Wall clock time and date at job start Sun Mar 29 2020 22:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47387 * 2 1 4 4 O 1.42900 * 109.46993 * 119.99914 * 2 1 3 5 5 C 1.52997 * 109.47293 * 240.00131 * 2 1 3 6 6 N 1.46900 * 109.46839 * 306.98451 * 5 2 1 7 7 C 1.46850 * 111.00167 * 168.26024 * 6 5 2 8 8 C 1.53034 * 109.52658 * 185.84098 * 7 6 5 9 9 C 1.53128 * 109.27870 * 300.82372 * 8 7 6 10 10 C 1.52992 * 109.57585 * 177.59039 * 9 8 7 11 11 C 1.50705 * 109.47425 * 65.28395 * 10 9 8 12 12 H 1.08006 * 119.99374 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00162 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00318 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99818 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47465 * 59.99744 * 15 13 11 17 17 H 1.48507 * 109.47187 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47259 * 299.99900 * 15 13 11 19 19 C 1.53123 * 109.16060 * 57.65065 * 9 8 7 20 20 C 1.46844 * 111.00133 * 292.47225 * 6 5 2 21 21 H 1.09002 * 109.47401 * 305.55017 * 1 2 3 22 22 H 1.09006 * 109.46893 * 65.54439 * 1 2 3 23 23 H 1.08994 * 109.47229 * 185.54059 * 1 2 3 24 24 H 1.08995 * 109.47387 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46899 * 300.00012 * 3 2 1 26 26 H 1.08998 * 109.46871 * 59.99391 * 3 2 1 27 27 H 0.96698 * 113.99904 * 299.99781 * 4 2 1 28 28 H 1.08997 * 109.47534 * 66.98750 * 5 2 1 29 29 H 1.08999 * 109.47400 * 186.98995 * 5 2 1 30 30 H 1.08995 * 109.46517 * 305.86135 * 7 6 5 31 31 H 1.09003 * 109.45790 * 65.82638 * 7 6 5 32 32 H 1.08997 * 109.50551 * 180.88235 * 8 7 6 33 33 H 1.08999 * 109.50369 * 60.75847 * 8 7 6 34 34 H 1.09002 * 109.52053 * 297.74912 * 9 8 7 35 35 H 1.08994 * 109.47621 * 185.28411 * 10 9 8 36 36 H 1.09004 * 109.47508 * 305.28560 * 10 9 8 37 37 H 0.97000 * 120.00276 * 179.97438 * 14 13 11 38 38 H 1.08995 * 109.49931 * 182.40329 * 19 9 8 39 39 H 1.08999 * 109.49867 * 62.28716 * 19 9 8 40 40 H 1.09000 * 109.46382 * 294.17382 * 20 6 5 41 41 H 1.09001 * 109.46259 * 54.15887 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0400 -0.7212 -1.2492 6 7 1.4176 -2.0490 -1.3364 7 6 1.6602 -2.6587 -2.6501 8 6 0.8793 -3.9705 -2.7572 9 6 1.3291 -4.9191 -1.6425 10 6 0.5103 -6.2099 -1.7065 11 6 0.8199 -6.9383 -2.9889 12 1 1.5295 -6.5218 -3.6886 13 6 0.1966 -8.1357 -3.2695 14 7 -0.6685 -8.6420 -2.4182 15 14 0.5810 -9.0388 -4.8588 16 1 2.0282 -9.3686 -4.9033 17 1 -0.2148 -10.2911 -4.9215 18 1 0.2346 -8.1744 -6.0156 19 6 1.1108 -4.2411 -0.2871 20 6 1.8850 -2.9215 -0.2516 21 1 -0.3634 0.5975 0.8361 22 1 -0.3633 0.4255 -0.9355 23 1 -0.3633 -1.0228 0.0992 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6766 1.9563 0.8899 27 1 1.7209 -0.2701 1.9979 28 1 1.7824 -0.1403 -2.1348 29 1 3.1228 -0.8308 -1.1889 30 1 1.3322 -1.9758 -3.4336 31 1 2.7253 -2.8596 -2.7661 32 1 1.0720 -4.4306 -3.7264 33 1 -0.1869 -3.7686 -2.6550 34 1 2.3867 -5.1520 -1.7671 35 1 0.7653 -6.8444 -0.8577 36 1 -0.5521 -5.9683 -1.6733 37 1 -1.1073 -9.4842 -2.6157 38 1 1.4687 -4.8946 0.5084 39 1 0.0481 -4.0435 -0.1461 40 1 2.9489 -3.1211 -0.3789 41 1 1.7198 -2.4295 0.7069 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399370338.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:44 Heat of formation + Delta-G solvation = -71.652868 kcal Electronic energy + Delta-G solvation = -18307.444563 eV Core-core repulsion = 15607.230636 eV Total energy + Delta-G solvation = -2700.213927 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.33801 -37.43745 -34.26112 -32.62370 -31.63236 -30.18244 -28.08900 -27.35573 -25.39451 -23.30201 -22.38436 -20.69552 -20.02329 -18.77491 -16.73663 -16.17965 -15.64691 -15.43523 -14.49832 -14.44597 -13.85597 -13.59255 -13.28483 -13.06525 -12.89129 -12.62732 -12.15299 -12.08046 -11.95587 -11.65135 -11.45864 -11.26347 -11.02031 -10.91624 -10.65272 -10.51683 -10.49729 -10.18408 -10.03680 -9.64701 -9.41966 -8.94448 -8.69895 -8.26468 -7.92466 -5.91474 -3.92698 3.37448 3.41772 3.44198 4.08705 4.20575 4.52290 4.71032 4.92830 5.02036 5.36128 5.43575 5.46013 5.49797 5.55259 5.65549 5.72087 5.74566 5.87027 5.91280 5.94782 6.00540 6.10507 6.18959 6.31564 6.40992 6.58530 6.64924 6.72350 6.81737 7.10306 7.21968 7.30937 7.48971 7.54669 7.64528 7.77925 7.96062 8.10205 8.53636 9.13827 9.70290 11.19880 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.052873 B = 0.004735 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 529.443882 B = 5911.892899 C = 6126.106970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 C -0.176 4.176 4 O -0.551 6.551 5 C 0.068 3.932 6 N -0.530 5.530 7 C 0.054 3.946 8 C -0.098 4.098 9 C -0.082 4.082 10 C 0.028 3.972 11 C -0.513 4.513 12 H 0.054 0.946 13 C 0.056 3.944 14 N -0.897 5.897 15 Si 0.888 3.112 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.111 4.111 20 C 0.047 3.953 21 H 0.045 0.955 22 H 0.061 0.939 23 H 0.080 0.920 24 H 0.060 0.940 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.367 0.633 28 H 0.080 0.920 29 H 0.034 0.966 30 H 0.062 0.938 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.049 0.951 35 H 0.013 0.987 36 H 0.016 0.984 37 H 0.259 0.741 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.018 0.982 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 18.990 5.043 20.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.088 3.912 3 C -0.234 4.234 4 O -0.358 6.358 5 C -0.060 4.060 6 N -0.255 5.255 7 C -0.074 4.074 8 C -0.135 4.135 9 C -0.101 4.101 10 C -0.009 4.009 11 C -0.552 4.552 12 H 0.072 0.928 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.716 3.284 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.149 4.149 20 C -0.080 4.080 21 H 0.064 0.936 22 H 0.080 0.920 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.077 0.923 27 H 0.215 0.785 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.037 0.963 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.688 18.501 4.658 19.432 hybrid contribution 0.818 -0.296 -0.666 1.095 sum 4.506 18.205 3.992 19.175 Atomic orbital electron populations 1.22299 0.94869 1.03719 1.01305 1.21246 0.93642 0.90272 0.85996 1.22467 1.01921 0.96615 1.02445 1.86636 1.77422 1.55993 1.15741 1.22053 0.96730 0.91496 0.95752 1.61967 1.58025 1.01956 1.03506 1.22204 0.98030 0.97158 0.89966 1.21517 0.99557 0.92440 1.00017 1.21239 0.99739 0.96647 0.92455 1.19111 0.94851 0.90275 0.96631 1.21240 1.24010 1.05299 1.04632 0.92826 1.25012 0.95311 0.97513 0.96639 1.69958 1.28133 1.19788 1.35787 0.86722 0.78266 0.79131 0.84235 1.20380 1.21383 1.20323 1.21695 1.00270 0.94548 0.98405 1.22531 0.95941 0.93793 0.95731 0.93626 0.92040 0.90147 0.92096 0.91649 0.92299 0.78489 0.90176 0.94746 0.91960 0.95737 0.91125 0.91984 0.93282 0.96846 0.96584 0.93096 0.92520 0.92003 0.96321 0.87856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.47 37.16 0.31 -1.40 16 2 C 0.13 1.35 1.09 -90.62 -0.10 1.25 16 3 C -0.18 -1.42 8.81 37.16 0.33 -1.10 16 4 O -0.55 -6.04 9.68 -35.23 -0.34 -6.38 16 5 C 0.07 0.85 4.33 -3.83 -0.02 0.84 16 6 N -0.53 -8.10 3.70 -234.68 -0.87 -8.97 16 7 C 0.05 0.88 5.46 -3.83 -0.02 0.86 16 8 C -0.10 -1.92 5.15 -26.65 -0.14 -2.05 16 9 C -0.08 -1.77 2.20 -90.49 -0.20 -1.97 16 10 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 11 C -0.51 -14.69 8.45 -34.44 -0.29 -14.98 16 12 H 0.05 1.49 7.08 -52.48 -0.37 1.12 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 15 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 C -0.11 -2.09 5.38 -26.65 -0.14 -2.23 16 20 C 0.05 0.77 5.08 -3.83 -0.02 0.75 16 21 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.08 1.04 7.63 -51.93 -0.40 0.64 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.37 2.62 9.05 45.56 0.41 3.03 16 28 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 29 H 0.03 0.46 8.11 -51.93 -0.42 0.04 16 30 H 0.06 0.90 8.00 -51.93 -0.42 0.49 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.46 7.05 -51.93 -0.37 1.10 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.10 1.61 4.87 -51.93 -0.25 1.36 16 LS Contribution 315.74 15.07 4.76 4.76 Total: -1.00 -31.02 315.74 -8.10 -39.11 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -6.86 Total: -0.91 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -0.51 Total: -17.88 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.13 Total: -35.71 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.34 Total: -6.38 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.02 -8.10 -39.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399370338.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.540 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds