Wall clock time and date at job start Sun Mar 29 2020 23:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47448 * 2 1 4 4 H 1.08998 * 109.46862 * 305.00378 * 3 2 1 5 5 O 1.42905 * 109.46980 * 64.99505 * 3 2 1 6 6 C 1.52997 * 109.47482 * 184.99813 * 3 2 1 7 7 N 1.46899 * 109.47254 * 179.97438 * 6 3 2 8 8 C 1.46843 * 111.00049 * 294.21280 * 7 6 3 9 9 C 1.53043 * 109.52446 * 174.16274 * 8 7 6 10 10 C 1.53115 * 109.28035 * 59.17281 * 9 8 7 11 11 C 1.53000 * 109.52526 * 182.44087 * 10 9 8 12 12 C 1.50692 * 109.47272 * 294.68990 * 11 10 9 13 13 H 1.07999 * 120.00281 * 359.97438 * 12 11 10 14 14 C 1.37879 * 120.00007 * 179.97438 * 12 11 10 15 15 N 1.31509 * 120.00054 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99880 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47097 * 59.99965 * 16 14 12 18 18 H 1.48500 * 109.46883 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47112 * 299.99594 * 16 14 12 20 20 C 1.53119 * 109.16391 * 302.35079 * 10 9 8 21 21 C 1.46842 * 111.00041 * 169.99637 * 7 6 3 22 22 H 1.09007 * 109.46964 * 60.00529 * 1 2 3 23 23 H 1.09004 * 109.47224 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47346 * 300.00002 * 1 2 3 25 25 H 1.09001 * 109.47166 * 239.99233 * 2 1 3 26 26 H 1.09004 * 109.46717 * 120.00185 * 2 1 3 27 27 H 0.96696 * 114.00036 * 60.00352 * 5 3 2 28 28 H 1.09002 * 109.47153 * 59.99783 * 6 3 2 29 29 H 1.09001 * 109.46832 * 299.99974 * 6 3 2 30 30 H 1.09004 * 109.46019 * 294.17499 * 8 7 6 31 31 H 1.08999 * 109.46883 * 54.14319 * 8 7 6 32 32 H 1.09007 * 109.49669 * 299.23395 * 9 8 7 33 33 H 1.09001 * 109.53519 * 179.13897 * 9 8 7 34 34 H 1.09007 * 109.57302 * 62.28363 * 10 9 8 35 35 H 1.09008 * 109.46746 * 54.68639 * 11 10 9 36 36 H 1.09002 * 109.47114 * 174.68297 * 11 10 9 37 37 H 0.96997 * 119.99851 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.50021 * 297.71564 * 20 10 9 39 39 H 1.09003 * 109.53874 * 177.61210 * 20 10 9 40 40 H 1.08998 * 109.46877 * 305.85973 * 21 7 6 41 41 H 1.09002 * 109.46171 * 65.83843 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4442 -0.1257 7 7 4.0545 2.8292 -0.1263 8 6 3.5991 3.5478 -1.3232 9 6 4.0029 5.0204 -1.2201 10 6 5.5254 5.1193 -1.0909 11 6 5.9304 6.5856 -0.9264 12 6 5.5943 7.3438 -2.1846 13 1 5.1379 6.8311 -3.0184 14 6 5.8696 8.6920 -2.2713 15 7 6.4249 9.3164 -1.2558 16 14 5.4536 9.6317 -3.8312 17 1 3.9930 9.5466 -4.0858 18 1 5.8455 11.0551 -3.6710 19 1 6.1910 9.0407 -4.9767 20 6 5.9785 4.3226 0.1356 21 6 5.5174 2.8702 -0.0067 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 2.0140 1.6542 2.0139 28 1 3.8532 0.9569 -1.0570 29 1 3.9994 0.9052 0.7162 30 1 4.0577 3.1066 -2.2081 31 1 2.5145 3.4733 -1.4010 32 1 3.5335 5.4659 -0.3430 33 1 3.6784 5.5508 -2.1154 34 1 5.9952 4.7098 -1.9852 35 1 5.3898 7.0196 -0.0852 36 1 7.0026 6.6476 -0.7401 37 1 6.6182 10.2650 -1.3167 38 1 5.5402 4.7571 1.0341 39 1 7.0656 4.3537 0.2093 40 1 5.8262 2.3035 0.8717 41 1 5.9671 2.4324 -0.8979 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399341865.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:19 Heat of formation + Delta-G solvation = -78.887814 kcal Electronic energy + Delta-G solvation = -17952.726652 eV Core-core repulsion = 15252.198994 eV Total energy + Delta-G solvation = -2700.527658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14630 -37.38541 -34.26092 -32.89344 -32.16447 -30.36170 -28.99766 -26.84928 -24.18150 -22.85460 -22.45414 -21.18228 -20.48740 -18.85486 -16.41908 -16.21407 -16.05238 -15.32835 -14.96406 -14.46833 -14.41957 -13.63173 -13.49790 -13.26441 -12.88336 -12.62034 -12.26439 -12.04116 -11.86700 -11.70598 -11.57645 -11.17622 -11.05059 -10.85029 -10.74915 -10.60047 -10.52183 -10.24122 -9.94499 -9.79679 -9.46537 -8.97959 -8.83169 -8.28032 -7.99696 -5.93035 -3.94397 3.36784 3.41202 3.43471 3.94867 4.50817 4.51158 4.62007 4.87196 4.92939 5.13164 5.30083 5.35256 5.42199 5.47658 5.53839 5.59681 5.63676 5.70629 5.71834 5.79206 5.93022 5.99817 6.05256 6.09984 6.19603 6.30894 6.50160 6.64897 6.73308 7.04371 7.17037 7.26310 7.38152 7.44305 7.74485 7.75172 7.92835 8.08110 8.51277 9.11997 9.68735 11.18372 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037760 B = 0.004612 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.342466 B = 6069.218403 C = 6457.352969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.097 0.903 5 O -0.544 6.544 6 C 0.022 3.978 7 N -0.526 5.526 8 C 0.055 3.945 9 C -0.099 4.099 10 C -0.081 4.081 11 C 0.028 3.972 12 C -0.515 4.515 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.111 4.111 21 C 0.060 3.940 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.368 0.632 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.017 0.983 36 H 0.013 0.987 37 H 0.260 0.740 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -18.583 3.130 20.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.115 0.885 5 O -0.348 6.348 6 C -0.106 4.106 7 N -0.250 5.250 8 C -0.073 4.073 9 C -0.136 4.136 10 C -0.100 4.100 11 C -0.009 4.009 12 C -0.553 4.553 13 H 0.072 0.928 14 C -0.145 4.145 15 N -0.536 5.536 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.149 4.149 21 C -0.068 4.068 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.215 0.785 28 H 0.053 0.947 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -7.739 -17.760 3.177 19.632 hybrid contribution 0.551 -0.278 -1.282 1.423 sum -7.188 -18.038 1.895 19.510 Atomic orbital electron populations 1.21688 0.95075 1.01192 1.02558 1.22231 0.97200 0.97530 1.02456 1.21972 0.92570 0.91930 0.88553 0.88511 1.86631 1.76055 1.57143 1.14991 1.22822 0.96360 0.90804 1.00663 1.61867 1.10790 1.12146 1.40224 1.22242 0.99350 0.96236 0.89425 1.21528 0.96876 0.92579 1.02646 1.21233 0.94556 0.98774 0.95435 1.19110 0.96330 0.88443 0.96977 1.21225 1.39884 0.93694 1.00487 0.92796 1.25014 0.95425 0.97869 0.96158 1.69954 1.43257 1.09907 1.30504 0.86714 0.78816 0.78897 0.83898 1.20278 1.21366 1.20382 1.21683 0.99661 0.93260 1.00308 1.22109 0.86854 0.98553 0.99290 0.92753 0.93066 0.91955 0.91376 0.91749 0.78535 0.94678 0.90992 0.95807 0.91490 0.91736 0.91030 0.93194 0.96475 0.96832 0.93061 0.91547 0.92244 0.91862 0.95673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.81 37.16 0.36 -0.85 16 2 C -0.16 -1.28 5.61 -26.74 -0.15 -1.43 16 3 C 0.11 1.18 2.84 -26.74 -0.08 1.10 16 4 H 0.10 1.16 6.43 -51.93 -0.33 0.83 16 5 O -0.54 -6.61 12.74 -35.23 -0.45 -7.06 16 6 C 0.02 0.26 4.62 -3.83 -0.02 0.24 16 7 N -0.53 -7.83 4.52 -234.67 -1.06 -8.90 16 8 C 0.05 0.89 5.29 -3.83 -0.02 0.87 16 9 C -0.10 -1.94 5.15 -26.65 -0.14 -2.07 16 10 C -0.08 -1.71 2.20 -90.50 -0.20 -1.91 16 11 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 12 C -0.51 -14.62 8.44 -34.44 -0.29 -14.91 16 13 H 0.05 1.48 7.08 -52.49 -0.37 1.11 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 16 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 C -0.11 -2.00 5.38 -26.65 -0.14 -2.14 16 21 C 0.06 0.90 5.46 -3.84 -0.02 0.88 16 22 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.37 3.24 9.05 45.56 0.41 3.65 16 28 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.07 0.73 7.99 -51.93 -0.41 0.32 16 30 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 1.02 6.21 -51.93 -0.32 0.70 16 32 H 0.06 1.35 8.14 -51.92 -0.42 0.92 16 33 H 0.07 1.49 7.05 -51.93 -0.37 1.12 16 34 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.02 0.48 8.14 -51.92 -0.42 0.05 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 319.91 15.07 4.82 4.82 Total: -1.00 -31.03 319.91 -8.74 -39.77 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.85 Total: -0.84 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -0.91 Total: -18.09 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.33 Total: -35.53 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.45 Total: -7.06 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.03 -8.74 -39.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399341865.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.117 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds