Wall clock time and date at job start Sun Mar 29 2020 22:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47062 * 2 1 4 4 O 1.42903 * 109.46908 * 240.00622 * 2 1 3 5 5 C 1.52994 * 109.47178 * 120.00334 * 2 1 3 6 6 C 1.53003 * 109.47262 * 184.99913 * 5 2 1 7 7 N 1.46892 * 109.47390 * 179.97438 * 6 5 2 8 8 C 1.46842 * 111.00192 * 293.95474 * 7 6 5 9 9 C 1.53039 * 109.52666 * 185.84212 * 8 7 6 10 10 C 1.53123 * 109.27546 * 300.81951 * 9 8 7 11 11 C 1.53120 * 109.21163 * 57.62218 * 10 9 8 12 12 H 1.09000 * 109.50719 * 62.32149 * 11 10 9 13 13 C 1.50705 * 109.50009 * 182.43636 * 11 10 9 14 14 H 1.08003 * 119.99487 * 120.00018 * 13 11 10 15 15 C 1.37877 * 119.99919 * 299.99707 * 13 11 10 16 16 N 1.31505 * 120.00221 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99678 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47172 * 0.02562 * 17 15 13 19 19 H 1.48491 * 109.47080 * 120.00253 * 17 15 13 20 20 H 1.48504 * 109.46811 * 240.00541 * 17 15 13 21 21 C 1.46848 * 110.99938 * 58.16403 * 7 6 5 22 22 H 1.09002 * 109.47074 * 299.99307 * 1 2 3 23 23 H 1.08997 * 109.47232 * 59.99693 * 1 2 3 24 24 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46800 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47347 * 300.00236 * 3 2 1 27 27 H 1.09002 * 109.46610 * 60.00409 * 3 2 1 28 28 H 0.96707 * 113.99822 * 299.99587 * 4 2 1 29 29 H 1.09001 * 109.47256 * 65.00286 * 5 2 1 30 30 H 1.08991 * 109.47606 * 304.99724 * 5 2 1 31 31 H 1.08997 * 109.47211 * 59.99509 * 6 5 2 32 32 H 1.09004 * 109.46865 * 300.00315 * 6 5 2 33 33 H 1.08997 * 109.46434 * 65.82550 * 8 7 6 34 34 H 1.09006 * 109.45199 * 305.85056 * 8 7 6 35 35 H 1.08999 * 109.50420 * 180.88146 * 9 8 7 36 36 H 1.09002 * 109.53427 * 60.77649 * 9 8 7 37 37 H 1.09002 * 109.52319 * 177.56011 * 10 9 8 38 38 H 1.08995 * 109.52318 * 297.68693 * 10 9 8 39 39 H 0.96996 * 120.00390 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.46555 * 294.17605 * 21 7 6 41 41 H 1.08998 * 109.46337 * 54.15813 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7213 1.2491 6 6 3.5649 -0.6134 1.3136 7 7 4.0545 -1.3054 2.5132 8 6 3.6042 -0.6248 3.7340 9 6 4.2497 -1.2841 4.9550 10 6 3.8559 -2.7632 4.9980 11 6 4.2920 -3.4388 3.6950 12 1 5.3770 -3.3878 3.6039 13 6 3.8545 -4.8809 3.7052 14 1 3.1847 -5.2474 2.9413 15 6 4.3092 -5.7323 4.6897 16 7 5.1243 -5.2859 5.6201 17 14 3.7675 -7.5200 4.7019 18 1 2.8567 -7.7691 3.5557 19 1 4.9587 -8.3990 4.5871 20 1 3.0565 -7.8131 5.9723 21 6 3.6464 -2.7160 2.5105 22 1 -0.3633 0.5137 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8901 28 1 1.7210 -1.5952 -1.2330 29 1 1.7517 -1.7716 1.2054 30 1 1.6055 -0.2619 2.1369 31 1 3.8533 0.4369 1.3572 32 1 3.9994 -1.0728 0.4258 33 1 2.5196 -0.6990 3.8122 34 1 3.8944 0.4251 3.6924 35 1 3.9031 -0.7887 5.8619 36 1 5.3341 -1.1981 4.8850 37 1 4.3483 -3.2468 5.8417 38 1 2.7750 -2.8492 5.1090 39 1 5.4440 -5.8848 6.3130 40 1 2.5615 -2.7804 2.5944 41 1 3.9672 -3.1851 1.5804 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397567608.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:24 Heat of formation + Delta-G solvation = -91.127143 kcal Electronic energy + Delta-G solvation = -18456.234673 eV Core-core repulsion = 15755.176277 eV Total energy + Delta-G solvation = -2701.058395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.43973 -38.88616 -35.78903 -34.11020 -32.99717 -31.67813 -29.34458 -28.24486 -26.93291 -25.52746 -23.23513 -22.57868 -21.28101 -19.98395 -18.44172 -17.39723 -16.89393 -16.36721 -16.19141 -15.74465 -15.54815 -14.84925 -14.70947 -14.54268 -14.03203 -13.85402 -13.69547 -13.17092 -13.07549 -12.91029 -12.89136 -12.81852 -12.68348 -12.55131 -12.43570 -11.91155 -11.70092 -11.60800 -11.41225 -11.37079 -10.92134 -10.77908 -10.64442 -10.37866 -9.00431 -8.07957 -6.22318 1.39839 1.41491 1.52708 2.42653 3.17552 3.19075 3.36296 3.82563 3.97858 4.02244 4.20467 4.26397 4.29612 4.39730 4.55845 4.64816 4.68600 4.71992 4.75882 4.87483 4.90500 4.92270 4.99580 5.05996 5.09303 5.10787 5.20736 5.27580 5.30086 5.39105 5.43600 5.53595 5.63697 5.97791 6.14455 6.23062 6.42498 6.47796 6.86009 6.90970 7.45751 8.96970 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030280 B = 0.005853 C = 0.005229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.483425 B = 4782.748421 C = 5353.668056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.131 3.869 3 C -0.142 4.142 4 O -0.575 6.575 5 C -0.174 4.174 6 C 0.063 3.937 7 N -0.552 5.552 8 C 0.066 3.934 9 C -0.113 4.113 10 C -0.103 4.103 11 C 0.049 3.951 12 H -0.008 1.008 13 C -0.534 4.534 14 H 0.051 0.949 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.085 3.915 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.385 0.615 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.023 0.977 39 H 0.260 0.740 40 H 0.021 0.979 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 12.063 -8.183 16.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.090 3.910 3 C -0.199 4.199 4 O -0.383 6.383 5 C -0.214 4.214 6 C -0.065 4.065 7 N -0.275 5.275 8 C -0.062 4.062 9 C -0.151 4.151 10 C -0.141 4.141 11 C 0.031 3.969 12 H 0.010 0.990 13 C -0.573 4.573 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.780 3.220 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.205 1.205 21 C -0.042 4.042 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.233 0.767 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.039 0.961 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.455 12.606 -8.143 16.757 hybrid contribution -1.125 -1.927 0.458 2.278 sum -8.580 10.679 -7.684 15.707 Atomic orbital electron populations 1.22455 0.94967 1.02631 1.03118 1.21191 0.93019 0.93120 0.83693 1.21837 1.01986 0.93099 1.02942 1.86496 1.77806 1.29824 1.44163 1.22848 0.98340 1.00844 0.99326 1.22223 0.92568 0.99423 0.92262 1.62137 1.60140 1.02449 1.02778 1.22025 0.96877 0.97855 0.89412 1.21609 1.00041 0.96089 0.97319 1.21446 0.97646 0.94013 1.01019 1.18626 0.94133 0.92766 0.91424 0.98980 1.21543 1.28562 0.95865 1.11303 0.93090 1.25726 0.95019 1.02560 0.95216 1.70042 1.33923 1.36422 1.15217 0.85566 0.78130 0.80272 0.78040 1.19123 1.20674 1.20542 1.21911 0.96312 0.87365 0.98635 0.90993 0.91391 0.92424 0.92001 0.91742 0.90001 0.76662 0.92634 0.90939 0.89579 0.91612 0.95090 0.89519 0.91209 0.93375 0.92536 0.95858 0.93085 0.96052 0.93274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.03 8.81 71.98 0.63 -2.39 16 2 C 0.13 2.70 1.09 -10.79 -0.01 2.69 16 3 C -0.14 -2.61 8.35 71.98 0.60 -2.01 16 4 O -0.58 -13.11 12.52 -148.98 -1.86 -14.98 16 5 C -0.17 -4.33 3.78 30.59 0.12 -4.21 16 6 C 0.06 1.80 4.77 86.31 0.41 2.21 16 7 N -0.55 -20.02 4.86 -896.36 -4.36 -24.38 16 8 C 0.07 2.19 5.05 86.33 0.44 2.62 16 9 C -0.11 -4.38 6.10 30.65 0.19 -4.19 16 10 C -0.10 -5.01 5.02 30.68 0.15 -4.86 16 11 C 0.05 2.57 2.27 -11.48 -0.03 2.54 16 12 H -0.01 -0.48 8.14 -2.39 -0.02 -0.49 16 13 C -0.53 -30.06 8.57 25.60 0.22 -29.84 16 14 H 0.05 2.81 7.75 -2.91 -0.02 2.79 16 15 C 0.01 0.75 5.30 84.66 0.45 1.20 16 16 N -0.92 -53.99 11.35 21.45 0.24 -53.75 16 17 Si 0.95 44.08 29.54 68.60 2.03 46.11 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 21 C 0.09 3.65 4.06 86.33 0.35 4.00 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.22 6.35 -2.39 -0.02 1.21 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.38 6.89 9.05 -74.05 -0.67 6.22 16 29 H 0.05 1.55 6.51 -2.39 -0.02 1.54 16 30 H 0.07 1.77 6.68 -2.39 -0.02 1.75 16 31 H 0.09 2.18 6.26 -2.39 -0.01 2.16 16 32 H 0.07 2.01 7.82 -2.38 -0.02 2.00 16 33 H 0.03 1.00 6.75 -2.39 -0.02 0.98 16 34 H 0.09 2.39 8.06 -2.38 -0.02 2.37 16 35 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 3.12 6.15 -2.39 -0.01 3.11 16 38 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.02 0.90 6.61 -2.39 -0.02 0.89 16 41 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 Total: -1.00 -63.02 310.44 -0.11 -63.13 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.32 Total: 16.09 kcal Atomic # 6 Polarization: -35.75 SS G_CDS: 3.52 Total: -32.23 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -4.11 Total: -78.13 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -1.86 Total: -14.98 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -63.02 -0.11 -63.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397567608.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.992 kcal (2) G-P(sol) polarization free energy of solvation -63.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds