Wall clock time and date at job start Sun Mar 29 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 O 1.42906 * 109.47485 * 239.99893 * 2 1 3 5 5 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 2 1 7 7 N 1.46896 * 109.47114 * 180.02562 * 6 5 2 8 8 C 1.46849 * 111.00042 * 294.21049 * 7 6 5 9 9 C 1.53034 * 109.52665 * 174.16046 * 8 7 6 10 10 C 1.53116 * 109.27705 * 59.18137 * 9 8 7 11 11 C 1.50707 * 109.57516 * 182.41256 * 10 9 8 12 12 H 1.07998 * 119.99824 * 119.71550 * 11 10 9 13 13 C 1.37877 * 119.99839 * 299.71317 * 11 10 9 14 14 N 1.31520 * 119.99892 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46966 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46911 * 120.00022 * 15 13 11 18 18 H 1.48500 * 109.46790 * 239.99792 * 15 13 11 19 19 C 1.53128 * 109.15958 * 302.34327 * 10 9 8 20 20 C 1.46847 * 111.00074 * 170.00310 * 7 6 5 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 0.96696 * 113.99911 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.46801 * 180.02562 * 5 2 1 29 29 H 1.09001 * 109.46998 * 299.99705 * 5 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 6 5 2 31 31 H 1.09001 * 109.46832 * 60.00321 * 6 5 2 32 32 H 1.09002 * 109.46271 * 294.17549 * 8 7 6 33 33 H 1.09001 * 109.46034 * 54.14432 * 8 7 6 34 34 H 1.09004 * 109.50188 * 299.24290 * 9 8 7 35 35 H 1.08999 * 109.50335 * 179.11797 * 9 8 7 36 36 H 1.08993 * 109.52697 * 62.25096 * 10 9 8 37 37 H 0.96995 * 119.99995 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.50485 * 297.71423 * 19 10 9 39 39 H 1.08998 * 109.49849 * 177.59475 * 19 10 9 40 40 H 1.09002 * 109.46202 * 305.84950 * 20 7 6 41 41 H 1.09000 * 109.46577 * 65.83277 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 7 2.0191 -2.8561 2.4490 8 6 3.4805 -2.9966 2.4164 9 6 3.9672 -3.5883 3.7412 10 6 3.3091 -4.9539 3.9569 11 6 3.7378 -5.5164 5.2877 12 1 2.9994 -5.7335 6.0453 13 6 5.0728 -5.7538 5.5380 14 7 5.9719 -5.4899 4.6151 15 14 5.6041 -6.4517 7.1872 16 1 4.4097 -6.6596 8.0447 17 1 6.2947 -7.7493 6.9762 18 1 6.5305 -5.5003 7.8519 19 6 1.7871 -4.7869 3.9384 20 6 1.3637 -4.1605 2.6078 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.9704 -0.7122 -1.2326 28 1 3.1300 -0.7209 1.2494 29 1 1.6767 -0.2074 2.1393 30 1 0.4400 -2.1637 1.2492 31 1 1.8934 -2.6776 0.3593 32 1 3.7636 -3.6580 1.5975 33 1 3.9362 -2.0178 2.2666 34 1 3.6965 -2.9206 4.5592 35 1 5.0502 -3.7070 3.7107 36 1 3.6107 -5.6336 3.1600 37 1 6.9110 -5.6573 4.7910 38 1 1.4822 -4.1381 4.7595 39 1 1.3127 -5.7620 4.0489 40 1 0.2819 -4.0271 2.5972 41 1 1.6568 -4.8165 1.7882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397209002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:21 Heat of formation + Delta-G solvation = -72.522156 kcal Electronic energy + Delta-G solvation = -18187.238634 eV Core-core repulsion = 15486.987011 eV Total energy + Delta-G solvation = -2700.251622 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.99951 -37.69194 -34.16592 -32.76108 -31.35418 -29.76241 -28.57295 -27.46605 -25.48171 -22.92886 -22.00349 -20.98608 -20.04870 -18.54273 -16.49487 -16.34196 -15.53615 -15.34833 -14.53546 -14.39021 -13.93966 -13.74186 -13.22510 -12.91064 -12.59603 -12.45944 -12.32114 -12.20965 -12.06927 -11.82930 -11.49190 -11.22501 -10.95148 -10.84727 -10.69426 -10.45040 -10.39852 -10.15682 -9.94255 -9.84013 -9.37178 -8.91335 -8.64696 -8.26593 -7.67113 -5.94574 -3.99651 3.31946 3.39933 3.44316 4.11991 4.43407 4.47973 4.76204 4.81784 5.06807 5.31206 5.36057 5.43848 5.52871 5.63597 5.73304 5.74758 5.86743 5.87247 5.94718 5.98577 6.06790 6.15503 6.23187 6.30309 6.36633 6.38644 6.67279 6.68364 6.90445 7.12985 7.21589 7.48544 7.61725 7.67537 7.77186 7.88507 8.09069 8.19704 8.51919 9.04436 9.64632 11.11712 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.004759 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.581272 B = 5882.363874 C = 6151.853154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.125 3.875 3 C -0.177 4.177 4 O -0.562 6.562 5 C -0.140 4.140 6 C 0.058 3.942 7 N -0.538 5.538 8 C 0.056 3.944 9 C -0.104 4.104 10 C 0.047 3.953 11 C -0.509 4.509 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.106 4.106 20 C 0.061 3.939 21 H 0.069 0.931 22 H 0.057 0.943 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.375 0.625 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.032 0.968 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.091 0.909 36 H 0.020 0.980 37 H 0.258 0.742 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.480 10.875 -8.710 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.084 3.916 3 C -0.234 4.234 4 O -0.368 6.368 5 C -0.178 4.178 6 C -0.070 4.070 7 N -0.263 5.263 8 C -0.071 4.071 9 C -0.142 4.142 10 C 0.028 3.972 11 C -0.547 4.547 12 H 0.073 0.927 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.198 1.198 17 H -0.212 1.212 18 H -0.211 1.211 19 C -0.144 4.144 20 C -0.067 4.067 21 H 0.088 0.912 22 H 0.076 0.924 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.079 0.921 26 H 0.085 0.915 27 H 0.222 0.778 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.050 0.950 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.038 0.962 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -8.057 11.077 -8.430 16.083 hybrid contribution 1.258 -0.761 0.301 1.500 sum -6.799 10.316 -8.129 14.789 Atomic orbital electron populations 1.21786 0.92923 1.02961 1.02008 1.21237 0.94898 0.90454 0.84977 1.22477 1.01501 0.96896 1.02538 1.86526 1.26597 1.79630 1.44053 1.22276 1.01245 0.96438 0.97862 1.22019 0.99517 0.93696 0.91775 1.62020 1.06716 1.20711 1.36814 1.22298 0.86221 0.98715 0.99889 1.21654 1.02921 0.97241 0.92417 1.18691 0.88705 0.93010 0.96755 1.21266 0.92185 1.41370 0.99868 0.92710 1.24972 0.96827 0.95624 0.96636 1.69893 1.01158 1.48948 1.33230 0.86581 0.78590 0.78686 0.84409 1.19829 1.21152 1.21104 1.21679 0.99921 0.98176 0.94631 1.22094 0.97043 0.88902 0.98636 0.91158 0.92367 0.91569 0.92362 0.92075 0.91545 0.77820 0.91528 0.90385 0.91445 0.94988 0.96150 0.92666 0.93917 0.89078 0.96209 0.93206 0.92538 0.93268 0.92598 0.95944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.49 37.16 0.32 -1.12 16 2 C 0.13 1.36 1.09 -90.62 -0.10 1.26 16 3 C -0.18 -1.60 8.81 37.16 0.33 -1.27 16 4 O -0.56 -6.60 12.31 -35.23 -0.43 -7.04 16 5 C -0.14 -1.77 4.38 -26.73 -0.12 -1.89 16 6 C 0.06 0.87 4.46 -3.83 -0.02 0.85 16 7 N -0.54 -9.82 4.66 -234.67 -1.09 -10.91 16 8 C 0.06 1.12 5.29 -3.83 -0.02 1.10 16 9 C -0.10 -2.50 5.12 -26.65 -0.14 -2.63 16 10 C 0.05 1.19 2.16 -91.64 -0.20 0.99 16 11 C -0.51 -14.17 8.56 -34.44 -0.29 -14.47 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 13 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 14 N -0.89 -25.68 11.37 55.43 0.63 -25.04 16 15 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 16 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 C -0.11 -2.29 5.32 -26.64 -0.14 -2.44 16 20 C 0.06 1.14 5.46 -3.83 -0.02 1.12 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.37 3.34 9.04 45.56 0.41 3.75 16 28 H 0.07 0.87 6.43 -51.93 -0.33 0.53 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.96 6.27 -51.93 -0.33 0.63 16 31 H 0.03 0.51 7.66 -51.93 -0.40 0.11 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.05 1.00 6.21 -51.93 -0.32 0.68 16 34 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 2.42 6.18 -51.93 -0.32 2.10 16 36 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.93 8.02 -51.93 -0.42 0.51 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 313.66 15.07 4.73 4.73 Total: -1.00 -29.42 313.66 -8.34 -37.76 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -6.65 Total: 0.97 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -0.50 Total: -16.91 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.46 Total: -35.96 kcal Atomic # 8 Polarization: -6.60 SS G_CDS: -0.43 Total: -7.04 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.42 -8.34 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397209002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.765 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds