Wall clock time and date at job start Sun Mar 29 2020 22:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 C 1.53006 * 109.47177 * 240.00503 * 2 1 3 5 5 H 1.09008 * 109.47062 * 59.99689 * 4 2 1 6 6 O 1.42894 * 109.47087 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.46796 * 299.99662 * 4 2 1 8 8 N 1.46905 * 109.46863 * 182.43141 * 7 4 2 9 9 C 1.46852 * 110.99835 * 293.89757 * 8 7 4 10 10 C 1.53040 * 109.52217 * 174.16107 * 9 8 7 11 11 C 1.53124 * 109.27758 * 59.18097 * 10 9 8 12 12 C 1.53126 * 109.16140 * 302.34672 * 11 10 9 13 13 H 1.09004 * 109.50214 * 297.71646 * 12 11 10 14 14 C 1.50691 * 109.50291 * 177.59334 * 12 11 10 15 15 H 1.07999 * 120.00355 * 239.99394 * 14 12 11 16 16 C 1.37876 * 119.99976 * 60.00258 * 14 12 11 17 17 N 1.31517 * 120.00351 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00022 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46930 * 60.00155 * 18 16 14 20 20 H 1.48504 * 109.46934 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47262 * 299.99579 * 18 16 14 22 22 C 1.46846 * 110.99632 * 169.69323 * 8 7 4 23 23 H 1.09003 * 109.47531 * 60.00054 * 1 2 3 24 24 H 1.09000 * 109.47267 * 299.99481 * 1 2 3 25 25 H 1.08999 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47551 * 120.00396 * 2 1 3 27 27 H 1.09000 * 109.46741 * 60.00196 * 3 2 1 28 28 H 1.08997 * 109.46899 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46989 * 300.00278 * 3 2 1 30 30 H 0.96700 * 114.00491 * 59.99937 * 6 4 2 31 31 H 1.08994 * 109.47513 * 302.43055 * 7 4 2 32 32 H 1.09003 * 109.47274 * 62.43212 * 7 4 2 33 33 H 1.08997 * 109.46443 * 294.17508 * 9 8 7 34 34 H 1.09002 * 109.46323 * 54.15886 * 9 8 7 35 35 H 1.08990 * 109.50343 * 179.12008 * 10 9 8 36 36 H 1.08998 * 109.50027 * 299.24543 * 10 9 8 37 37 H 1.09002 * 109.52465 * 62.24697 * 11 10 9 38 38 H 1.08999 * 109.52457 * 182.38304 * 11 10 9 39 39 H 0.96991 * 120.00452 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.46629 * 305.84958 * 22 8 7 41 41 H 1.08998 * 109.46612 * 65.82628 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2072 -2.1393 6 8 3.4690 -0.7206 -1.2496 7 6 1.5301 -2.1636 -1.2494 8 7 2.0672 -2.8728 -2.4184 9 6 1.5302 -2.3136 -3.6656 10 6 2.2186 -2.9760 -4.8612 11 6 1.9754 -4.4870 -4.8111 12 6 2.5001 -5.0367 -3.4818 13 1 3.5757 -4.8713 -3.4187 14 6 2.2116 -6.5135 -3.3990 15 1 1.5959 -6.8995 -2.6001 16 6 2.7338 -7.3719 -4.3432 17 7 3.4834 -6.9018 -5.3163 18 14 2.3767 -9.2026 -4.2403 19 1 0.9111 -9.4264 -4.3235 20 1 3.0485 -9.9019 -5.3650 21 1 2.8864 -9.7346 -2.9509 22 6 1.8036 -4.3145 -2.3262 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 0.8898 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.8627 -1.1621 -0.4847 31 1 1.8574 -2.6648 -0.3385 32 1 0.4409 -2.1640 -1.2929 33 1 0.4575 -2.5002 -3.7151 34 1 1.7136 -1.2394 -3.6906 35 1 1.8088 -2.5720 -5.7868 36 1 3.2897 -2.7783 -4.8198 37 1 0.9069 -4.6869 -4.8915 38 1 2.4992 -4.9679 -5.6373 39 1 3.8510 -7.5057 -5.9803 40 1 2.1853 -4.6936 -1.3782 41 1 0.7295 -4.4917 -2.3820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397629855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:51 Heat of formation + Delta-G solvation = -72.641227 kcal Electronic energy + Delta-G solvation = -18364.158895 eV Core-core repulsion = 15663.902109 eV Total energy + Delta-G solvation = -2700.256786 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.98075 -37.21986 -34.06245 -33.54467 -31.62955 -29.86621 -27.95464 -26.84528 -24.92529 -23.60571 -21.70647 -21.09439 -20.18369 -18.54748 -16.57420 -16.17329 -15.49797 -15.04650 -14.80614 -14.36800 -14.05172 -13.52243 -13.32654 -12.91043 -12.79699 -12.43511 -12.32997 -12.09571 -11.92456 -11.60683 -11.48462 -11.04664 -10.99439 -10.91111 -10.71574 -10.66284 -10.42749 -10.02291 -9.82359 -9.66593 -9.38195 -8.92219 -8.66244 -8.25811 -7.54540 -5.93464 -3.99975 3.34081 3.38862 3.41017 4.26115 4.48619 4.62008 4.77902 4.92355 5.08333 5.25860 5.36051 5.41848 5.52187 5.58820 5.70479 5.75305 5.79296 5.84724 5.94020 5.97622 6.00195 6.13928 6.20271 6.28825 6.37070 6.46299 6.55960 6.78809 6.81369 7.02360 7.28580 7.45208 7.73381 7.78812 7.83949 7.97696 8.13790 8.22721 8.52485 9.04014 9.64011 11.12361 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.005142 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.695365 B = 5444.441594 C = 5653.473981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.141 4.141 4 C 0.116 3.884 5 H 0.093 0.907 6 O -0.545 6.545 7 C 0.021 3.979 8 N -0.527 5.527 9 C 0.063 3.937 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.034 0.966 14 C -0.516 4.516 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.279 1.279 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.068 3.932 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.369 0.631 31 H 0.070 0.930 32 H 0.035 0.965 33 H 0.019 0.981 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.028 0.972 38 H 0.090 0.910 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.458 13.073 8.449 16.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.198 4.198 4 C 0.057 3.943 5 H 0.111 0.889 6 O -0.349 6.349 7 C -0.108 4.108 8 N -0.251 5.251 9 C -0.064 4.064 10 C -0.154 4.154 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.070 0.930 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.059 4.059 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.216 0.784 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.108 0.892 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.941 13.394 7.712 15.950 hybrid contribution -1.178 -1.484 0.591 1.985 sum -5.120 11.910 8.302 15.394 Atomic orbital electron populations 1.21860 0.94902 1.02129 1.01735 1.21845 0.96403 0.97371 0.99179 1.21738 1.01716 0.95202 1.01169 1.21955 0.81511 0.93946 0.96922 0.88926 1.86587 1.18381 1.80365 1.49529 1.22851 0.97315 0.95219 0.95391 1.61918 1.58525 1.04271 1.00427 1.22043 0.95672 0.97896 0.90833 1.21660 1.00441 0.98640 0.94701 1.21650 0.99017 0.91127 1.03020 1.18648 0.96004 0.92772 0.88884 0.94745 1.21116 1.31350 0.91916 1.11065 0.92998 1.24931 0.95009 0.98442 0.95405 1.69883 1.33761 1.34655 1.14366 0.86699 0.78354 0.85623 0.77522 1.20433 1.21310 1.20326 1.22314 0.97553 0.84880 1.01136 0.92621 0.92707 0.92204 0.91087 0.93166 0.91961 0.92870 0.78425 0.91178 0.94721 0.96326 0.92350 0.93703 0.91973 0.95329 0.89152 0.93019 0.92517 0.96602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.84 37.16 0.33 -1.07 16 2 C -0.13 -1.30 2.69 -90.61 -0.24 -1.55 16 3 C -0.14 -1.34 9.05 37.16 0.34 -1.00 16 4 C 0.12 1.50 2.39 -26.73 -0.06 1.44 16 5 H 0.09 1.28 6.55 -51.92 -0.34 0.94 16 6 O -0.54 -7.76 12.48 -35.23 -0.44 -8.20 16 7 C 0.02 0.31 4.21 -3.82 -0.02 0.29 16 8 N -0.53 -9.93 4.48 -234.66 -1.05 -10.99 16 9 C 0.06 1.17 5.29 -3.83 -0.02 1.15 16 10 C -0.12 -2.39 6.09 -26.65 -0.16 -2.55 16 11 C -0.11 -2.68 5.02 -26.60 -0.13 -2.81 16 12 C 0.06 1.42 2.26 -91.69 -0.21 1.22 16 13 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 14 C -0.52 -14.33 8.56 -34.44 -0.29 -14.63 16 15 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 17 N -0.89 -25.67 11.35 55.43 0.63 -25.04 16 18 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.07 1.48 4.68 -3.83 -0.02 1.46 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.59 6.48 -51.93 -0.34 0.25 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.62 7.68 -51.93 -0.40 0.22 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.37 4.20 9.05 45.56 0.41 4.61 16 31 H 0.07 0.99 7.98 -51.93 -0.41 0.58 16 32 H 0.03 0.50 6.54 -51.93 -0.34 0.16 16 33 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.98 6.27 -51.93 -0.33 0.65 16 35 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.06 1.21 8.01 -51.93 -0.42 0.79 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -29.33 313.90 -8.41 -37.74 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: -6.67 Total: 1.74 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -0.59 Total: -16.38 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.42 Total: -36.03 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.44 Total: -8.20 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.33 -8.41 -37.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397629855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.904 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds