Wall clock time and date at job start Sun Mar 29 2020 23:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47021 * 2 1 4 4 H 1.09005 * 109.47028 * 55.00023 * 3 2 1 5 5 C 1.53003 * 109.47026 * 174.99732 * 3 2 1 6 6 N 1.46902 * 109.47166 * 184.99856 * 5 3 2 7 7 C 1.46853 * 110.99716 * 66.04706 * 6 5 3 8 8 C 1.53031 * 109.51935 * 185.83997 * 7 6 5 9 9 C 1.53124 * 109.27934 * 300.81871 * 8 7 6 10 10 C 1.53124 * 109.15825 * 57.65976 * 9 8 7 11 11 H 1.08999 * 109.50523 * 62.32283 * 10 9 8 12 12 C 1.50691 * 109.50213 * 182.40347 * 10 9 8 13 13 H 1.08007 * 119.99956 * 119.99821 * 12 10 9 14 14 C 1.37883 * 120.00363 * 299.99835 * 12 10 9 15 15 N 1.31508 * 119.99611 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00111 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47053 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46909 * 120.00071 * 16 14 12 19 19 H 1.48504 * 109.46765 * 239.99999 * 16 14 12 20 20 C 1.46846 * 111.00019 * 190.25541 * 6 5 3 21 21 O 1.42899 * 109.46972 * 294.99857 * 3 2 1 22 22 C 1.42905 * 113.99778 * 150.00330 * 21 3 2 23 23 H 1.09001 * 109.47149 * 300.00199 * 1 2 3 24 24 H 1.09001 * 109.47141 * 60.00119 * 1 2 3 25 25 H 1.08997 * 109.47402 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47149 * 239.99801 * 2 1 3 27 27 H 1.09000 * 109.46617 * 119.99903 * 2 1 3 28 28 H 1.08997 * 109.47333 * 304.99956 * 5 3 2 29 29 H 1.08996 * 109.46879 * 65.00031 * 5 3 2 30 30 H 1.09000 * 109.46034 * 305.85302 * 7 6 5 31 31 H 1.08997 * 109.45944 * 65.83558 * 7 6 5 32 32 H 1.08997 * 109.50897 * 60.76591 * 8 7 6 33 33 H 1.09005 * 109.50223 * 180.88253 * 8 7 6 34 34 H 1.08999 * 109.52404 * 177.56120 * 9 8 7 35 35 H 1.08999 * 109.52214 * 297.68887 * 9 8 7 36 36 H 0.96998 * 120.00153 * 180.02562 * 15 14 12 37 37 H 1.08997 * 109.46287 * 294.17778 * 20 6 5 38 38 H 1.09003 * 109.45572 * 54.14829 * 20 6 5 39 39 H 1.09001 * 109.47103 * 180.02562 * 22 21 3 40 40 H 1.09004 * 109.47054 * 299.99711 * 22 21 3 41 41 H 1.09000 * 109.47187 * 59.99767 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5648 1.4443 0.1258 6 7 4.0446 2.8276 0.2462 7 6 3.5896 3.4348 1.5035 8 6 3.9823 4.9137 1.5286 9 6 5.5035 5.0350 1.4026 10 6 5.9567 4.3525 0.1089 11 1 5.5117 4.8614 -0.7461 12 6 7.4588 4.4157 0.0063 13 1 8.0353 3.5039 -0.0459 14 6 8.0972 5.6375 -0.0210 15 7 7.3952 6.7477 0.0431 16 14 9.9592 5.7158 -0.1489 17 1 10.5098 4.3378 -0.2056 18 1 10.3401 6.4527 -1.3806 19 1 10.5078 6.4191 1.0384 20 6 5.5067 2.8899 0.1250 21 8 1.6620 2.0813 -1.2211 22 6 1.4559 3.4903 -1.1003 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8571 0.8801 1.0114 29 1 4.0029 0.9836 -0.7595 30 1 2.5058 3.3455 1.5785 31 1 4.0555 2.9211 2.3443 32 1 3.5058 5.4310 0.6959 33 1 3.6583 5.3603 2.4686 34 1 5.7841 6.0879 1.3765 35 1 5.9794 4.5523 2.2563 36 1 7.8443 7.6073 0.0235 37 1 5.9635 2.3787 0.9724 38 1 5.8153 2.4048 -0.8011 39 1 1.1715 3.9003 -2.0694 40 1 0.6618 3.6808 -0.3784 41 1 2.3769 3.9644 -0.7609 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397831337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:45 Heat of formation + Delta-G solvation = -61.136374 kcal Electronic energy + Delta-G solvation = -18570.952087 eV Core-core repulsion = 15871.194189 eV Total energy + Delta-G solvation = -2699.757898 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.04132 -37.19298 -33.92795 -33.22556 -31.62898 -29.92360 -28.10727 -25.92943 -24.95626 -23.75256 -21.73844 -21.54429 -20.31072 -18.63893 -16.54160 -16.39134 -15.40442 -15.26981 -14.47643 -14.21502 -14.05364 -13.77942 -13.39405 -13.09015 -12.97647 -12.51001 -12.35437 -12.06981 -11.94143 -11.45690 -11.14983 -11.07504 -10.96114 -10.94597 -10.75104 -10.62026 -10.38126 -10.01970 -9.83844 -9.54447 -9.35230 -8.88394 -8.69048 -8.29138 -7.58406 -5.96668 -4.02541 3.30497 3.38596 3.42392 4.09287 4.33812 4.51092 4.97898 5.10637 5.20433 5.33428 5.36832 5.56415 5.65060 5.66484 5.74080 5.79966 5.87935 5.88780 5.99385 6.03920 6.07951 6.14146 6.24430 6.32019 6.38545 6.47488 6.52478 6.68704 6.74948 6.97502 7.21535 7.40015 7.54818 7.66583 7.76429 7.83264 8.09600 8.18169 8.49502 9.01660 9.61791 11.09348 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042758 B = 0.005456 C = 0.005268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.685567 B = 5131.101743 C = 5314.291720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C 0.094 3.906 4 H 0.057 0.943 5 C 0.031 3.969 6 N -0.534 5.534 7 C 0.057 3.943 8 C -0.117 4.117 9 C -0.110 4.110 10 C 0.055 3.945 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.053 0.947 14 C 0.063 3.937 15 N -0.889 5.889 16 Si 0.890 3.110 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.069 3.931 21 O -0.378 6.378 22 C 0.026 3.974 23 H 0.049 0.951 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.091 0.909 35 H 0.029 0.971 36 H 0.259 0.741 37 H 0.018 0.982 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.024 0.976 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.659 -8.751 1.956 14.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C 0.036 3.964 4 H 0.075 0.925 5 C -0.097 4.097 6 N -0.258 5.258 7 C -0.071 4.071 8 C -0.155 4.155 9 C -0.148 4.148 10 C 0.036 3.964 11 H 0.052 0.948 12 C -0.552 4.552 13 H 0.072 0.928 14 C -0.138 4.138 15 N -0.528 5.528 16 Si 0.718 3.282 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.058 4.058 21 O -0.297 6.297 22 C -0.070 4.070 23 H 0.068 0.932 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.043 0.957 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.844 -8.388 1.398 14.581 hybrid contribution 1.441 -0.189 0.916 1.718 sum -10.403 -8.577 2.315 13.680 Atomic orbital electron populations 1.21699 0.95512 1.01210 1.02084 1.21594 0.96406 0.95425 1.02506 1.22155 0.93462 0.93160 0.87667 0.92465 1.22691 0.95484 0.90843 1.00727 1.62019 1.13759 1.15750 1.34303 1.22130 0.98209 0.96698 0.90081 1.21684 1.00084 0.93751 0.99953 1.21653 0.90301 1.04437 0.98447 1.18661 0.94782 0.88465 0.94463 0.94792 1.21193 0.91649 0.92242 1.50149 0.92834 1.24929 0.97974 0.95772 0.95151 1.69895 1.34832 0.97289 1.50740 0.86577 0.86065 0.78014 0.77570 1.19875 1.21030 1.21130 1.22308 0.83558 1.01168 0.98789 1.87791 1.89166 1.21036 1.31703 1.22944 1.01227 0.81824 1.01006 0.93221 0.91979 0.92990 0.91097 0.91108 0.94997 0.90399 0.92617 0.95886 0.92167 0.93586 0.89092 0.95212 0.93142 0.96397 0.92263 0.90879 0.95696 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 37.16 0.36 -1.12 16 2 C -0.12 -1.36 5.64 -26.73 -0.15 -1.51 16 3 C 0.09 1.30 2.19 -26.73 -0.06 1.24 16 4 H 0.06 0.78 5.87 -51.93 -0.31 0.47 16 5 C 0.03 0.49 4.63 -3.82 -0.02 0.47 16 6 N -0.53 -9.81 2.89 -234.67 -0.68 -10.49 16 7 C 0.06 0.98 4.61 -3.83 -0.02 0.97 16 8 C -0.12 -2.25 6.09 -26.65 -0.16 -2.41 16 9 C -0.11 -2.60 5.02 -26.60 -0.13 -2.73 16 10 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 11 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 12 C -0.51 -14.13 8.56 -34.44 -0.29 -14.42 16 13 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.33 11.35 55.43 0.63 -24.71 16 16 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 20 C 0.07 1.47 4.68 -3.84 -0.02 1.45 16 21 O -0.38 -5.89 9.88 -35.23 -0.35 -6.24 16 22 C 0.03 0.39 10.58 101.05 1.07 1.46 16 23 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.06 0.68 7.82 -51.93 -0.41 0.27 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.47 8.12 -51.93 -0.42 0.05 16 29 H 0.08 1.25 7.98 -51.93 -0.41 0.84 16 30 H 0.06 0.85 6.05 -51.93 -0.31 0.54 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 1.18 7.97 -51.93 -0.41 0.77 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 35 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 38 H 0.06 1.28 8.01 -51.93 -0.42 0.86 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.32 8.09 -51.93 -0.42 -0.10 16 41 H 0.08 1.32 5.53 -51.93 -0.29 1.03 16 LS Contribution 313.43 15.07 4.72 4.72 Total: -1.00 -28.19 313.43 -7.90 -36.09 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.49 Total: -1.87 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: 0.28 Total: -13.80 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: -0.05 Total: -35.19 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.35 Total: -6.24 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.19 -7.90 -36.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397831337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.043 kcal (2) G-P(sol) polarization free energy of solvation -28.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds