 1.46901 * 109.47343 * 179.69000 * 7 4 2 9 9 C 1.46851 * 111.00094 * 169.65301 * 8 7 4 10 10 C 1.53037 * 109.52231 * 185.83719 * 9 8 7 11 11 C 1.53116 * 109.27952 * 300.81943 * 10 9 8 12 12 C 1.50700 * 109.57614 * 177.59116 * 11 10 9 13 13 H 1.07997 * 120.00092 * 240.28021 * 12 11 10 14 14 C 1.37874 * 119.99814 * 60.28350 * 12 11 10 15 15 N 1.31511 * 120.00398 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47240 * 120.00121 * 16 14 12 19 19 H 1.48504 * 109.47131 * 240.00060 * 16 14 12 20 20 C 1.53116 * 109.16116 * 57.65209 * 11 10 9 21 21 C 1.46853 * 110.99696 * 293.85850 * 8 7 4 22 22 H 1.08999 * 109.46899 * 60.00233 * 1 2 3 23 23 H 1.08999 * 109.47112 * 300.00224 * 1 2 3 24 24 H 1.08994 * 109.47360 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47336 * 239.99320 * 2 1 3 26 26 H 1.08999 * 109.47215 * 59.99839 * 3 2 1 27 27 H 1.09002 * 109.47400 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.46948 * 299.99736 * 3 2 1 29 29 H 0.96698 * 113.99991 * 60.00337 * 6 4 2 30 30 H 1.09000 * 109.46956 * 299.68835 * 7 4 2 31 31 H 1.09000 * 109.47132 * 59.68557 * 7 4 2 32 32 H 1.09001 * 109.45667 * 305.84994 * 9 8 7 33 33 H 1.08994 * 109.46447 * 65.81760 * 9 8 7 34 34 H 1.09001 * 109.50293 * 180.87255 * 10 9 8 35 35 H 1.09006 * 109.53287 * 60.77631 * 10 9 8 36 36 H 1.09004 * 109.51896 * 297.74880 * 11 10 9 37 37 H 0.97000 * 120.00329 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.50532 * 182.40436 * 20 11 10 39 39 H 1.08997 * 109.54016 * 62.30986 * 20 11 10 40 40 H 1.09002 * 109.45756 * 294.17708 * 21 8 7 41 41 H 1.08998 * 109.46013 * 54.15418 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1262 -0.6444 1.2952 6 8 1.4701 -0.1187 2.4131 7 6 1.6352 -2.1954 1.1881 8 7 2.1311 -2.8895 2.3841 9 6 1.5595 -4.2385 2.4846 10 6 1.9813 -4.8750 3.8109 11 6 3.5096 -4.9419 3.8761 12 6 3.9339 -5.5135 5.2044 13 1 4.5499 -4.9292 5.8717 14 6 3.5355 -6.7825 5.5676 15 7 2.7849 -7.4939 4.7552 16 14 4.0608 -7.4907 7.2144 17 1 4.8948 -6.4971 7.9372 18 1 2.8567 -7.8088 8.0232 19 1 4.8490 -8.7295 6.9918 20 6 4.0816 -3.5301 3.7203 21 6 3.5989 -2.9325 2.3968 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 0.5040 -0.1507 2.4396 30 1 0.5486 -2.2725 1.1477 31 1 2.0652 -2.6536 0.2975 32 1 0.4721 -4.1762 2.4413 33 1 1.9215 -4.8489 1.6574 34 1 1.5697 -5.8821 3.8784 35 1 1.6078 -4.2730 4.6392 36 1 3.8811 -5.5763 3.0712 37 1 2.5050 -8.3868 5.0106 38 1 5.1706 -3.5763 3.7231 39 1 3.7418 -2.9060 4.5468 40 1 3.9513 -3.5492 1.5699 41 1 3.9928 -1.9218 2.2897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397166957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:37:17 Heat of formation + Delta-G solvation = -91.416882 kcal Electronic energy + Delta-G solvation = -18322.513177 eV Core-core repulsion = 15621.442218 eV Total energy + Delta-G solvation = -2701.070959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.34712 -38.72452 -35.58293 -34.57279 -33.21073 -31.53474 -29.42703 -28.05947 -27.14207 -24.55995 -23.60501 -22.50250 -20.86607 -20.33531 -18.45889 -17.52226 -16.79668 -16.66464 -16.21306 -15.93885 -15.57334 -14.89833 -14.70757 -14.45645 -14.15675 -14.05703 -13.60236 -13.10847 -13.01473 -12.87317 -12.82444 -12.68174 -12.58398 -12.21470 -12.07954 -12.02616 -11.88769 -11.73370 -11.44310 -11.32467 -10.81872 -10.65570 -10.57139 -10.34872 -9.10675 -8.08139 -6.21468 1.39856 1.41613 1.53412 2.44024 2.96195 3.18639 3.70595 3.78087 3.96590 4.09273 4.23200 4.24048 4.34436 4.41043 4.46726 4.58931 4.68176 4.76423 4.79105 4.84049 4.89657 4.93408 4.98482 5.06732 5.08295 5.14606 5.21653 5.24647 5.34391 5.45152 5.50567 5.56376 5.63169 6.00348 6.03157 6.31478 6.35149 6.41430 6.89768 6.98664 7.46264 8.96698 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.055492 B = 0.004822 C = 0.004676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.456904 B = 5804.915523 C = 5986.577659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.140 4.140 4 C 0.121 3.879 5 H 0.084 0.916 6 O -0.562 6.562 7 C 0.021 3.979 8 N -0.533 5.533 9 C 0.069 3.931 10 C -0.094 4.094 11 C 0.044 3.956 12 C -0.534 4.534 13 H 0.049 0.951 14 C 0.013 3.987 15 N -0.918 5.918 16 Si 0.954 3.046 17 H -0.269 1.269 18 H -0.279 1.279 19 H -0.280 1.280 20 C -0.099 4.099 21 C 0.067 3.933 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.378 0.622 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.013 0.987 34 H 0.061 0.939 35 H 0.028 0.972 36 H -0.012 1.012 37 H 0.260 0.740 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.019 0.981 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 14.129 -10.769 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 C -0.197 4.197 4 C 0.061 3.939 5 H 0.102 0.898 6 O -0.369 6.369 7 C -0.107 4.107 8 N -0.257 5.257 9 C -0.059 4.059 10 C -0.132 4.132 11 C 0.025 3.975 12 C -0.572 4.572 13 H 0.067 0.933 14 C -0.186 4.186 15 N -0.558 5.558 16 Si 0.780 3.220 17 H -0.193 1.193 18 H -0.205 1.205 19 H -0.206 1.206 20 C -0.137 4.137 21 C -0.061 4.061 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.099 0.901 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.227 0.773 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.047 0.953 36 H 0.006 0.994 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.037 0.963 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.404 14.329 -10.228 18.148 hybrid contribution 0.053 -1.501 0.052 1.503 sum -4.350 12.828 -10.176 16.942 Atomic orbital electron populations 1.21894 0.94053 1.02240 1.02814 1.21736 0.97377 0.97287 0.97796 1.21730 1.00704 0.95230 1.02071 1.21908 0.97746 0.89054 0.85200 0.89807 1.86571 1.25885 1.80890 1.43529 1.22979 1.01285 0.95601 0.90804 1.61877 1.07213 1.17460 1.39184 1.22046 0.98663 0.88111 0.97070 1.21403 0.98369 0.99133 0.94340 1.18660 0.92798 0.91440 0.94553 1.21614 1.31476 1.00258 1.03827 0.93288 1.25735 0.95119 0.97352 1.00359 1.70018 1.37023 1.11050 1.37670 0.85569 0.78117 0.78214 0.80135 1.19342 1.20495 1.20552 1.21524 0.98636 0.97030 0.96477 1.22045 0.87810 0.99803 0.96457 0.91368 0.91923 0.92323 0.90087 0.92735 0.93167 0.91615 0.77329 0.89411 0.94328 0.90786 0.96852 0.92026 0.95265 0.99404 0.93067 0.93094 0.93415 0.96250 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.52 71.98 0.61 -1.54 16 2 C -0.12 -2.07 2.75 -10.79 -0.03 -2.10 16 3 C -0.14 -2.26 9.09 71.98 0.65 -1.61 16 4 C 0.12 2.76 2.60 30.59 0.08 2.84 16 5 H 0.08 2.12 6.43 -2.39 -0.02 2.10 16 6 O -0.56 -14.48 12.64 -148.98 -1.88 -16.36 16 7 C 0.02 0.55 4.37 86.30 0.38 0.93 16 8 N -0.53 -18.71 4.53 -896.34 -4.06 -22.76 16 9 C 0.07 2.72 5.46 86.33 0.47 3.19 16 10 C -0.09 -4.65 5.12 30.65 0.16 -4.50 16 11 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 12 C -0.53 -30.69 8.56 25.60 0.22 -30.47 16 13 H 0.05 2.80 7.74 -2.91 -0.02 2.77 16 14 C 0.01 0.72 5.31 84.65 0.45 1.17 16 15 N -0.92 -54.08 11.37 21.45 0.24 -53.83 16 16 Si 0.95 44.76 29.54 68.60 2.03 46.78 16 17 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 20 C -0.10 -4.37 5.32 30.64 0.16 -4.21 16 21 C 0.07 2.44 5.29 86.32 0.46 2.90 16 22 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.06 0.84 6.72 -2.39 -0.02 0.82 16 24 H 0.06 0.84 6.57 -2.39 -0.02 0.82 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.05 0.97 7.82 -2.39 -0.02 0.95 16 27 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.38 7.59 7.19 -74.06 -0.53 7.06 16 30 H 0.09 2.04 6.42 -2.39 -0.02 2.02 16 31 H 0.04 0.98 8.12 -2.39 -0.02 0.96 16 32 H 0.07 2.61 8.01 -2.39 -0.02 2.59 16 33 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 3.40 6.17 -2.39 -0.01 3.38 16 35 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 36 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.17 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 41 H 0.08 2.64 6.22 -2.39 -0.01 2.62 16 Total: -1.00 -63.58 311.11 0.37 -63.21 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.45 Total: 14.05 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.59 Total: -31.09 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -3.81 Total: -76.60 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.88 Total: -16.36 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -63.58 0.37 -63.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397166957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.202 kcal (2) G-P(sol) polarization free energy of solvation -63.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds