Wall clock time and date at job start Sun Mar 29 2020 23:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47237 * 2 1 4 4 H 1.09003 * 109.47174 * 54.50815 * 3 2 1 5 5 C 1.52999 * 109.47712 * 174.51592 * 3 2 1 6 6 N 1.46897 * 109.46990 * 79.29735 * 5 3 2 7 7 C 1.46848 * 111.00160 * 78.32937 * 6 5 3 8 8 C 1.53035 * 109.52563 * 174.15637 * 7 6 5 9 9 C 1.53123 * 109.27447 * 59.18390 * 8 7 6 10 10 C 1.53112 * 109.16189 * 302.34314 * 9 8 7 11 11 H 1.09001 * 109.50581 * 297.71794 * 10 9 8 12 12 C 1.50696 * 109.50470 * 177.59346 * 10 9 8 13 13 H 1.08002 * 120.00761 * 240.00105 * 12 10 9 14 14 C 1.37883 * 119.99697 * 60.00506 * 12 10 9 15 15 N 1.31514 * 119.99791 * 359.97438 * 14 12 10 16 16 Si 1.86803 * 119.99803 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47059 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.46915 * 119.99871 * 16 14 12 19 19 H 1.48500 * 109.46757 * 239.99241 * 16 14 12 20 20 C 1.46848 * 111.00118 * 314.12274 * 6 5 3 21 21 O 1.42903 * 109.46883 * 294.51668 * 3 2 1 22 22 C 1.42902 * 114.00072 * 144.95860 * 21 3 2 23 23 H 1.09000 * 109.47161 * 60.00520 * 1 2 3 24 24 H 1.09007 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47127 * 299.99934 * 1 2 3 26 26 H 1.09002 * 109.47613 * 240.00091 * 2 1 3 27 27 H 1.09000 * 109.47161 * 119.99480 * 2 1 3 28 28 H 1.08996 * 109.47129 * 199.30074 * 5 3 2 29 29 H 1.09002 * 109.46688 * 319.30220 * 5 3 2 30 30 H 1.09002 * 109.46735 * 294.17986 * 7 6 5 31 31 H 1.09004 * 109.45773 * 54.15405 * 7 6 5 32 32 H 1.09001 * 109.50435 * 179.11951 * 8 7 6 33 33 H 1.08996 * 109.50504 * 299.24194 * 8 7 6 34 34 H 1.09001 * 109.52098 * 62.25030 * 9 8 7 35 35 H 1.08999 * 109.52073 * 182.37580 * 9 8 7 36 36 H 0.96999 * 119.99482 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46485 * 305.85363 * 20 6 5 38 38 H 1.09002 * 109.46397 * 65.82512 * 20 6 5 39 39 H 1.08999 * 109.47050 * 54.78840 * 22 21 3 40 40 H 1.09001 * 109.47521 * 174.79032 * 22 21 3 41 41 H 1.09001 * 109.47335 * 294.79099 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5986 1.9840 0.8367 5 6 3.5638 1.4448 0.1379 6 7 4.1737 1.1451 -1.1645 7 6 4.1642 2.3279 -2.0347 8 6 4.9340 2.0223 -3.3216 9 6 4.2774 0.8364 -4.0338 10 6 4.2564 -0.3683 -3.0889 11 1 5.2786 -0.6544 -2.8412 12 6 3.5587 -1.5227 -3.7609 13 1 2.6708 -1.9491 -3.3178 14 6 4.0539 -2.0346 -4.9416 15 7 5.1347 -1.5151 -5.4814 16 14 3.1894 -3.4660 -5.7742 17 1 2.0062 -3.8649 -4.9706 18 1 2.7508 -3.0568 -7.1327 19 1 4.1247 -4.6145 -5.8811 20 6 3.5063 0.0067 -1.8087 21 8 1.6717 2.0779 -1.2259 22 6 1.3542 3.4645 -1.0893 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 3.8964 2.4256 0.4778 29 1 3.8641 0.6879 0.8625 30 1 3.1351 2.5898 -2.2805 31 1 4.6379 3.1627 -1.5180 32 1 4.9134 2.8953 -3.9740 33 1 5.9668 1.7738 -3.0776 34 1 3.2567 1.0986 -4.3125 35 1 4.8472 0.5883 -4.9292 36 1 5.4829 -1.8750 -6.3121 37 1 3.5019 -0.8445 -1.1279 38 1 2.4803 0.2794 -2.0556 39 1 2.1861 3.9824 -0.6120 40 1 1.1753 3.8951 -2.0746 41 1 0.4590 3.5737 -0.4771 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397831334.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:41 Heat of formation + Delta-G solvation = -36.560833 kcal Electronic energy + Delta-G solvation = -19274.220612 eV Core-core repulsion = 16575.528389 eV Total energy + Delta-G solvation = -2698.692222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.63366 -36.71854 -34.00416 -33.09819 -31.34039 -29.69643 -27.88368 -26.42504 -24.88474 -23.99463 -21.52170 -21.09431 -20.45281 -18.56550 -16.87873 -15.95507 -15.43467 -15.22996 -14.69725 -14.19954 -13.87246 -13.50944 -13.27235 -13.11858 -12.64904 -12.40553 -12.19365 -11.96082 -11.59659 -11.53827 -11.10091 -10.92960 -10.90873 -10.81467 -10.66158 -10.42296 -10.11761 -9.90851 -9.74791 -9.46179 -9.25971 -8.80289 -8.51829 -8.18851 -7.16935 -5.87572 -3.92849 3.35403 3.43243 3.47111 3.91155 4.50502 4.78262 5.01904 5.18581 5.27763 5.41040 5.42576 5.43784 5.51966 5.70097 5.73110 5.86421 5.90597 6.06187 6.07370 6.15380 6.18319 6.33368 6.41589 6.52848 6.60149 6.68753 6.69556 6.94630 7.03508 7.16089 7.38269 7.39820 7.58105 7.85768 7.90372 8.04862 8.23759 8.31503 8.61612 9.11947 9.70661 11.18369 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.008276 C = 0.006983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.648994 B = 3382.382039 C = 4008.835214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.157 4.157 3 C 0.059 3.941 4 H 0.051 0.949 5 C 0.033 3.967 6 N -0.527 5.527 7 C 0.048 3.952 8 C -0.118 4.118 9 C -0.106 4.106 10 C 0.052 3.948 11 H 0.028 0.972 12 C -0.508 4.508 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.285 1.285 20 C 0.058 3.942 21 O -0.364 6.364 22 C 0.030 3.970 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.113 0.887 27 H 0.068 0.932 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.053 0.947 34 H 0.030 0.970 35 H 0.086 0.914 36 H 0.257 0.743 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.037 0.963 40 H 0.082 0.918 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 8.175 10.137 14.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.194 4.194 3 C 0.000 4.000 4 H 0.069 0.931 5 C -0.096 4.096 6 N -0.251 5.251 7 C -0.079 4.079 8 C -0.155 4.155 9 C -0.144 4.144 10 C 0.033 3.967 11 H 0.047 0.953 12 C -0.547 4.547 13 H 0.071 0.929 14 C -0.139 4.139 15 N -0.528 5.528 16 Si 0.715 3.285 17 H -0.199 1.199 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.068 4.068 21 O -0.283 6.283 22 C -0.067 4.067 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.131 0.869 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.101 0.899 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.544 7.923 9.890 13.832 hybrid contribution -1.261 -0.279 -0.293 1.325 sum -6.805 7.644 9.597 14.030 Atomic orbital electron populations 1.21695 0.96130 1.01289 1.01204 1.22566 0.96213 0.95433 1.05200 1.22959 0.96262 0.94276 0.86537 0.93083 1.22687 0.91460 1.00975 0.94489 1.62193 1.53766 1.06658 1.02474 1.22379 1.00282 0.91355 0.93926 1.21674 0.99753 0.98891 0.95226 1.21584 0.98375 0.93395 1.01078 1.18696 0.95970 0.92743 0.89245 0.95337 1.21202 1.11281 1.15224 1.07000 0.92901 1.24935 0.94963 0.96797 0.97241 1.69916 1.22020 1.41344 1.19554 0.86620 0.79676 0.82747 0.79431 1.19872 1.21204 1.21169 1.22745 0.96847 0.90300 0.96897 1.88104 1.87741 1.21985 1.30424 1.22715 0.98296 0.83569 1.02117 0.92278 0.92909 0.94018 0.86875 0.91385 0.92124 0.90477 0.92088 0.93966 0.94052 0.92774 0.95144 0.89556 0.93283 0.92705 0.93029 0.94402 0.89934 0.94712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.81 37.16 0.36 -1.56 16 2 C -0.16 -2.30 4.74 -26.73 -0.13 -2.43 16 3 C 0.06 0.84 2.31 -26.73 -0.06 0.78 16 4 H 0.05 0.63 7.76 -51.93 -0.40 0.23 16 5 C 0.03 0.51 5.80 -3.83 -0.02 0.49 16 6 N -0.53 -10.08 4.86 -234.67 -1.14 -11.22 16 7 C 0.05 0.89 4.98 -3.83 -0.02 0.87 16 8 C -0.12 -2.44 6.09 -26.65 -0.16 -2.60 16 9 C -0.11 -2.62 5.02 -26.61 -0.13 -2.76 16 10 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 12 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 15 N -0.89 -25.96 11.35 55.43 0.63 -25.33 16 16 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.06 1.26 2.65 -3.83 -0.01 1.25 16 21 O -0.36 -5.73 5.56 -35.23 -0.20 -5.93 16 22 C 0.03 0.36 9.57 101.05 0.97 1.33 16 23 H 0.06 0.84 7.84 -51.93 -0.41 0.43 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.11 2.01 3.76 -51.93 -0.20 1.81 16 27 H 0.07 0.89 8.03 -51.93 -0.42 0.48 16 28 H 0.06 0.84 7.82 -51.93 -0.41 0.43 16 29 H 0.08 1.11 7.91 -51.93 -0.41 0.70 16 30 H 0.06 1.13 4.32 -51.93 -0.22 0.90 16 31 H 0.04 0.70 7.94 -51.93 -0.41 0.29 16 32 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 36 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.05 1.17 6.83 -51.93 -0.35 0.82 16 38 H 0.05 1.14 4.59 -51.93 -0.24 0.90 16 39 H 0.04 0.42 8.13 -51.93 -0.42 0.00 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 302.01 15.07 4.55 4.55 Total: -1.00 -29.28 302.01 -8.11 -37.39 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.13 Total: 0.23 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 0.20 Total: -16.35 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.51 Total: -36.55 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.20 Total: -5.93 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.28 -8.11 -37.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397831334.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.828 kcal (2) G-P(sol) polarization free energy of solvation -29.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds