Wall clock time and date at job start Sun Mar 29 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 H 1.08996 * 109.46914 * 304.07108 * 3 2 1 5 5 C 1.52999 * 109.47434 * 184.06498 * 3 2 1 6 6 N 1.46899 * 109.47030 * 180.66108 * 5 3 2 7 7 C 1.46852 * 110.99883 * 183.78012 * 6 5 3 8 8 C 1.53038 * 109.52006 * 185.84147 * 7 6 5 9 9 C 1.53124 * 109.27904 * 300.81964 * 8 7 6 10 10 C 1.53118 * 109.15959 * 57.65793 * 9 8 7 11 11 H 1.08997 * 109.50223 * 62.32454 * 10 9 8 12 12 C 1.50696 * 109.50339 * 182.40599 * 10 9 8 13 13 H 1.08001 * 120.00264 * 119.99614 * 12 10 9 14 14 C 1.37884 * 120.00078 * 300.00223 * 12 10 9 15 15 N 1.31511 * 120.00336 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 119.99737 * 359.72208 * 14 12 10 17 17 H 1.48504 * 109.47272 * 90.00134 * 16 14 12 18 18 H 1.48497 * 109.47223 * 210.00288 * 16 14 12 19 19 H 1.48508 * 109.47295 * 330.00221 * 16 14 12 20 20 C 1.46848 * 111.00414 * 307.99149 * 6 5 3 21 21 O 1.42903 * 109.46662 * 64.06534 * 3 2 1 22 22 C 1.42901 * 114.00200 * 258.48223 * 21 3 2 23 23 H 1.08997 * 109.47564 * 296.92963 * 1 2 3 24 24 H 1.09007 * 109.47064 * 56.92791 * 1 2 3 25 25 H 1.08997 * 109.47583 * 176.92676 * 1 2 3 26 26 H 1.09002 * 109.47359 * 240.00092 * 2 1 3 27 27 H 1.09003 * 109.46973 * 120.00189 * 2 1 3 28 28 H 1.09002 * 109.46874 * 60.66386 * 5 3 2 29 29 H 1.08999 * 109.47070 * 300.66173 * 5 3 2 30 30 H 1.09001 * 109.46222 * 65.82646 * 7 6 5 31 31 H 1.08995 * 109.45468 * 305.84865 * 7 6 5 32 32 H 1.09003 * 109.50016 * 180.88501 * 8 7 6 33 33 H 1.08990 * 109.50802 * 60.76343 * 8 7 6 34 34 H 1.09005 * 109.52156 * 297.75030 * 9 8 7 35 35 H 1.08997 * 109.57525 * 177.59709 * 9 8 7 36 36 H 0.97001 * 120.00188 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.45968 * 54.14393 * 20 6 5 38 38 H 1.09004 * 109.45964 * 294.18195 * 20 6 5 39 39 H 1.08999 * 109.47192 * 65.07279 * 22 21 3 40 40 H 1.09003 * 109.47393 * 185.07709 * 22 21 3 41 41 H 1.09005 * 109.46970 * 305.07679 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6184 1.9769 -0.8512 5 6 3.5666 1.4436 -0.1023 6 7 4.0573 2.8281 -0.0863 7 6 5.5133 2.8725 -0.2729 8 6 6.0065 4.3116 -0.1059 9 6 5.3134 5.2065 -1.1371 10 6 3.7968 5.1046 -0.9524 11 1 3.5256 5.4692 0.0383 12 6 3.1052 5.9365 -2.0015 13 1 2.4246 5.4701 -2.6984 14 6 3.3414 7.2932 -2.0717 15 7 2.7382 8.0191 -2.9875 16 14 4.5127 8.1011 -0.8615 17 1 5.8893 8.0843 -1.4184 18 1 4.0909 9.5055 -0.6268 19 1 4.4892 7.3560 0.4229 20 6 3.3676 3.6427 -1.0949 21 8 1.6433 2.0879 1.2117 22 6 0.5151 2.9530 1.0670 23 1 -0.3634 0.4654 0.9162 24 1 -0.3633 0.5608 -0.8612 25 1 -0.3634 -1.0261 -0.0551 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8688 0.9617 -1.0321 29 1 3.9878 0.8991 0.7428 30 1 5.7623 2.5170 -1.2728 31 1 5.9940 2.2354 0.4693 32 1 7.0850 4.3467 -0.2600 33 1 5.7702 4.6631 0.8983 34 1 5.5809 4.8792 -2.1419 35 1 5.6291 6.2400 -0.9947 36 1 2.9041 8.9736 -3.0367 37 1 2.2901 3.5647 -0.9497 38 1 3.6266 3.2834 -2.0909 39 1 -0.3626 2.3640 0.8009 40 1 0.3326 3.4726 2.0076 41 1 0.7149 3.6823 0.2818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397831335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:43 Heat of formation + Delta-G solvation = -51.406236 kcal Electronic energy + Delta-G solvation = -18776.545129 eV Core-core repulsion = 16077.209162 eV Total energy + Delta-G solvation = -2699.335967 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.13880 -37.48415 -34.01515 -33.02665 -31.94485 -30.29297 -28.52886 -25.85144 -25.05357 -24.09104 -22.07014 -21.10096 -20.44040 -18.83188 -16.70758 -16.56372 -15.88095 -15.29750 -14.63146 -14.31438 -14.04261 -13.81111 -13.48285 -13.17654 -13.03890 -12.70374 -12.39408 -12.22899 -12.12760 -12.02931 -11.42400 -11.11136 -11.06467 -11.03093 -10.87573 -10.47421 -10.43643 -10.01925 -9.84787 -9.58215 -9.14170 -9.05686 -8.89260 -8.48992 -7.70411 -6.05539 -4.04425 3.30439 3.41768 3.46155 4.05286 4.32404 4.44711 4.96507 5.07798 5.13551 5.26801 5.40968 5.48521 5.50505 5.55939 5.66858 5.69444 5.77027 5.83563 5.87844 5.90962 5.98704 6.02132 6.07586 6.14534 6.19402 6.29410 6.35088 6.36467 6.52356 6.65568 6.85548 6.88597 7.24145 7.45430 7.52551 7.69232 7.70517 7.91359 8.53809 8.97069 9.57810 11.07652 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.007388 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.087604 B = 3789.108300 C = 4354.431387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.087 3.913 4 H 0.068 0.932 5 C 0.056 3.944 6 N -0.533 5.533 7 C 0.064 3.936 8 C -0.119 4.119 9 C -0.122 4.122 10 C 0.021 3.979 11 H 0.036 0.964 12 C -0.514 4.514 13 H 0.071 0.929 14 C 0.071 3.929 15 N -0.903 5.903 16 Si 0.887 3.113 17 H -0.280 1.280 18 H -0.299 1.299 19 H -0.263 1.263 20 C 0.073 3.927 21 O -0.366 6.366 22 C 0.026 3.974 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.022 0.978 39 H 0.035 0.965 40 H 0.080 0.920 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -13.812 6.338 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.179 4.179 3 C 0.028 3.972 4 H 0.086 0.914 5 C -0.073 4.073 6 N -0.257 5.257 7 C -0.064 4.064 8 C -0.157 4.157 9 C -0.160 4.160 10 C 0.001 3.999 11 H 0.054 0.946 12 C -0.552 4.552 13 H 0.089 0.911 14 C -0.131 4.131 15 N -0.541 5.541 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.226 1.226 19 H -0.187 1.187 20 C -0.054 4.054 21 O -0.285 6.285 22 C -0.070 4.070 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.013 -13.464 6.899 15.128 hybrid contribution 0.685 0.306 -0.583 0.950 sum 0.672 -13.158 6.316 14.611 Atomic orbital electron populations 1.21820 0.95737 1.01433 1.02076 1.21967 0.96440 0.97107 1.02354 1.22268 0.94204 0.92278 0.88404 0.91425 1.22237 0.94027 0.90927 1.00070 1.61967 1.04133 1.08909 1.50738 1.21968 0.88314 0.97484 0.98606 1.21644 0.98330 0.94876 1.00840 1.22019 0.98847 0.97551 0.97566 1.19147 0.91121 0.91501 0.98093 0.94641 1.21004 1.26413 0.92372 1.15405 0.91109 1.24976 0.95698 0.97242 0.95145 1.69899 1.43368 1.06689 1.34188 0.86835 0.80829 0.77732 0.82826 1.20739 1.22647 1.18742 1.22186 0.97746 0.94722 0.90762 1.87913 1.48349 1.61103 1.31095 1.22909 0.88041 0.93366 1.02715 0.92105 0.92848 0.92881 0.91396 0.91250 0.94567 0.90718 0.95609 0.91924 0.92866 0.91772 0.92662 0.93596 0.92725 0.91503 0.95937 0.94617 0.90161 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.94 37.15 0.33 -1.28 16 2 C -0.14 -1.60 5.65 -26.74 -0.15 -1.75 16 3 C 0.09 1.25 1.76 -26.73 -0.05 1.20 16 4 H 0.07 1.04 5.74 -51.93 -0.30 0.74 16 5 C 0.06 0.83 4.82 -3.83 -0.02 0.81 16 6 N -0.53 -9.63 4.62 -234.67 -1.08 -10.71 16 7 C 0.06 1.07 5.46 -3.83 -0.02 1.05 16 8 C -0.12 -2.17 6.09 -26.65 -0.16 -2.33 16 9 C -0.12 -2.70 4.74 -26.61 -0.13 -2.83 16 10 C 0.02 0.49 1.85 -91.70 -0.17 0.32 16 11 H 0.04 0.91 7.20 -51.93 -0.37 0.53 16 12 C -0.51 -14.43 9.14 -34.44 -0.31 -14.74 16 13 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 14 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 15 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 16 Si 0.89 22.37 24.36 -169.99 -4.14 18.23 16 17 H -0.28 -6.89 6.88 56.52 0.39 -6.50 16 18 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C 0.07 1.50 4.26 -3.84 -0.02 1.48 16 21 O -0.37 -5.86 9.93 -35.23 -0.35 -6.21 16 22 C 0.03 0.38 10.39 101.05 1.05 1.43 16 23 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 24 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.91 8.12 -51.93 -0.42 0.49 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.07 3.36 -51.93 -0.17 0.90 16 36 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 37 H 0.07 1.37 4.39 -51.93 -0.23 1.14 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.04 0.44 6.01 -51.93 -0.31 0.12 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.83 6.63 -51.93 -0.34 0.49 16 LS Contribution 303.82 15.07 4.58 4.58 Total: -1.00 -30.39 303.82 -7.12 -37.51 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -7.16 Total: -1.78 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 0.26 Total: -14.68 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.31 Total: -37.66 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.35 Total: -6.21 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.23 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.39 -7.12 -37.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397831335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.892 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds