Wall clock time and date at job start Sun Mar 29 2020 23:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 H 1.08999 * 109.46577 * 305.16396 * 3 2 1 5 5 C 1.52998 * 109.47004 * 185.16297 * 3 2 1 6 6 N 1.46900 * 109.47246 * 179.97438 * 5 3 2 7 7 C 1.46844 * 110.99895 * 294.21798 * 6 5 3 8 8 C 1.53042 * 109.52386 * 174.15870 * 7 6 5 9 9 C 1.53125 * 109.27750 * 59.17070 * 8 7 6 10 10 C 1.53117 * 109.16434 * 302.34819 * 9 8 7 11 11 H 1.08997 * 109.50358 * 297.71582 * 10 9 8 12 12 C 1.50694 * 109.50176 * 177.59476 * 10 9 8 13 13 H 1.08001 * 120.00017 * 275.12796 * 12 10 9 14 14 C 1.37878 * 119.99936 * 95.13815 * 12 10 9 15 15 N 1.31512 * 119.99846 * 178.28691 * 14 12 10 16 16 Si 1.86799 * 119.99985 * 358.28087 * 14 12 10 17 17 H 1.48507 * 109.46861 * 84.68779 * 16 14 12 18 18 H 1.48501 * 109.47325 * 204.68566 * 16 14 12 19 19 H 1.48496 * 109.47199 * 324.69067 * 16 14 12 20 20 C 1.46843 * 111.00248 * 169.99950 * 6 5 3 21 21 O 1.42900 * 109.46896 * 65.16272 * 3 2 1 22 22 C 1.42898 * 113.99863 * 259.55612 * 21 3 2 23 23 H 1.09003 * 109.46797 * 293.91392 * 1 2 3 24 24 H 1.08998 * 109.46890 * 53.91236 * 1 2 3 25 25 H 1.08995 * 109.47193 * 173.91715 * 1 2 3 26 26 H 1.09000 * 109.47329 * 239.99534 * 2 1 3 27 27 H 1.09004 * 109.47222 * 119.99874 * 2 1 3 28 28 H 1.09000 * 109.47304 * 300.00012 * 5 3 2 29 29 H 1.09000 * 109.47269 * 59.99860 * 5 3 2 30 30 H 1.09007 * 109.46169 * 294.16803 * 7 6 5 31 31 H 1.08997 * 109.46868 * 54.13851 * 7 6 5 32 32 H 1.09000 * 109.50151 * 299.23662 * 8 7 6 33 33 H 1.08995 * 109.50512 * 179.11727 * 8 7 6 34 34 H 1.09001 * 109.52114 * 182.44016 * 9 8 7 35 35 H 1.09000 * 109.57057 * 62.28540 * 9 8 7 36 36 H 0.96998 * 120.00086 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.46351 * 305.85916 * 20 6 5 38 38 H 1.08997 * 109.46030 * 65.84008 * 20 6 5 39 39 H 1.09003 * 109.46776 * 184.02706 * 22 21 3 40 40 H 1.08989 * 109.47452 * 304.03265 * 22 21 3 41 41 H 1.08998 * 109.47139 * 64.03606 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6032 1.9823 -0.8401 5 6 3.5646 1.4443 -0.1298 6 7 4.0543 2.8293 -0.1304 7 6 3.5956 3.5491 -1.3253 8 6 3.9997 5.0216 -1.2220 9 6 5.5227 5.1203 -1.0968 10 6 5.9791 4.3223 0.1277 11 1 5.5433 4.7559 1.0278 12 6 7.4823 4.3654 0.2245 13 1 8.0797 3.6584 -0.3320 14 6 8.0950 5.3072 1.0237 15 7 9.4053 5.3234 1.1346 16 14 7.0638 6.5603 1.9488 17 1 6.6014 5.9710 3.2311 18 1 7.8828 7.7677 2.2258 19 1 5.8875 6.9383 1.1251 20 6 5.5176 2.8701 -0.0148 21 8 1.6654 2.0802 1.2227 22 6 0.5201 2.9273 1.1091 23 1 -0.3633 0.4166 0.9395 24 1 -0.3633 0.6053 -0.8305 25 1 -0.3633 -1.0218 -0.1089 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 4.0015 0.9045 0.7103 29 1 3.8504 0.9579 -1.0624 30 1 4.0518 3.1088 -2.2120 31 1 2.5108 3.4746 -1.4002 32 1 3.5328 5.4662 -0.3431 33 1 3.6729 5.5523 -2.1162 34 1 5.8115 6.1647 -0.9794 35 1 5.9899 4.7116 -1.9928 36 1 9.8364 5.9861 1.6965 37 1 5.8287 2.3025 0.8622 38 1 5.9647 2.4332 -0.9077 39 1 0.3433 3.4287 2.0607 40 1 0.6946 3.6721 0.3328 41 1 -0.3513 2.3270 0.8474 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397831338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:47 Heat of formation + Delta-G solvation = -81.426256 kcal Electronic energy + Delta-G solvation = -18496.453025 eV Core-core repulsion = 15795.815291 eV Total energy + Delta-G solvation = -2700.637733 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.33878 -38.84763 -35.54608 -34.38692 -33.51904 -31.98943 -29.75000 -27.16081 -26.82870 -25.12233 -23.34909 -22.77436 -21.56799 -20.42519 -18.97191 -17.72385 -17.08362 -16.60534 -16.04923 -15.62930 -15.51249 -15.08047 -14.96874 -14.66308 -14.50566 -14.15724 -13.76700 -13.63279 -13.30472 -12.96342 -12.93348 -12.78439 -12.55141 -12.34626 -12.08189 -11.89038 -11.81800 -11.75374 -11.47989 -11.29735 -11.10078 -10.75733 -10.62610 -10.23259 -9.10580 -8.29038 -6.32307 1.35994 1.36531 1.48960 2.36264 2.94649 2.99795 3.12814 3.89097 4.04024 4.08647 4.18062 4.22472 4.31694 4.42756 4.47115 4.52538 4.56755 4.63649 4.64036 4.74095 4.82597 4.87114 4.87787 4.92465 4.99726 5.03849 5.08395 5.12510 5.20535 5.25185 5.25944 5.42581 5.56337 5.66407 5.76048 6.17319 6.29585 6.38838 6.52038 6.75679 7.34194 8.88055 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.034301 B = 0.005968 C = 0.005845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.111455 B = 4690.323975 C = 4789.207235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C 0.098 3.902 4 H 0.070 0.930 5 C 0.050 3.950 6 N -0.543 5.543 7 C 0.061 3.939 8 C -0.113 4.113 9 C -0.111 4.111 10 C 0.020 3.980 11 H 0.029 0.971 12 C -0.515 4.515 13 H 0.030 0.970 14 C 0.015 3.985 15 N -0.951 5.951 16 Si 0.942 3.058 17 H -0.272 1.272 18 H -0.288 1.288 19 H -0.245 1.245 20 C 0.086 3.914 21 O -0.393 6.393 22 C 0.027 3.973 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.039 0.961 35 H 0.043 0.957 36 H 0.265 0.735 37 H 0.052 0.948 38 H 0.015 0.985 39 H 0.082 0.918 40 H 0.040 0.960 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.181 -6.746 -4.315 22.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.178 4.178 3 C 0.040 3.960 4 H 0.088 0.912 5 C -0.078 4.078 6 N -0.267 5.267 7 C -0.067 4.067 8 C -0.150 4.150 9 C -0.149 4.149 10 C 0.001 3.999 11 H 0.047 0.953 12 C -0.553 4.553 13 H 0.048 0.952 14 C -0.182 4.182 15 N -0.592 5.592 16 Si 0.767 3.233 17 H -0.197 1.197 18 H -0.214 1.214 19 H -0.169 1.169 20 C -0.042 4.042 21 O -0.312 6.312 22 C -0.069 4.069 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.132 -6.454 -3.662 22.397 hybrid contribution 0.821 0.232 -0.299 0.904 sum -20.311 -6.222 -3.961 21.609 Atomic orbital electron populations 1.21794 0.94506 1.02470 1.01841 1.21968 0.97356 0.95558 1.02958 1.22242 0.92906 0.93614 0.87264 0.91201 1.22360 0.95404 0.89191 1.00839 1.61892 1.10499 1.14464 1.39838 1.22116 1.00163 0.94179 0.90218 1.21619 0.95351 0.96112 1.01943 1.21752 0.95193 0.99314 0.98675 1.19064 0.92969 0.92900 0.94962 0.95299 1.21265 0.91584 1.15788 1.26678 0.95180 1.25877 0.95763 0.99407 0.97182 1.70049 1.10580 1.37272 1.41263 0.85813 0.79455 0.78466 0.79571 1.19744 1.21387 1.16861 1.21886 0.85890 0.97920 0.98487 1.87937 1.47985 1.62869 1.32374 1.22951 0.87906 0.93477 1.02552 0.92780 0.92207 0.91548 0.89974 0.91848 0.91411 0.93023 0.95237 0.89448 0.92363 0.89928 0.94192 0.93771 0.92581 0.92982 0.96698 0.89921 0.94121 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.81 71.98 0.63 -1.56 16 2 C -0.14 -2.55 5.64 30.60 0.17 -2.38 16 3 C 0.10 2.26 2.15 30.59 0.07 2.32 16 4 H 0.07 1.44 5.92 -2.39 -0.01 1.43 16 5 C 0.05 1.41 4.65 86.30 0.40 1.81 16 6 N -0.54 -18.74 4.52 -896.36 -4.05 -22.79 16 7 C 0.06 1.80 5.29 86.33 0.46 2.26 16 8 C -0.11 -3.64 6.09 30.65 0.19 -3.46 16 9 C -0.11 -4.65 5.21 30.68 0.16 -4.49 16 10 C 0.02 0.98 1.86 -11.49 -0.02 0.96 16 11 H 0.03 1.44 5.61 -2.39 -0.01 1.42 16 12 C -0.51 -30.07 8.87 25.60 0.23 -29.84 16 13 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 14 C 0.01 0.87 5.47 84.66 0.46 1.33 16 15 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 16 Si 0.94 46.06 26.51 68.60 1.82 47.88 16 17 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.25 -11.16 6.52 99.48 0.65 -10.51 16 20 C 0.09 3.64 4.73 86.33 0.41 4.05 16 21 O -0.39 -10.68 10.01 -148.98 -1.49 -12.17 16 22 C 0.03 0.56 10.47 113.37 1.19 1.74 16 23 H 0.05 0.86 6.60 -2.39 -0.02 0.85 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.07 2.06 7.99 -2.39 -0.02 2.04 16 29 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.03 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.09 2.11 6.21 -2.39 -0.01 2.10 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.04 1.74 7.29 -2.39 -0.02 1.72 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 37 H 0.05 2.32 8.02 -2.39 -0.02 2.30 16 38 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 0.80 8.03 -2.39 -0.02 0.79 16 41 H 0.06 0.90 5.95 -2.39 -0.01 0.88 16 Total: -1.00 -67.54 312.48 1.82 -65.72 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.91 Total: 8.96 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: 4.34 Total: -27.26 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -3.76 Total: -83.13 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.49 Total: -12.17 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 1.82 Total: 47.88 kcal Total: -67.54 1.82 -65.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397831338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.707 kcal (2) G-P(sol) polarization free energy of solvation -67.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds