Wall clock time and date at job start Sun Mar 29 2020 22:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.47072 * 2 1 4 4 H 1.08999 * 109.50356 * 305.08957 * 3 2 1 5 5 C 1.53093 * 109.50586 * 185.00015 * 3 2 1 6 6 N 1.47011 * 109.25903 * 183.21713 * 5 3 2 7 7 C 1.46906 * 111.00222 * 182.39475 * 6 5 3 8 8 C 1.52999 * 109.46897 * 170.00216 * 7 6 5 9 9 C 1.50706 * 109.46573 * 179.97438 * 8 7 6 10 10 H 1.07995 * 120.00167 * 359.72054 * 9 8 7 11 11 C 1.37879 * 119.99394 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99424 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47487 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47233 * 120.00158 * 13 11 9 16 16 H 1.48508 * 109.46883 * 239.99963 * 13 11 9 17 17 C 1.47012 * 110.75217 * 58.61910 * 6 5 3 18 18 C 1.53100 * 109.25496 * 301.38193 * 17 6 5 19 19 H 1.08996 * 109.51195 * 296.91382 * 18 17 6 20 20 C 1.53006 * 109.54219 * 176.80474 * 18 17 6 21 21 C 1.52998 * 109.47310 * 175.19931 * 20 18 17 22 22 O 1.43011 * 109.50172 * 65.21794 * 3 2 1 23 23 H 1.09003 * 109.46933 * 59.99559 * 1 2 3 24 24 H 1.08996 * 109.46911 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46585 * 299.99774 * 1 2 3 26 26 H 1.09001 * 109.47110 * 240.00784 * 2 1 3 27 27 H 1.09000 * 109.47517 * 119.99990 * 2 1 3 28 28 H 1.09002 * 109.51002 * 63.28165 * 5 3 2 29 29 H 1.09000 * 109.51263 * 303.15639 * 5 3 2 30 30 H 1.09000 * 109.47033 * 49.99963 * 7 6 5 31 31 H 1.09001 * 109.46544 * 290.00019 * 7 6 5 32 32 H 1.09000 * 109.47486 * 60.00024 * 8 7 6 33 33 H 1.09001 * 109.47362 * 299.99301 * 8 7 6 34 34 H 0.96996 * 119.99730 * 179.97438 * 12 11 9 35 35 H 1.09002 * 109.51099 * 61.31605 * 17 6 5 36 36 H 1.09004 * 109.51133 * 181.45431 * 17 6 5 37 37 H 1.09003 * 109.46906 * 295.19817 * 20 18 17 38 38 H 1.08997 * 109.46599 * 55.19476 * 20 18 17 39 39 H 1.09003 * 109.47044 * 299.99802 * 21 20 18 40 40 H 1.08994 * 109.47179 * 59.99604 * 21 20 18 41 41 H 1.08999 * 109.47380 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4453 -0.1258 6 7 4.0563 2.8290 -0.0477 7 6 5.5141 2.8815 -0.2213 8 6 5.9563 4.3372 -0.3837 9 6 7.4519 4.3909 -0.5611 10 1 8.0297 3.4786 -0.5539 11 6 8.0830 5.6054 -0.7275 12 7 7.3800 6.7169 -0.7309 13 14 9.9367 5.6720 -0.9482 14 1 10.4901 4.2947 -0.9065 15 1 10.2573 6.2953 -2.2574 16 1 10.5366 6.4793 0.1445 17 6 3.6540 3.4535 1.2210 18 6 2.1273 3.4306 1.3332 19 1 1.6944 4.0291 0.5318 20 6 1.7049 4.0066 2.6863 21 6 0.1788 4.0941 2.7494 22 8 1.6664 2.0810 1.2239 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3632 0.5138 0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8900 28 1 3.8529 1.0109 -1.0834 29 1 3.9990 0.8593 0.6848 30 1 5.7948 2.3152 -1.1094 31 1 5.9999 2.4496 0.6537 32 1 5.6755 4.9034 0.5044 33 1 5.4705 4.7691 -1.2587 34 1 7.8241 7.5713 -0.8476 35 1 4.0885 2.8996 2.0532 36 1 4.0053 4.4850 1.2465 37 1 2.0650 3.3586 3.4854 38 1 2.1313 5.0026 2.8062 39 1 -0.1813 4.7421 1.9503 40 1 -0.2475 3.0982 2.6294 41 1 -0.1221 4.5049 3.7131 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398474308.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:08 Heat of formation + Delta-G solvation = -88.514560 kcal Electronic energy + Delta-G solvation = -18116.040943 eV Core-core repulsion = 15415.095838 eV Total energy + Delta-G solvation = -2700.945105 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89766 -37.39080 -35.96198 -35.06160 -33.42529 -31.87283 -30.21177 -28.24745 -25.92923 -25.19871 -23.36027 -22.09968 -21.69283 -21.36280 -18.63158 -17.71010 -17.07478 -16.61584 -16.39177 -15.76439 -15.70125 -15.02426 -14.76265 -14.55164 -14.41326 -14.24425 -14.17481 -13.32796 -13.19097 -12.99221 -12.86011 -12.69557 -12.58468 -12.49076 -12.14533 -11.97745 -11.88265 -11.78304 -11.72723 -11.43161 -11.30843 -11.14281 -10.57127 -10.44991 -9.33071 -8.22094 -6.33723 1.39453 1.39723 1.53110 2.38462 2.68574 2.88697 3.11435 3.68769 3.92635 3.94856 4.06761 4.11634 4.29546 4.31231 4.39252 4.40116 4.47037 4.49937 4.59708 4.73747 4.76882 4.79907 4.91013 4.93289 5.01515 5.06478 5.11217 5.12807 5.19718 5.32432 5.41515 5.44851 5.47835 5.59605 5.73581 5.99940 6.12265 6.25406 6.29116 6.82732 7.35609 8.90302 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.031002 B = 0.005128 C = 0.004539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.939918 B = 5458.936061 C = 6167.555539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.095 3.905 4 H 0.060 0.940 5 C 0.023 3.977 6 N -0.550 5.550 7 C 0.079 3.921 8 C 0.037 3.963 9 C -0.546 4.546 10 H 0.059 0.941 11 C 0.003 3.997 12 N -0.931 5.931 13 Si 0.967 3.033 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.027 3.973 18 C 0.102 3.898 19 H 0.057 0.943 20 C -0.113 4.113 21 C -0.140 4.140 22 O -0.380 6.380 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.067 0.933 31 H 0.018 0.982 32 H -0.006 1.006 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.030 0.970 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.618 -10.969 4.076 17.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.037 3.963 4 H 0.078 0.922 5 C -0.105 4.105 6 N -0.275 5.275 7 C -0.048 4.048 8 C 0.000 4.000 9 C -0.584 4.584 10 H 0.078 0.922 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.791 3.209 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.101 4.101 18 C 0.044 3.956 19 H 0.075 0.925 20 C -0.151 4.151 21 C -0.197 4.197 22 O -0.299 6.299 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.086 0.914 28 H 0.109 0.891 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.036 0.964 32 H 0.012 0.988 33 H 0.012 0.988 34 H 0.073 0.927 35 H 0.049 0.951 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.926 -10.628 3.817 17.929 hybrid contribution 1.748 0.251 0.250 1.784 sum -12.177 -10.378 4.067 16.508 Atomic orbital electron populations 1.21662 0.94316 1.02224 1.01869 1.21527 0.97387 0.92391 1.03382 1.22290 0.91824 0.95272 0.86946 0.92245 1.22896 0.96790 0.88862 1.01996 1.62247 1.13431 1.17845 1.33953 1.22008 0.85164 0.98640 0.98975 1.18911 0.94624 0.91399 0.95079 1.21629 0.93679 0.93136 1.49955 0.92240 1.25951 1.03674 0.95202 0.94671 1.70111 1.37683 0.98367 1.50894 0.85373 0.79047 0.78568 0.77888 1.18618 1.20225 1.20303 1.22783 0.97208 1.00098 0.90037 1.22158 0.90841 0.83687 0.98963 0.92485 1.21530 0.98234 1.00916 0.94439 1.21636 0.93839 1.02052 1.02166 1.87910 1.76589 1.26155 1.39284 0.92689 0.91238 0.93079 0.88937 0.91408 0.89055 0.94749 0.91444 0.96380 0.98755 0.98845 0.92694 0.95135 0.91238 0.91279 0.90157 0.92778 0.92474 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.81 71.98 0.71 -1.80 16 2 C -0.11 -2.15 5.64 30.60 0.17 -1.98 16 3 C 0.09 2.50 2.80 30.63 0.09 2.59 16 4 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 5 C 0.02 0.69 4.93 86.31 0.43 1.11 16 6 N -0.55 -21.10 4.73 -895.21 -4.23 -25.33 16 7 C 0.08 3.50 4.90 86.30 0.42 3.92 16 8 C 0.04 2.04 4.91 29.85 0.15 2.18 16 9 C -0.55 -31.59 9.11 25.60 0.23 -31.36 16 10 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 13 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 14 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.03 0.99 4.72 86.32 0.41 1.40 16 18 C 0.10 3.05 2.80 30.63 0.09 3.14 16 19 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 20 C -0.11 -2.80 5.65 30.60 0.17 -2.63 16 21 C -0.14 -2.87 9.81 71.98 0.71 -2.16 16 22 O -0.38 -10.94 9.20 -148.98 -1.37 -12.31 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.05 1.00 7.83 -2.39 -0.02 0.98 16 26 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.09 2.55 8.09 -2.39 -0.02 2.53 16 29 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 2.87 8.04 -2.39 -0.02 2.85 16 31 H 0.02 0.80 8.12 -2.39 -0.02 0.78 16 32 H -0.01 -0.34 6.52 -2.39 -0.02 -0.36 16 33 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 34 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 2.85 6.38 -2.39 -0.02 2.83 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 1.21 7.82 -2.39 -0.02 1.19 16 41 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -64.69 323.31 1.69 -63.00 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: 0.95 Total: 9.90 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 4.03 Total: -24.95 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.95 Total: -82.18 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -1.37 Total: -12.31 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -64.69 1.69 -63.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398474308.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.510 kcal (2) G-P(sol) polarization free energy of solvation -64.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds