Wall clock time and date at job start Sun Mar 29 2020 22:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46908 * 2 1 4 4 O 1.42908 * 109.47006 * 240.00379 * 2 1 3 5 5 C 1.52997 * 109.47382 * 120.00044 * 2 1 3 6 6 C 1.53001 * 109.47186 * 185.00110 * 5 2 1 7 7 N 1.46900 * 109.47139 * 180.02562 * 6 5 2 8 8 C 1.46929 * 110.98461 * 314.22850 * 7 6 5 9 9 C 1.53037 * 109.47910 * 174.18240 * 8 7 6 10 10 C 1.53114 * 109.31211 * 59.15772 * 9 8 7 11 11 C 1.53126 * 109.16239 * 302.32855 * 10 9 8 12 12 H 1.09006 * 109.49902 * 297.71480 * 11 10 9 13 13 C 1.50701 * 109.50570 * 177.63534 * 11 10 9 14 14 H 1.07997 * 119.99755 * 239.99967 * 13 11 10 15 15 C 1.37878 * 119.99737 * 59.99836 * 13 11 10 16 16 N 1.31516 * 120.00292 * 359.97438 * 15 13 11 17 17 Si 1.86797 * 119.99547 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47230 * 60.00045 * 17 15 13 19 19 H 1.48507 * 109.47026 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47431 * 299.99796 * 17 15 13 21 21 C 1.46850 * 110.99740 * 190.00065 * 7 6 5 22 22 H 1.08995 * 109.46862 * 300.00001 * 1 2 3 23 23 H 1.09001 * 109.47075 * 59.99909 * 1 2 3 24 24 H 1.08999 * 109.46738 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46920 * 180.02562 * 3 2 1 26 26 H 1.09001 * 109.47326 * 299.99937 * 3 2 1 27 27 H 1.08995 * 109.47360 * 60.00304 * 3 2 1 28 28 H 0.96693 * 113.99716 * 299.99483 * 4 2 1 29 29 H 1.08995 * 109.46885 * 64.99932 * 5 2 1 30 30 H 1.08998 * 109.47284 * 305.00195 * 5 2 1 31 31 H 1.08995 * 109.46922 * 59.99790 * 6 5 2 32 32 H 1.09003 * 109.46861 * 299.99800 * 6 5 2 33 33 H 1.08994 * 109.51866 * 54.15475 * 8 7 6 34 34 H 1.09007 * 109.45009 * 294.16157 * 8 7 6 35 35 H 1.09002 * 109.50283 * 299.19589 * 9 8 7 36 36 H 1.09003 * 109.50113 * 179.11776 * 9 8 7 37 37 H 1.09006 * 109.52545 * 62.23190 * 10 9 8 38 38 H 1.08997 * 109.52864 * 182.35913 * 10 9 8 39 39 H 0.97001 * 119.99786 * 179.97438 * 16 15 13 40 40 H 1.08997 * 109.46198 * 65.82029 * 21 7 6 41 41 H 1.08999 * 109.45191 * 305.84745 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.0401 -0.7212 1.2492 6 6 3.5649 -0.6132 1.3136 7 7 4.0547 -1.3062 2.5127 8 6 3.2506 -0.9522 3.6904 9 6 3.6951 -1.7989 4.8851 10 6 5.1795 -1.5448 5.1615 11 6 5.9887 -1.8753 3.9042 12 1 5.8719 -2.9320 3.6637 13 6 7.4446 -1.5728 4.1489 14 1 7.9569 -0.8493 3.5320 15 6 8.1226 -2.2196 5.1603 16 7 7.4986 -3.1002 5.9118 17 14 9.9274 -1.8452 5.4630 18 1 10.0864 -0.4050 5.7884 19 1 10.4196 -2.6660 6.5985 20 1 10.7111 -2.1664 4.2432 21 6 5.4786 -1.0263 2.7375 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 3.1301 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.7211 -1.5951 -1.2330 29 1 1.7517 -1.7714 1.2055 30 1 1.6055 -0.2618 2.1369 31 1 3.8532 0.4370 1.3572 32 1 3.9995 -1.0728 0.4258 33 1 2.1976 -1.1416 3.4827 34 1 3.3908 0.1039 3.9215 35 1 3.5424 -2.8544 4.6600 36 1 3.1095 -1.5255 5.7629 37 1 5.3270 -0.4974 5.4248 38 1 5.5103 -2.1774 5.9853 39 1 7.9758 -3.5556 6.6231 40 1 5.6083 0.0300 2.9730 41 1 6.0430 -1.2696 1.8373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397567607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:22 Heat of formation + Delta-G solvation = -89.131561 kcal Electronic energy + Delta-G solvation = -18249.658585 eV Core-core repulsion = 15548.686725 eV Total energy + Delta-G solvation = -2700.971860 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.30790 -38.95450 -35.80816 -34.08969 -33.01809 -31.75758 -29.55821 -28.27922 -26.92074 -25.27824 -23.41519 -22.41873 -20.90685 -20.33112 -18.42938 -17.44439 -16.94046 -16.42826 -16.33001 -15.60297 -15.29953 -15.12681 -14.84291 -14.34293 -14.14408 -13.99680 -13.59152 -13.15566 -13.08985 -12.88928 -12.83120 -12.78399 -12.62335 -12.57801 -12.29347 -11.99464 -11.74010 -11.66390 -11.48664 -11.31594 -10.88646 -10.68812 -10.65709 -10.36757 -9.09161 -8.08244 -6.22854 1.41127 1.42634 1.50342 2.42554 3.05990 3.18307 3.42519 3.87999 3.95142 4.03135 4.19840 4.23214 4.36852 4.38037 4.53702 4.59982 4.70468 4.74419 4.76521 4.87550 4.90207 4.94040 4.96555 5.05044 5.09206 5.13548 5.19219 5.21342 5.33511 5.39917 5.42255 5.52027 5.62737 5.96437 6.12795 6.21036 6.38967 6.46120 6.89247 6.94013 7.44929 8.96178 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043812 B = 0.004944 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.943820 B = 5661.677248 C = 6005.416975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 C -0.146 4.146 4 O -0.578 6.578 5 C -0.137 4.137 6 C 0.061 3.939 7 N -0.550 5.550 8 C 0.061 3.939 9 C -0.112 4.112 10 C -0.104 4.104 11 C 0.053 3.947 12 H -0.004 1.004 13 C -0.540 4.540 14 H 0.049 0.951 15 C 0.015 3.985 16 N -0.915 5.915 17 Si 0.955 3.045 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.272 1.272 21 C 0.082 3.918 22 H 0.073 0.927 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.388 0.612 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.028 0.972 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.023 0.977 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.261 0.739 40 H 0.012 0.988 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.658 6.156 -8.697 18.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.087 3.913 3 C -0.203 4.203 4 O -0.386 6.386 5 C -0.175 4.175 6 C -0.067 4.067 7 N -0.274 5.274 8 C -0.066 4.066 9 C -0.150 4.150 10 C -0.142 4.142 11 C 0.034 3.966 12 H 0.014 0.986 13 C -0.579 4.579 14 H 0.067 0.933 15 C -0.184 4.184 16 N -0.554 5.554 17 Si 0.780 3.220 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.197 1.197 21 C -0.046 4.046 22 H 0.092 0.908 23 H 0.083 0.917 24 H 0.086 0.914 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.237 0.763 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.046 0.954 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.030 0.970 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.410 6.117 -8.738 17.928 hybrid contribution 1.223 0.253 0.624 1.396 sum -13.187 6.370 -8.113 16.742 Atomic orbital electron populations 1.22415 0.94008 1.03240 1.03158 1.21234 0.93553 0.92564 0.83943 1.21865 1.01405 0.94149 1.02869 1.86516 1.77898 1.30038 1.44180 1.22378 0.94070 1.01969 0.99082 1.22121 0.96196 0.95841 0.92517 1.62032 1.02737 1.58607 1.04059 1.22176 0.98061 0.96444 0.89931 1.21609 0.96403 0.99675 0.97298 1.21459 0.93814 0.98252 1.00691 1.18584 0.93142 0.93704 0.91171 0.98620 1.21498 0.96591 1.23638 1.16139 0.93255 1.25717 1.02243 0.94750 0.95659 1.70028 1.37604 1.27280 1.20487 0.85668 0.80312 0.78265 0.77733 1.19687 1.20730 1.19706 1.21953 0.87532 0.96515 0.98558 0.90766 0.91704 0.91361 0.93153 0.91733 0.90147 0.76292 0.90534 0.89976 0.95414 0.91723 0.88399 0.95907 0.93099 0.91097 0.96060 0.92334 0.93007 0.96957 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 8.82 71.98 0.63 -1.78 16 2 C 0.13 2.44 1.09 -10.79 -0.01 2.43 16 3 C -0.15 -2.87 8.35 71.98 0.60 -2.27 16 4 O -0.58 -12.29 12.52 -148.98 -1.86 -14.16 16 5 C -0.14 -3.01 3.73 30.59 0.11 -2.89 16 6 C 0.06 1.81 4.68 86.30 0.40 2.21 16 7 N -0.55 -20.35 4.81 -896.13 -4.31 -24.66 16 8 C 0.06 2.05 4.85 86.31 0.42 2.47 16 9 C -0.11 -4.34 6.09 30.64 0.19 -4.16 16 10 C -0.10 -5.11 5.02 30.67 0.15 -4.96 16 11 C 0.05 2.79 2.26 -11.48 -0.03 2.76 16 12 H 0.00 -0.26 8.14 -2.38 -0.02 -0.28 16 13 C -0.54 -30.92 8.57 25.60 0.22 -30.70 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 15 C 0.02 0.86 5.30 84.65 0.45 1.31 16 16 N -0.91 -54.01 11.35 21.45 0.24 -53.77 16 17 Si 0.95 44.47 29.54 68.60 2.03 46.49 16 18 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 19 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.08 3.67 4.65 86.33 0.40 4.08 16 22 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.05 1.16 6.35 -2.38 -0.02 1.15 16 26 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.39 5.68 9.04 -74.06 -0.67 5.01 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.67 6.21 -2.39 -0.01 1.66 16 31 H 0.03 0.84 6.28 -2.39 -0.02 0.83 16 32 H 0.06 2.05 7.82 -2.39 -0.02 2.03 16 33 H 0.10 2.62 5.82 -2.39 -0.01 2.61 16 34 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 3.24 6.15 -2.39 -0.01 3.22 16 39 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 2.29 8.12 -2.39 -0.02 2.27 16 Total: -1.00 -64.32 312.51 -0.04 -64.37 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.31 Total: 13.22 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 3.55 Total: -31.50 kcal Atomic # 7 Polarization: -74.36 SS G_CDS: -4.06 Total: -78.42 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: -1.86 Total: -14.16 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -64.32 -0.04 -64.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397567607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.765 kcal (2) G-P(sol) polarization free energy of solvation -64.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds