Wall clock time and date at job start Sun Mar 29 2020 23:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47575 * 2 1 4 4 H 1.08996 * 109.46914 * 304.07108 * 3 2 1 5 5 C 1.52999 * 109.47434 * 184.06498 * 3 2 1 6 6 N 1.46899 * 109.47030 * 180.66108 * 5 3 2 7 7 C 1.46852 * 110.99883 * 183.78012 * 6 5 3 8 8 C 1.53038 * 109.52006 * 185.84147 * 7 6 5 9 9 C 1.53124 * 109.27904 * 300.81964 * 8 7 6 10 10 C 1.53118 * 109.15959 * 57.65793 * 9 8 7 11 11 H 1.08997 * 109.50223 * 62.32454 * 10 9 8 12 12 C 1.50696 * 109.50339 * 182.40599 * 10 9 8 13 13 H 1.08001 * 120.00264 * 119.99614 * 12 10 9 14 14 C 1.37884 * 120.00078 * 300.00223 * 12 10 9 15 15 N 1.31511 * 120.00336 * 179.97438 * 14 12 10 16 16 Si 1.86800 * 119.99737 * 359.72208 * 14 12 10 17 17 H 1.48504 * 109.47272 * 90.00134 * 16 14 12 18 18 H 1.48497 * 109.47223 * 210.00288 * 16 14 12 19 19 H 1.48508 * 109.47295 * 330.00221 * 16 14 12 20 20 C 1.46848 * 111.00414 * 307.99149 * 6 5 3 21 21 O 1.42903 * 109.46662 * 64.06534 * 3 2 1 22 22 C 1.42901 * 114.00200 * 258.48223 * 21 3 2 23 23 H 1.08997 * 109.47564 * 296.92963 * 1 2 3 24 24 H 1.09007 * 109.47064 * 56.92791 * 1 2 3 25 25 H 1.08997 * 109.47583 * 176.92676 * 1 2 3 26 26 H 1.09002 * 109.47359 * 240.00092 * 2 1 3 27 27 H 1.09003 * 109.46973 * 120.00189 * 2 1 3 28 28 H 1.09002 * 109.46874 * 60.66386 * 5 3 2 29 29 H 1.08999 * 109.47070 * 300.66173 * 5 3 2 30 30 H 1.09001 * 109.46222 * 65.82646 * 7 6 5 31 31 H 1.08995 * 109.45468 * 305.84865 * 7 6 5 32 32 H 1.09003 * 109.50016 * 180.88501 * 8 7 6 33 33 H 1.08990 * 109.50802 * 60.76343 * 8 7 6 34 34 H 1.09005 * 109.52156 * 297.75030 * 9 8 7 35 35 H 1.08997 * 109.57525 * 177.59709 * 9 8 7 36 36 H 0.97001 * 120.00188 * 179.97438 * 15 14 12 37 37 H 1.09000 * 109.45968 * 54.14393 * 20 6 5 38 38 H 1.09004 * 109.45964 * 294.18195 * 20 6 5 39 39 H 1.08999 * 109.47192 * 65.07279 * 22 21 3 40 40 H 1.09003 * 109.47393 * 185.07709 * 22 21 3 41 41 H 1.09005 * 109.46970 * 305.07679 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6184 1.9769 -0.8512 5 6 3.5666 1.4436 -0.1023 6 7 4.0573 2.8281 -0.0863 7 6 5.5133 2.8725 -0.2729 8 6 6.0065 4.3116 -0.1059 9 6 5.3134 5.2065 -1.1371 10 6 3.7968 5.1046 -0.9524 11 1 3.5256 5.4692 0.0383 12 6 3.1052 5.9365 -2.0015 13 1 2.4246 5.4701 -2.6984 14 6 3.3414 7.2932 -2.0717 15 7 2.7382 8.0191 -2.9875 16 14 4.5127 8.1011 -0.8615 17 1 5.8893 8.0843 -1.4184 18 1 4.0909 9.5055 -0.6268 19 1 4.4892 7.3560 0.4229 20 6 3.3676 3.6427 -1.0949 21 8 1.6433 2.0879 1.2117 22 6 0.5151 2.9530 1.0670 23 1 -0.3634 0.4654 0.9162 24 1 -0.3633 0.5608 -0.8612 25 1 -0.3634 -1.0261 -0.0551 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8688 0.9617 -1.0321 29 1 3.9878 0.8991 0.7428 30 1 5.7623 2.5170 -1.2728 31 1 5.9940 2.2354 0.4693 32 1 7.0850 4.3467 -0.2600 33 1 5.7702 4.6631 0.8983 34 1 5.5809 4.8792 -2.1419 35 1 5.6291 6.2400 -0.9947 36 1 2.9041 8.9736 -3.0367 37 1 2.2901 3.5647 -0.9497 38 1 3.6266 3.2834 -2.0909 39 1 -0.3626 2.3640 0.8009 40 1 0.3326 3.4726 2.0076 41 1 0.7149 3.6823 0.2818 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397831335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:43 Heat of formation + Delta-G solvation = -72.385230 kcal Electronic energy + Delta-G solvation = -18777.454847 eV Core-core repulsion = 16077.209162 eV Total energy + Delta-G solvation = -2700.245685 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.48453 -38.83648 -35.66071 -34.41024 -33.52850 -32.04398 -29.71750 -27.09102 -26.97824 -25.42795 -23.31449 -22.75035 -21.62385 -20.47688 -18.82747 -17.75403 -17.34327 -16.60315 -16.19624 -15.73996 -15.52118 -15.17243 -14.93603 -14.80057 -14.44991 -14.18851 -13.76655 -13.71549 -13.42232 -13.08327 -12.95764 -12.75514 -12.44860 -12.33970 -12.12594 -11.96005 -11.79728 -11.75243 -11.58416 -11.27564 -10.96546 -10.80927 -10.57696 -10.26766 -9.10930 -8.31635 -6.34716 1.28336 1.35212 1.46459 2.31768 2.91127 3.03549 3.04641 3.84906 4.00396 4.07771 4.16133 4.17261 4.25212 4.41475 4.44464 4.49260 4.53601 4.58793 4.62808 4.69407 4.78954 4.81704 4.88501 4.90670 4.96780 5.01772 5.07119 5.09181 5.15681 5.22340 5.25973 5.40208 5.45378 5.62858 5.72399 6.17410 6.26647 6.35971 6.43649 6.72181 7.31104 8.85093 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026786 B = 0.007388 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.087604 B = 3789.108300 C = 4354.431387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.083 3.917 4 H 0.049 0.951 5 C 0.055 3.945 6 N -0.544 5.544 7 C 0.063 3.937 8 C -0.114 4.114 9 C -0.123 4.123 10 C 0.021 3.979 11 H 0.020 0.980 12 C -0.518 4.518 13 H 0.032 0.968 14 C 0.015 3.985 15 N -0.949 5.949 16 Si 0.949 3.051 17 H -0.266 1.266 18 H -0.298 1.298 19 H -0.251 1.251 20 C 0.087 3.913 21 O -0.383 6.383 22 C 0.028 3.972 23 H 0.054 0.946 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.051 0.949 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.059 0.941 38 H 0.012 0.988 39 H 0.056 0.944 40 H 0.089 0.911 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.586 -15.677 7.961 17.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.172 4.172 3 C 0.025 3.975 4 H 0.067 0.933 5 C -0.073 4.073 6 N -0.269 5.269 7 C -0.065 4.065 8 C -0.152 4.152 9 C -0.160 4.160 10 C 0.002 3.998 11 H 0.038 0.962 12 C -0.556 4.556 13 H 0.051 0.949 14 C -0.182 4.182 15 N -0.589 5.589 16 Si 0.777 3.223 17 H -0.192 1.192 18 H -0.226 1.226 19 H -0.176 1.176 20 C -0.041 4.041 21 O -0.301 6.301 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 1.557 -15.359 8.528 17.637 hybrid contribution 0.120 0.834 -1.140 1.418 sum 1.677 -14.526 7.388 16.383 Atomic orbital electron populations 1.21815 0.95209 1.02487 1.01516 1.21919 0.96901 0.94941 1.03400 1.22383 0.94099 0.93809 0.87214 0.93290 1.22360 0.94284 0.89168 1.01454 1.61927 1.05028 1.10562 1.49344 1.22068 0.87381 0.97019 1.00013 1.21622 0.99784 0.94819 0.98935 1.21927 0.97353 0.97959 0.98802 1.19046 0.92499 0.92885 0.95373 0.96196 1.21310 1.25752 0.93074 1.15488 0.94933 1.25801 0.97512 0.97918 0.96928 1.70039 1.45414 1.07138 1.36351 0.85827 0.79126 0.76501 0.80885 1.19207 1.22625 1.17555 1.21854 0.97730 0.93350 0.91142 1.87869 1.48930 1.61380 1.31952 1.22916 0.88516 0.93074 1.02285 0.92681 0.93418 0.91016 0.89940 0.90490 0.93129 0.89012 0.95071 0.88738 0.89800 0.92137 0.93258 0.94790 0.92557 0.92247 0.96962 0.92570 0.89237 0.95773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 8.94 71.98 0.64 -2.27 16 2 C -0.13 -2.72 5.65 30.59 0.17 -2.55 16 3 C 0.08 2.27 1.76 30.59 0.05 2.32 16 4 H 0.05 1.51 5.74 -2.39 -0.01 1.50 16 5 C 0.05 1.50 4.82 86.30 0.42 1.92 16 6 N -0.54 -18.60 4.62 -896.36 -4.14 -22.74 16 7 C 0.06 1.88 5.46 86.33 0.47 2.35 16 8 C -0.11 -3.79 6.09 30.65 0.19 -3.61 16 9 C -0.12 -5.27 4.74 30.68 0.15 -5.12 16 10 C 0.02 1.02 1.85 -11.49 -0.02 1.00 16 11 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 12 C -0.52 -30.15 9.14 25.60 0.23 -29.92 16 13 H 0.03 2.08 7.99 -2.91 -0.02 2.05 16 14 C 0.02 0.92 5.45 84.66 0.46 1.38 16 15 N -0.95 -60.12 13.96 21.45 0.30 -59.82 16 16 Si 0.95 46.48 24.36 68.60 1.67 48.15 16 17 H -0.27 -12.34 6.88 99.48 0.68 -11.65 16 18 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 19 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 20 C 0.09 3.59 4.26 86.32 0.37 3.96 16 21 O -0.38 -11.82 9.93 -148.98 -1.48 -13.30 16 22 C 0.03 0.81 10.39 113.37 1.18 1.99 16 23 H 0.05 1.10 6.43 -2.39 -0.02 1.09 16 24 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.03 1.52 3.36 -2.39 -0.01 1.52 16 36 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.06 2.52 4.39 -2.39 -0.01 2.51 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.06 1.34 6.01 -2.39 -0.01 1.33 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.02 0.80 6.63 -2.38 -0.02 0.79 16 Total: -1.00 -66.77 303.82 1.56 -65.21 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.90 Total: 11.03 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: 4.31 Total: -28.54 kcal Atomic # 7 Polarization: -78.72 SS G_CDS: -3.84 Total: -82.56 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: -1.48 Total: -13.30 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.67 Total: 48.15 kcal Total: -66.77 1.56 -65.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397831335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.174 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds