Wall clock time and date at job start Sun Mar 29 2020 22:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 O 1.42906 * 109.47485 * 239.99893 * 2 1 3 5 5 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 6 6 C 1.52997 * 109.47127 * 59.99836 * 5 2 1 7 7 N 1.46896 * 109.47114 * 180.02562 * 6 5 2 8 8 C 1.46849 * 111.00042 * 294.21049 * 7 6 5 9 9 C 1.53034 * 109.52665 * 174.16046 * 8 7 6 10 10 C 1.53116 * 109.27705 * 59.18137 * 9 8 7 11 11 C 1.50707 * 109.57516 * 182.41256 * 10 9 8 12 12 H 1.07998 * 119.99824 * 119.71550 * 11 10 9 13 13 C 1.37877 * 119.99839 * 299.71317 * 11 10 9 14 14 N 1.31520 * 119.99892 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99962 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46966 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.46911 * 120.00022 * 15 13 11 18 18 H 1.48500 * 109.46790 * 239.99792 * 15 13 11 19 19 C 1.53128 * 109.15958 * 302.34327 * 10 9 8 20 20 C 1.46847 * 111.00074 * 170.00310 * 7 6 5 21 21 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 22 22 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 23 23 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 25 25 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 26 26 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 27 27 H 0.96696 * 113.99911 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.46801 * 180.02562 * 5 2 1 29 29 H 1.09001 * 109.46998 * 299.99705 * 5 2 1 30 30 H 1.08996 * 109.46952 * 300.00302 * 6 5 2 31 31 H 1.09001 * 109.46832 * 60.00321 * 6 5 2 32 32 H 1.09002 * 109.46271 * 294.17549 * 8 7 6 33 33 H 1.09001 * 109.46034 * 54.14432 * 8 7 6 34 34 H 1.09004 * 109.50188 * 299.24290 * 9 8 7 35 35 H 1.08999 * 109.50335 * 179.11797 * 9 8 7 36 36 H 1.08993 * 109.52697 * 62.25096 * 10 9 8 37 37 H 0.96995 * 119.99995 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.50485 * 297.71423 * 19 10 9 39 39 H 1.08998 * 109.49849 * 177.59475 * 19 10 9 40 40 H 1.09002 * 109.46202 * 305.84950 * 20 7 6 41 41 H 1.09000 * 109.46577 * 65.83277 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7213 1.2493 6 6 1.5300 -2.1638 1.2493 7 7 2.0191 -2.8561 2.4490 8 6 3.4805 -2.9966 2.4164 9 6 3.9672 -3.5883 3.7412 10 6 3.3091 -4.9539 3.9569 11 6 3.7378 -5.5164 5.2877 12 1 2.9994 -5.7335 6.0453 13 6 5.0728 -5.7538 5.5380 14 7 5.9719 -5.4899 4.6151 15 14 5.6041 -6.4517 7.1872 16 1 4.4097 -6.6596 8.0447 17 1 6.2947 -7.7493 6.9762 18 1 6.5305 -5.5003 7.8519 19 6 1.7871 -4.7869 3.9384 20 6 1.3637 -4.1605 2.6078 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 2.9704 -0.7122 -1.2326 28 1 3.1300 -0.7209 1.2494 29 1 1.6767 -0.2074 2.1393 30 1 0.4400 -2.1637 1.2492 31 1 1.8934 -2.6776 0.3593 32 1 3.7636 -3.6580 1.5975 33 1 3.9362 -2.0178 2.2666 34 1 3.6965 -2.9206 4.5592 35 1 5.0502 -3.7070 3.7107 36 1 3.6107 -5.6336 3.1600 37 1 6.9110 -5.6573 4.7910 38 1 1.4822 -4.1381 4.7595 39 1 1.3127 -5.7620 4.0489 40 1 0.2819 -4.0271 2.5972 41 1 1.6568 -4.8165 1.7882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397209002.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:21 Heat of formation + Delta-G solvation = -92.409640 kcal Electronic energy + Delta-G solvation = -18188.101020 eV Core-core repulsion = 15486.987011 eV Total energy + Delta-G solvation = -2701.114008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.22268 -38.98343 -35.87289 -34.03668 -32.93706 -31.49075 -29.89050 -28.23187 -27.30081 -24.48134 -23.69769 -22.43046 -20.99607 -20.35626 -18.45013 -17.44514 -16.91383 -16.41687 -16.33454 -15.70136 -15.13518 -15.10350 -14.87314 -14.43098 -14.12013 -13.94447 -13.65296 -13.14496 -13.07445 -12.95795 -12.84052 -12.72481 -12.54030 -12.46392 -12.11967 -12.01263 -11.92053 -11.83430 -11.45038 -11.25397 -10.85770 -10.73703 -10.60010 -10.37162 -9.17003 -8.08065 -6.21580 1.40140 1.41886 1.53552 2.44037 3.00566 3.18851 3.41576 3.84080 3.97567 4.07844 4.24774 4.28161 4.31409 4.44172 4.48256 4.62228 4.71376 4.75930 4.78368 4.86406 4.90830 4.95251 4.98719 5.05478 5.07698 5.14629 5.23064 5.28048 5.31768 5.36050 5.44308 5.56530 5.63273 6.00290 6.03434 6.31177 6.35941 6.40970 6.87983 6.90208 7.46342 8.96901 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.047002 B = 0.004759 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.581272 B = 5882.363874 C = 6151.853154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.127 3.873 3 C -0.172 4.172 4 O -0.578 6.578 5 C -0.134 4.134 6 C 0.061 3.939 7 N -0.541 5.541 8 C 0.069 3.931 9 C -0.095 4.095 10 C 0.042 3.958 11 C -0.533 4.533 12 H 0.051 0.949 13 C 0.012 3.988 14 N -0.919 5.919 15 Si 0.954 3.046 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.279 1.279 19 C -0.099 4.099 20 C 0.065 3.935 21 H 0.083 0.917 22 H 0.063 0.937 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.385 0.615 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.024 0.976 32 H 0.008 0.992 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.060 0.940 36 H -0.015 1.015 37 H 0.260 0.740 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 11.999 -8.715 17.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.086 3.914 3 C -0.230 4.230 4 O -0.386 6.386 5 C -0.172 4.172 6 C -0.066 4.066 7 N -0.266 5.266 8 C -0.059 4.059 9 C -0.133 4.133 10 C 0.024 3.976 11 C -0.571 4.571 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.559 5.559 15 Si 0.780 3.220 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.137 4.137 20 C -0.063 4.063 21 H 0.101 0.899 22 H 0.082 0.918 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.234 0.766 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.043 0.957 32 H 0.027 0.973 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.003 0.997 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -9.038 12.208 -8.443 17.378 hybrid contribution 1.558 -1.128 0.280 1.944 sum -7.480 11.080 -8.163 15.664 Atomic orbital electron populations 1.21831 0.92452 1.02627 1.02976 1.21262 0.95291 0.91097 0.83726 1.22428 1.01771 0.95600 1.03194 1.86505 1.27768 1.79924 1.44357 1.22239 1.00896 0.95027 0.99050 1.22089 1.00260 0.94494 0.89776 1.62007 1.05312 1.20448 1.38838 1.22056 0.87813 0.99126 0.96884 1.21419 1.01004 0.96576 0.94344 1.18678 0.91565 0.92820 0.94568 1.21622 0.92589 1.41995 1.00879 0.93081 1.25752 0.96876 0.95894 1.00121 1.70028 1.01402 1.49465 1.34976 0.85563 0.78239 0.78006 0.80193 1.19198 1.20675 1.20523 1.21545 0.97056 0.98719 0.96385 1.22044 0.98751 0.88974 0.96501 0.89857 0.91829 0.92512 0.91983 0.91541 0.90758 0.76622 0.92009 0.90228 0.90083 0.95741 0.97334 0.90595 0.94988 0.92113 0.99658 0.93090 0.92882 0.92920 0.89547 0.96558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 8.49 71.98 0.61 -1.94 16 2 C 0.13 2.46 1.09 -10.79 -0.01 2.45 16 3 C -0.17 -2.68 8.81 71.98 0.63 -2.05 16 4 O -0.58 -12.49 12.31 -148.98 -1.83 -14.32 16 5 C -0.13 -3.10 4.38 30.60 0.13 -2.96 16 6 C 0.06 1.71 4.46 86.30 0.39 2.09 16 7 N -0.54 -19.00 4.66 -896.37 -4.17 -23.18 16 8 C 0.07 2.74 5.29 86.32 0.46 3.19 16 9 C -0.09 -4.66 5.12 30.64 0.16 -4.50 16 10 C 0.04 2.20 2.16 -11.46 -0.02 2.17 16 11 C -0.53 -30.24 8.56 25.60 0.22 -30.03 16 12 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 13 C 0.01 0.66 5.31 84.65 0.45 1.11 16 14 N -0.92 -53.98 11.37 21.45 0.24 -53.74 16 15 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 19 C -0.10 -4.27 5.32 30.65 0.16 -4.10 16 20 C 0.07 2.36 5.46 86.33 0.47 2.83 16 21 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.12 6.43 -2.39 -0.02 1.10 16 24 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 25 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.38 6.24 9.04 -74.06 -0.67 5.57 16 28 H 0.06 1.48 6.43 -2.39 -0.02 1.47 16 29 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.08 2.08 6.27 -2.39 -0.01 2.06 16 31 H 0.02 0.73 7.66 -2.39 -0.02 0.72 16 32 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.08 2.69 6.21 -2.39 -0.01 2.67 16 34 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 3.33 6.18 -2.39 -0.01 3.32 16 36 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 38 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 40 H 0.09 2.63 8.02 -2.39 -0.02 2.61 16 41 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -63.15 313.66 0.22 -62.93 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.31 Total: 13.69 kcal Atomic # 6 Polarization: -35.38 SS G_CDS: 3.64 Total: -31.73 kcal Atomic # 7 Polarization: -72.99 SS G_CDS: -3.93 Total: -76.92 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: -1.83 Total: -14.32 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -63.15 0.22 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397209002.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.481 kcal (2) G-P(sol) polarization free energy of solvation -63.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds