Wall clock time and date at job start Sun Mar 29 2020 22:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46891 * 2 1 4 4 C 1.53006 * 109.47177 * 240.00503 * 2 1 3 5 5 H 1.09008 * 109.47062 * 59.99689 * 4 2 1 6 6 O 1.42894 * 109.47087 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.46796 * 299.99662 * 4 2 1 8 8 N 1.46905 * 109.46863 * 182.43141 * 7 4 2 9 9 C 1.46852 * 110.99835 * 293.89757 * 8 7 4 10 10 C 1.53040 * 109.52217 * 174.16107 * 9 8 7 11 11 C 1.53124 * 109.27758 * 59.18097 * 10 9 8 12 12 C 1.53126 * 109.16140 * 302.34672 * 11 10 9 13 13 H 1.09004 * 109.50214 * 297.71646 * 12 11 10 14 14 C 1.50691 * 109.50291 * 177.59334 * 12 11 10 15 15 H 1.07999 * 120.00355 * 239.99394 * 14 12 11 16 16 C 1.37876 * 119.99976 * 60.00258 * 14 12 11 17 17 N 1.31517 * 120.00351 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 120.00022 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46930 * 60.00155 * 18 16 14 20 20 H 1.48504 * 109.46934 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47262 * 299.99579 * 18 16 14 22 22 C 1.46846 * 110.99632 * 169.69323 * 8 7 4 23 23 H 1.09003 * 109.47531 * 60.00054 * 1 2 3 24 24 H 1.09000 * 109.47267 * 299.99481 * 1 2 3 25 25 H 1.08999 * 109.46894 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47551 * 120.00396 * 2 1 3 27 27 H 1.09000 * 109.46741 * 60.00196 * 3 2 1 28 28 H 1.08997 * 109.46899 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46989 * 300.00278 * 3 2 1 30 30 H 0.96700 * 114.00491 * 59.99937 * 6 4 2 31 31 H 1.08994 * 109.47513 * 302.43055 * 7 4 2 32 32 H 1.09003 * 109.47274 * 62.43212 * 7 4 2 33 33 H 1.08997 * 109.46443 * 294.17508 * 9 8 7 34 34 H 1.09002 * 109.46323 * 54.15886 * 9 8 7 35 35 H 1.08990 * 109.50343 * 179.12008 * 10 9 8 36 36 H 1.08998 * 109.50027 * 299.24543 * 10 9 8 37 37 H 1.09002 * 109.52465 * 62.24697 * 11 10 9 38 38 H 1.08999 * 109.52457 * 182.38304 * 11 10 9 39 39 H 0.96991 * 120.00452 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.46629 * 305.84958 * 22 8 7 41 41 H 1.08998 * 109.46612 * 65.82628 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6766 -0.2072 -2.1393 6 8 3.4690 -0.7206 -1.2496 7 6 1.5301 -2.1636 -1.2494 8 7 2.0672 -2.8728 -2.4184 9 6 1.5302 -2.3136 -3.6656 10 6 2.2186 -2.9760 -4.8612 11 6 1.9754 -4.4870 -4.8111 12 6 2.5001 -5.0367 -3.4818 13 1 3.5757 -4.8713 -3.4187 14 6 2.2116 -6.5135 -3.3990 15 1 1.5959 -6.8995 -2.6001 16 6 2.7338 -7.3719 -4.3432 17 7 3.4834 -6.9018 -5.3163 18 14 2.3767 -9.2026 -4.2403 19 1 0.9111 -9.4264 -4.3235 20 1 3.0485 -9.9019 -5.3650 21 1 2.8864 -9.7346 -2.9509 22 6 1.8036 -4.3145 -2.3262 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5137 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 0.8898 27 1 1.6766 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 3.8627 -1.1621 -0.4847 31 1 1.8574 -2.6648 -0.3385 32 1 0.4409 -2.1640 -1.2929 33 1 0.4575 -2.5002 -3.7151 34 1 1.7136 -1.2394 -3.6906 35 1 1.8088 -2.5720 -5.7868 36 1 3.2897 -2.7783 -4.8198 37 1 0.9069 -4.6869 -4.8915 38 1 2.4992 -4.9679 -5.6373 39 1 3.8510 -7.5057 -5.9803 40 1 2.1853 -4.6936 -1.3782 41 1 0.7295 -4.4917 -2.3820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397629855.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:50 Heat of formation + Delta-G solvation = -92.459745 kcal Electronic energy + Delta-G solvation = -18365.018290 eV Core-core repulsion = 15663.902109 eV Total energy + Delta-G solvation = -2701.116181 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.29717 -38.58586 -35.41212 -34.97602 -33.38815 -31.71336 -29.13349 -27.69369 -26.91519 -24.98701 -23.40564 -22.49355 -21.19428 -20.35937 -18.45246 -17.40978 -16.83134 -16.43996 -16.33718 -15.87394 -15.21337 -14.99399 -14.73189 -14.43296 -14.29651 -13.96551 -13.60556 -13.26783 -13.05010 -12.84436 -12.81045 -12.72282 -12.55179 -12.49920 -12.04170 -11.85146 -11.76642 -11.72848 -11.53817 -11.29690 -10.94803 -10.66881 -10.51001 -10.34397 -9.03822 -8.07016 -6.22002 1.41783 1.43320 1.50984 2.43111 3.01346 3.19532 3.68482 3.75197 4.01152 4.13813 4.18615 4.22269 4.35940 4.40737 4.52937 4.61672 4.66193 4.73123 4.79566 4.84618 4.88807 4.94929 4.99915 5.02307 5.09780 5.12728 5.17934 5.25523 5.39252 5.46248 5.48821 5.52277 5.63261 5.97159 6.12777 6.21985 6.38212 6.46739 6.90842 7.00263 7.45996 8.97448 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.043488 B = 0.005142 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.695365 B = 5444.441594 C = 5653.473981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.123 3.877 5 H 0.086 0.914 6 O -0.564 6.564 7 C 0.022 3.978 8 N -0.539 5.539 9 C 0.068 3.932 10 C -0.110 4.110 11 C -0.103 4.103 12 C 0.053 3.947 13 H -0.006 1.006 14 C -0.538 4.538 15 H 0.052 0.948 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.955 3.045 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.082 3.918 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.380 0.620 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.046 0.954 37 H 0.022 0.978 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.056 0.944 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 13.921 9.650 17.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.196 4.196 4 C 0.063 3.937 5 H 0.104 0.896 6 O -0.370 6.370 7 C -0.106 4.106 8 N -0.264 5.264 9 C -0.060 4.060 10 C -0.148 4.148 11 C -0.141 4.141 12 C 0.034 3.966 13 H 0.012 0.988 14 C -0.577 4.577 15 H 0.070 0.930 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.045 4.045 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.229 0.771 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -5.084 14.255 8.933 17.574 hybrid contribution -0.791 -1.722 0.222 1.908 sum -5.875 12.533 9.156 16.596 Atomic orbital electron populations 1.21860 0.94131 1.02044 1.02522 1.21760 0.96920 0.97426 0.97869 1.21715 1.01245 0.94807 1.01820 1.21927 0.80953 0.92658 0.98161 0.89649 1.86553 1.19216 1.80642 1.50591 1.22964 0.97874 0.96010 0.93734 1.61846 1.59515 1.02854 1.02144 1.22008 0.95550 0.98814 0.89593 1.21571 0.99984 0.96044 0.97218 1.21458 0.97798 0.93745 1.01111 1.18573 0.93957 0.92756 0.91290 0.98782 1.21498 1.31514 0.93457 1.11193 0.92990 1.25742 0.94768 1.02988 0.95001 1.70038 1.34489 1.36094 1.14922 0.85659 0.78435 0.80118 0.77704 1.19649 1.20942 1.19576 1.21976 0.96589 0.86720 0.99223 0.92576 0.91270 0.92692 0.90255 0.91636 0.92687 0.93119 0.77145 0.90510 0.93727 0.95713 0.89999 0.91405 0.93493 0.95915 0.92447 0.93068 0.92527 0.96874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 8.84 71.98 0.64 -1.72 16 2 C -0.12 -2.12 2.69 -10.79 -0.03 -2.15 16 3 C -0.14 -2.29 9.05 71.98 0.65 -1.64 16 4 C 0.12 2.89 2.39 30.60 0.07 2.97 16 5 H 0.09 2.15 6.55 -2.38 -0.02 2.14 16 6 O -0.56 -15.19 12.48 -148.98 -1.86 -17.05 16 7 C 0.02 0.61 4.21 86.30 0.36 0.97 16 8 N -0.54 -19.78 4.48 -896.33 -4.01 -23.79 16 9 C 0.07 2.40 5.29 86.33 0.46 2.86 16 10 C -0.11 -4.49 6.09 30.65 0.19 -4.31 16 11 C -0.10 -5.12 5.02 30.68 0.15 -4.97 16 12 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 13 H -0.01 -0.36 8.14 -2.38 -0.02 -0.38 16 14 C -0.54 -30.47 8.56 25.60 0.22 -30.25 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 16 C 0.01 0.78 5.30 84.65 0.45 1.23 16 17 N -0.92 -54.36 11.35 21.45 0.24 -54.12 16 18 Si 0.96 44.23 29.54 68.60 2.03 46.25 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 C 0.08 3.57 4.68 86.33 0.40 3.98 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.05 0.93 6.48 -2.39 -0.02 0.91 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.99 7.68 -2.39 -0.02 0.97 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.38 8.10 9.05 -74.06 -0.67 7.43 16 31 H 0.08 2.02 7.98 -2.39 -0.02 2.00 16 32 H 0.04 1.17 6.54 -2.39 -0.02 1.16 16 33 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.08 2.54 6.27 -2.39 -0.01 2.53 16 35 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 3.22 6.15 -2.39 -0.01 3.21 16 39 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 40 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 41 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -63.55 313.90 0.25 -63.30 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.31 Total: 15.66 kcal Atomic # 6 Polarization: -33.80 SS G_CDS: 3.54 Total: -30.26 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -3.77 Total: -77.91 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.86 Total: -17.05 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.55 0.25 -63.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397629855.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.160 kcal (2) G-P(sol) polarization free energy of solvation -63.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds