Wall clock time and date at job start Sun Mar 29 2020 22:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47015 * 2 1 4 4 C 1.52997 * 109.47107 * 239.99963 * 2 1 3 5 5 H 1.08997 * 109.47288 * 60.00330 * 4 2 1 6 6 O 1.42899 * 109.47059 * 299.99929 * 4 2 1 7 7 C 1.53007 * 109.47128 * 179.97438 * 4 2 1 8 8 N 1.46894 * 109.47122 * 179.97438 * 7 4 2 9 9 C 1.46847 * 111.00035 * 199.96833 * 8 7 4 10 10 C 1.53040 * 109.52340 * 174.16270 * 9 8 7 11 11 C 1.53119 * 109.27882 * 59.17761 * 10 9 8 12 12 C 1.53117 * 109.16091 * 302.34652 * 11 10 9 13 13 H 1.09002 * 109.50423 * 297.71155 * 12 11 10 14 14 C 1.50700 * 109.50300 * 177.59575 * 12 11 10 15 15 H 1.08004 * 119.99952 * 240.20021 * 14 12 11 16 16 C 1.37881 * 120.00200 * 60.19196 * 14 12 11 17 17 N 1.31516 * 119.99662 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 120.00132 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47073 * 90.00411 * 18 16 14 20 20 H 1.48503 * 109.47030 * 210.00528 * 18 16 14 21 21 H 1.48503 * 109.46776 * 330.00188 * 18 16 14 22 22 C 1.46846 * 111.00130 * 75.75758 * 8 7 4 23 23 H 1.09003 * 109.47629 * 60.00105 * 1 2 3 24 24 H 1.09001 * 109.47228 * 300.00309 * 1 2 3 25 25 H 1.09004 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47471 * 119.99771 * 2 1 3 27 27 H 1.09000 * 109.47009 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.46807 * 299.99656 * 3 2 1 29 29 H 1.08997 * 109.46941 * 59.99597 * 3 2 1 30 30 H 0.96698 * 113.99833 * 299.99942 * 6 4 2 31 31 H 1.09002 * 109.47217 * 299.94941 * 7 4 2 32 32 H 1.09005 * 109.46861 * 59.95198 * 7 4 2 33 33 H 1.09003 * 109.46142 * 294.17871 * 9 8 7 34 34 H 1.08995 * 109.46306 * 54.14602 * 9 8 7 35 35 H 1.09004 * 109.50245 * 299.23849 * 10 9 8 36 36 H 1.09002 * 109.50239 * 179.12211 * 10 9 8 37 37 H 1.09002 * 109.52396 * 182.43998 * 11 10 9 38 38 H 1.09007 * 109.57421 * 62.28394 * 11 10 9 39 39 H 0.97001 * 119.99701 * 179.97438 * 17 16 14 40 40 H 1.09000 * 109.46389 * 305.85979 * 22 8 7 41 41 H 1.09008 * 109.46225 * 65.83388 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 1 1.6767 -0.2074 -2.1392 6 8 1.5636 -2.0685 -1.2492 7 6 3.5700 -0.7207 -1.2495 8 7 4.0597 -1.4137 -2.4486 9 6 5.4501 -1.8519 -2.2723 10 6 5.8780 -2.6930 -3.4771 11 6 5.7450 -1.8549 -4.7516 12 6 4.2986 -1.3708 -4.8862 13 1 3.6348 -2.2299 -4.9832 14 6 4.1723 -0.4961 -6.1068 15 1 3.8516 0.5302 -6.0049 16 6 4.4663 -1.0058 -7.3537 17 7 4.8565 -2.2556 -7.4778 18 14 4.3104 0.0786 -8.8667 19 1 5.6020 0.7671 -9.1174 20 1 3.9595 -0.7587 -10.0418 21 1 3.2457 1.0895 -8.6435 22 6 3.9165 -0.5680 -3.6406 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 0.8899 27 1 3.1300 1.4426 -0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6765 1.9564 0.8899 30 1 1.8490 -2.5865 -0.4841 31 1 3.9330 0.3071 -1.2507 32 1 3.9337 -1.2335 -0.3591 33 1 6.0982 -0.9793 -2.1900 34 1 5.5300 -2.4503 -1.3648 35 1 5.2390 -3.5730 -3.5519 36 1 6.9150 -3.0050 -3.3532 37 1 6.0074 -2.4636 -5.6169 38 1 6.4130 -0.9953 -4.6948 39 1 5.0630 -2.6144 -8.3551 40 1 2.8826 -0.2339 -3.7268 41 1 4.5720 0.2985 -3.5519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397629861.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:38:56 Heat of formation + Delta-G solvation = -93.290908 kcal Electronic energy + Delta-G solvation = -18452.913480 eV Core-core repulsion = 15751.761257 eV Total energy + Delta-G solvation = -2701.152223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.25799 -38.60282 -35.43070 -34.98920 -33.40187 -31.69202 -29.11430 -27.69189 -26.96314 -25.04827 -23.16872 -22.64156 -21.22692 -20.35360 -18.46613 -17.38354 -16.92914 -16.37773 -16.31224 -15.85865 -15.29268 -15.03489 -14.67905 -14.42149 -14.14579 -13.97474 -13.69324 -13.23054 -13.06067 -12.93073 -12.83949 -12.73197 -12.55619 -12.45225 -12.09145 -11.82529 -11.78773 -11.70670 -11.43042 -11.35576 -10.93679 -10.71923 -10.48736 -10.37161 -9.01997 -8.08506 -6.23068 1.39813 1.40579 1.51051 2.42047 3.01823 3.18159 3.68446 3.78613 4.02108 4.18240 4.19047 4.24218 4.28949 4.46663 4.52533 4.59438 4.67821 4.72969 4.80462 4.84511 4.88977 4.91483 5.01330 5.01738 5.10490 5.11929 5.19928 5.23222 5.40139 5.44565 5.49279 5.52566 5.62514 5.96815 6.13923 6.21408 6.40649 6.46604 6.89810 7.07003 7.44741 8.96394 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026186 B = 0.006197 C = 0.005505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.020476 B = 4517.454721 C = 5084.905046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C -0.149 4.149 4 C 0.120 3.880 5 H 0.065 0.935 6 O -0.565 6.565 7 C 0.024 3.976 8 N -0.542 5.542 9 C 0.067 3.933 10 C -0.111 4.111 11 C -0.103 4.103 12 C 0.053 3.947 13 H -0.009 1.009 14 C -0.538 4.538 15 H 0.050 0.950 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.955 3.045 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.086 3.914 23 H 0.041 0.959 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.059 0.941 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.381 0.619 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.022 0.978 39 H 0.260 0.740 40 H 0.048 0.952 41 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.715 3.865 16.964 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.136 4.136 3 C -0.206 4.206 4 C 0.061 3.939 5 H 0.083 0.917 6 O -0.371 6.371 7 C -0.104 4.104 8 N -0.266 5.266 9 C -0.061 4.061 10 C -0.149 4.149 11 C -0.142 4.142 12 C 0.034 3.966 13 H 0.009 0.991 14 C -0.577 4.577 15 H 0.068 0.932 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.780 3.220 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.194 1.194 22 C -0.041 4.041 23 H 0.060 0.940 24 H 0.087 0.913 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.078 0.922 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.229 0.771 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.043 0.957 34 H 0.109 0.891 35 H 0.066 0.934 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges -3.222 3.514 16.209 16.896 hybrid contribution 0.702 0.965 -0.785 1.429 sum -2.519 4.479 15.424 16.257 Atomic orbital electron populations 1.21732 0.94494 1.01995 1.01562 1.21739 0.96853 0.97133 0.97867 1.21872 1.01290 0.95239 1.02207 1.21870 0.91563 0.82938 0.97562 0.91740 1.86618 1.76333 1.23696 1.50435 1.22953 0.96568 0.97684 0.93201 1.61821 1.20803 1.41225 1.02771 1.22054 0.87710 0.97810 0.98480 1.21584 1.00135 0.98275 0.94865 1.21453 0.97901 0.97781 0.97040 1.18568 0.93063 0.93867 0.91101 0.99072 1.21530 1.45382 0.97868 0.92877 0.93216 1.25740 0.94780 0.96238 1.01757 1.70047 1.46456 1.15002 1.24020 0.85608 0.78579 0.78807 0.78975 1.19914 1.20784 1.19380 1.21927 0.98372 0.93326 0.90513 0.94020 0.91269 0.92569 0.89177 0.92228 0.93597 0.90922 0.77121 0.93759 0.88793 0.95650 0.89054 0.93368 0.91114 0.92530 0.95877 0.93045 0.93369 0.96915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.05 71.98 0.65 -2.05 16 2 C -0.12 -2.24 2.69 -10.79 -0.03 -2.27 16 3 C -0.15 -2.68 8.84 71.98 0.64 -2.04 16 4 C 0.12 3.23 2.60 30.60 0.08 3.31 16 5 H 0.06 2.15 6.84 -2.39 -0.02 2.13 16 6 O -0.56 -16.41 12.53 -148.98 -1.87 -18.28 16 7 C 0.02 0.65 4.31 86.31 0.37 1.02 16 8 N -0.54 -19.80 4.45 -896.35 -3.99 -23.78 16 9 C 0.07 2.24 5.43 86.33 0.47 2.71 16 10 C -0.11 -4.37 6.09 30.65 0.19 -4.18 16 11 C -0.10 -5.15 5.03 30.67 0.15 -4.99 16 12 C 0.05 2.83 2.26 -11.49 -0.03 2.80 16 13 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 14 C -0.54 -31.08 8.56 25.60 0.22 -30.86 16 15 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 16 C 0.01 0.78 5.30 84.66 0.45 1.23 16 17 N -0.92 -54.88 11.36 21.45 0.24 -54.64 16 18 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 C 0.09 3.84 4.51 86.32 0.39 4.23 16 23 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.14 7.68 -2.38 -0.02 1.12 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.06 6.43 -2.39 -0.02 1.04 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.38 7.77 9.05 -74.06 -0.67 7.10 16 31 H 0.04 1.19 6.29 -2.39 -0.02 1.17 16 32 H 0.09 2.03 7.79 -2.38 -0.02 2.01 16 33 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.09 2.45 7.93 -2.39 -0.02 2.43 16 35 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.06 3.17 6.17 -2.39 -0.01 3.16 16 38 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 40 H 0.05 2.19 6.72 -2.39 -0.02 2.18 16 41 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 Total: -1.00 -66.11 314.39 0.28 -65.83 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.31 Total: 15.05 kcal Atomic # 6 Polarization: -34.65 SS G_CDS: 3.55 Total: -31.10 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.75 Total: -78.42 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.87 Total: -18.28 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -66.11 0.28 -65.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397629861.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.459 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds