Wall clock time and date at job start Sun Mar 29 2020 22:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47072 * 2 1 4 4 H 1.08999 * 109.50356 * 305.08957 * 3 2 1 5 5 C 1.53093 * 109.50586 * 185.00015 * 3 2 1 6 6 N 1.47011 * 109.25903 * 183.21713 * 5 3 2 7 7 C 1.46906 * 111.00222 * 182.39475 * 6 5 3 8 8 C 1.52999 * 109.46897 * 170.00216 * 7 6 5 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.47012 * 110.75217 * 58.61910 * 6 5 3 18 18 C 1.53100 * 109.25496 * 301.38193 * 17 6 5 19 19 H 1.08996 * 109.51195 * 296.91382 * 18 17 6 20 20 C 1.53006 * 109.54219 * 176.80474 * 18 17 6 21 21 C 1.52998 * 109.47310 * 175.19931 * 20 18 17 22 22 O 1.43011 * 109.50172 * 65.21794 * 3 2 1 23 23 H 1.09003 * 109.46933 * 59.99559 * 1 2 3 24 24 H 1.08996 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46585 * 299.99774 * 1 2 3 26 26 H 1.09001 * 109.47110 * 240.00784 * 2 1 3 27 27 H 1.09000 * 109.47517 * 119.99990 * 2 1 3 28 28 H 1.09002 * 109.51002 * 63.28165 * 5 3 2 29 29 H 1.09000 * 109.51263 * 303.15639 * 5 3 2 30 30 H 1.09000 * 109.47033 * 49.99963 * 7 6 5 31 31 H 1.09001 * 109.46544 * 290.00019 * 7 6 5 32 32 H 1.09000 * 109.47486 * 60.00024 * 8 7 6 33 33 H 1.09001 * 109.47362 * 299.99301 * 8 7 6 34 34 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.51099 * 61.31605 * 17 6 5 36 36 H 1.09004 * 109.51133 * 181.45431 * 17 6 5 37 37 H 1.09003 * 109.46906 * 295.19817 * 20 18 17 38 38 H 1.08997 * 109.46599 * 55.19476 * 20 18 17 39 39 H 1.09003 * 109.47044 * 299.99802 * 21 20 18 40 40 H 1.08994 * 109.47179 * 59.99604 * 21 20 18 41 41 H 1.08999 * 109.47380 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4453 -0.1258 6 7 4.0563 2.8290 -0.0477 7 6 5.5141 2.8815 -0.2213 8 6 5.9563 4.3372 -0.3837 9 6 7.4519 4.3909 -0.5611 10 1 8.0297 3.4786 -0.5539 11 6 8.0830 5.6054 -0.7275 12 7 7.3800 6.7169 -0.7309 13 14 9.9367 5.6720 -0.9482 14 1 10.4901 4.2947 -0.9065 15 1 10.2573 6.2953 -2.2574 16 1 10.5366 6.4793 0.1445 17 6 3.6540 3.4535 1.2210 18 6 2.1273 3.4306 1.3332 19 1 1.6944 4.0291 0.5318 20 6 1.7049 4.0066 2.6863 21 6 0.1788 4.0941 2.7494 22 8 1.6664 2.0810 1.2239 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 3.8529 1.0109 -1.0834 29 1 3.9990 0.8593 0.6848 30 1 5.7948 2.3152 -1.1094 31 1 5.9999 2.4496 0.6537 32 1 5.6755 4.9034 0.5044 33 1 5.4705 4.7691 -1.2587 34 1 7.8241 7.5713 -0.8476 35 1 4.0885 2.8996 2.0532 36 1 4.0053 4.4850 1.2465 37 1 2.0650 3.3586 3.4854 38 1 2.1313 5.0026 2.8062 39 1 -0.1813 4.7421 1.9503 40 1 -0.2475 3.0982 2.6294 41 1 -0.1221 4.5049 3.7131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398474308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:08 Heat of formation + Delta-G solvation = -70.065438 kcal Electronic energy + Delta-G solvation = -18115.240929 eV Core-core repulsion = 15415.095838 eV Total energy + Delta-G solvation = -2700.145091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.61110 -35.84989 -34.92004 -32.96734 -32.44589 -29.98675 -29.05140 -26.69379 -24.19451 -23.99515 -21.94796 -21.05718 -20.30458 -19.78960 -16.60171 -16.47369 -15.67175 -14.97461 -14.72757 -14.56999 -14.20108 -13.84963 -13.48114 -13.39746 -13.32751 -12.70425 -12.28552 -12.07212 -11.95637 -11.69574 -11.40713 -11.24559 -11.06562 -11.01105 -10.91552 -10.75161 -10.71060 -10.51425 -10.10218 -9.88655 -9.55567 -9.14657 -9.05362 -8.34667 -7.78841 -6.00958 -4.03379 3.30372 3.37805 3.41818 3.83021 4.25918 4.49124 4.81608 5.03701 5.12578 5.14641 5.22260 5.34131 5.35305 5.41105 5.51402 5.52315 5.64904 5.73135 5.84074 5.89955 5.91426 5.97755 6.03326 6.04222 6.12055 6.20635 6.28623 6.30083 6.39482 6.42622 6.47176 6.93382 7.41817 7.43841 7.52881 7.76517 7.86763 8.05641 8.41818 9.03814 9.60442 11.10487 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.005128 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.939918 B = 5458.936061 C = 6167.555539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.063 0.937 5 C 0.023 3.977 6 N -0.538 5.538 7 C 0.063 3.937 8 C 0.028 3.972 9 C -0.522 4.522 10 H 0.054 0.946 11 C 0.059 3.941 12 N -0.893 5.893 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.025 3.975 18 C 0.095 3.905 19 H 0.064 0.936 20 C -0.115 4.115 21 C -0.146 4.146 22 O -0.379 6.379 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.016 0.984 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.471 -9.607 3.988 17.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.037 3.963 4 H 0.081 0.919 5 C -0.106 4.106 6 N -0.262 5.262 7 C -0.063 4.063 8 C -0.009 4.009 9 C -0.561 4.561 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.532 5.532 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.104 4.104 18 C 0.037 3.963 19 H 0.082 0.918 20 C -0.153 4.153 21 C -0.203 4.203 22 O -0.299 6.299 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.038 0.962 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.761 -9.247 3.726 16.993 hybrid contribution 1.737 -0.180 0.289 1.770 sum -12.024 -9.426 4.014 15.797 Atomic orbital electron populations 1.21690 0.95315 1.01125 1.02275 1.21514 0.96591 0.94635 1.02497 1.22144 0.93264 0.93448 0.87428 0.91868 1.22769 0.95460 0.91041 1.01331 1.62322 1.15375 1.15372 1.33154 1.22360 0.83129 1.01963 0.98875 1.19098 0.95390 0.88788 0.97659 1.21224 0.92525 0.92636 1.49680 0.92753 1.24989 0.98209 0.95728 0.95342 1.69980 1.35338 0.97638 1.50261 0.86541 0.85707 0.78054 0.77728 1.19777 1.20950 1.21020 1.22803 0.95100 1.01779 0.90673 1.22206 0.93103 0.83289 0.97699 0.91784 1.21515 0.96789 1.01014 0.95995 1.21684 0.95525 1.02041 1.01065 1.87891 1.76850 1.26475 1.38700 0.92937 0.93073 0.92007 0.90725 0.91404 0.90278 0.94769 0.91999 0.96162 0.96530 0.95695 0.93038 0.94760 0.88741 0.91424 0.90354 0.92929 0.92186 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.81 37.16 0.36 -1.09 16 2 C -0.11 -1.26 5.64 -26.73 -0.15 -1.42 16 3 C 0.10 1.32 2.80 -26.68 -0.07 1.25 16 4 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 5 C 0.02 0.36 4.93 -3.72 -0.02 0.34 16 6 N -0.54 -10.19 4.73 -234.31 -1.11 -11.30 16 7 C 0.06 1.37 4.90 -3.82 -0.02 1.35 16 8 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 9 C -0.52 -14.89 9.11 -34.44 -0.31 -15.20 16 10 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 14 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 15 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.02 0.44 4.72 -3.71 -0.02 0.42 16 18 C 0.09 1.43 2.80 -26.68 -0.07 1.35 16 19 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 20 C -0.12 -1.46 5.65 -26.73 -0.15 -1.61 16 21 C -0.15 -1.61 9.81 37.16 0.36 -1.24 16 22 O -0.38 -5.66 9.20 -35.23 -0.32 -5.98 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.67 7.83 -51.93 -0.41 0.26 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.06 1.32 8.04 -51.93 -0.42 0.90 16 31 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 32 H 0.02 0.45 6.52 -51.93 -0.34 0.12 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.09 1.83 6.38 -51.93 -0.33 1.50 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.69 7.82 -51.93 -0.41 0.28 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 323.31 15.07 4.87 4.87 Total: -1.00 -30.05 323.31 -8.95 -39.00 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: -7.78 Total: -3.46 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: -0.32 Total: -13.65 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: -0.37 Total: -37.46 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.32 Total: -5.98 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.05 -8.95 -39.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.064 kcal (2) G-P(sol) polarization free energy of solvation -30.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds