Wall clock time and date at job start Sun Mar 29 2020 22:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47360 * 2 1 4 4 H 1.08999 * 109.50986 * 305.09467 * 3 2 1 5 5 C 1.53092 * 109.50976 * 185.00074 * 3 2 1 6 6 N 1.47011 * 109.26279 * 183.21579 * 5 3 2 7 7 C 1.46897 * 111.00286 * 182.39045 * 6 5 3 8 8 C 1.53008 * 109.46773 * 67.29283 * 7 6 5 9 9 C 1.50695 * 109.46687 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00792 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00337 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99600 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47296 * 90.00479 * 13 11 9 15 15 H 1.48499 * 109.46997 * 210.00233 * 13 11 9 16 16 H 1.48498 * 109.47135 * 329.99752 * 13 11 9 17 17 C 1.47020 * 110.74560 * 58.61665 * 6 5 3 18 18 H 1.08998 * 109.50794 * 61.32659 * 17 6 5 19 19 C 1.53000 * 109.49967 * 181.44824 * 17 6 5 20 20 C 1.53007 * 109.46974 * 183.75745 * 19 17 6 21 21 C 1.53091 * 109.26069 * 301.38350 * 17 6 5 22 22 O 1.43010 * 109.25972 * 56.85103 * 21 17 6 23 23 H 1.09001 * 109.46974 * 299.99959 * 1 2 3 24 24 H 1.09005 * 109.47259 * 59.99403 * 1 2 3 25 25 H 1.08994 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46679 * 240.00438 * 2 1 3 27 27 H 1.08995 * 109.47225 * 120.00680 * 2 1 3 28 28 H 1.09009 * 109.50513 * 63.27942 * 5 3 2 29 29 H 1.09001 * 109.50908 * 303.15848 * 5 3 2 30 30 H 1.09002 * 109.47485 * 187.29415 * 7 6 5 31 31 H 1.08995 * 109.47114 * 307.29650 * 7 6 5 32 32 H 1.08992 * 109.46914 * 299.99816 * 8 7 6 33 33 H 1.08998 * 109.46543 * 60.00060 * 8 7 6 34 34 H 0.97001 * 120.00097 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47711 * 303.75948 * 19 17 6 36 36 H 1.08999 * 109.47166 * 63.76409 * 19 17 6 37 37 H 1.08997 * 109.47152 * 293.77884 * 20 19 17 38 38 H 1.09002 * 109.46589 * 53.77542 * 20 19 17 39 39 H 1.08997 * 109.47472 * 173.77048 * 20 19 17 40 40 H 1.09003 * 109.50802 * 296.91398 * 21 17 6 41 41 H 1.09002 * 109.54129 * 176.80845 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9826 -0.8406 5 6 3.5658 1.4453 -0.1258 6 7 4.0564 2.8289 -0.0477 7 6 5.5141 2.8813 -0.2213 8 6 5.8721 2.4770 -1.6529 9 6 7.3675 2.5313 -1.8311 10 1 7.9995 2.8244 -1.0058 11 6 7.9290 2.2068 -3.0478 12 7 9.2341 2.2537 -3.2032 13 14 6.8360 1.6991 -4.4751 14 1 6.4495 2.9022 -5.2550 15 1 7.5746 0.7563 -5.3532 16 1 5.6153 1.0349 -3.9519 17 6 3.6540 3.4533 1.2210 18 1 4.0886 2.8995 2.0532 19 6 4.1474 4.9011 1.2568 20 6 3.8104 5.5214 2.6143 21 6 2.1274 3.4304 1.3333 22 8 1.6665 2.0811 1.2240 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8529 1.0108 -1.0834 29 1 3.9990 0.8592 0.6848 30 1 5.8665 3.8951 -0.0311 31 1 5.9883 2.1944 0.4796 32 1 5.5198 1.4632 -1.8429 33 1 5.3978 3.1639 -2.3537 34 1 9.6292 2.0250 -4.0592 35 1 5.2267 4.9211 1.1060 36 1 3.6594 5.4709 0.4659 37 1 2.7285 5.6026 2.7181 38 1 4.2054 4.8900 3.4102 39 1 4.2575 6.5131 2.6817 40 1 1.6944 4.0290 0.5318 41 1 1.8265 3.8409 2.2973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403914722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:30 Heat of formation + Delta-G solvation = -61.652555 kcal Electronic energy + Delta-G solvation = -18361.261664 eV Core-core repulsion = 15661.481383 eV Total energy + Delta-G solvation = -2699.780281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.79366 -36.36260 -34.58975 -33.21341 -32.54984 -30.23018 -28.73393 -26.86057 -24.76105 -23.89179 -22.13448 -20.95765 -20.31615 -19.61174 -16.94685 -16.58458 -15.91471 -15.04837 -14.72236 -14.51124 -14.30102 -13.95880 -13.53997 -13.40942 -13.06885 -12.86311 -12.78003 -12.55611 -12.11754 -11.73304 -11.46406 -11.37113 -11.09553 -10.97583 -10.90888 -10.84131 -10.60716 -10.20878 -10.15742 -9.83884 -9.63893 -9.23543 -9.17262 -8.53737 -7.90878 -6.05362 -4.03526 3.31444 3.38419 3.42642 3.84497 4.13887 4.45047 4.82652 4.93610 5.01344 5.10401 5.18302 5.28302 5.29251 5.39013 5.43577 5.49473 5.58501 5.61447 5.73438 5.82572 5.91132 5.93746 5.95500 6.01127 6.08073 6.17177 6.22208 6.23100 6.30989 6.33343 6.43422 6.78706 7.12222 7.25065 7.31201 7.55905 7.58389 7.83080 8.52018 8.98610 9.57125 11.08006 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.007139 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.152740 B = 3921.213907 C = 5099.308464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.093 3.907 4 H 0.065 0.935 5 C 0.024 3.976 6 N -0.537 5.537 7 C 0.066 3.934 8 C -0.006 4.006 9 C -0.521 4.521 10 H 0.070 0.930 11 C 0.068 3.932 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.266 1.266 17 C 0.048 3.952 18 H 0.043 0.957 19 C -0.121 4.121 20 C -0.151 4.151 21 C 0.071 3.929 22 O -0.385 6.385 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.014 0.986 33 H 0.020 0.980 34 H 0.263 0.737 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 0.562 8.665 18.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.082 0.918 5 C -0.105 4.105 6 N -0.262 5.262 7 C -0.061 4.061 8 C -0.044 4.044 9 C -0.560 4.560 10 H 0.088 0.912 11 C -0.133 4.133 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.060 4.060 18 H 0.061 0.939 19 C -0.159 4.159 20 C -0.209 4.209 21 C -0.006 4.006 22 O -0.304 6.304 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.032 0.968 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.416 0.703 8.295 18.406 hybrid contribution 0.280 -0.579 -0.390 0.752 sum -16.136 0.124 7.905 17.969 Atomic orbital electron populations 1.21692 0.95308 1.01238 1.02152 1.21528 0.96557 0.94538 1.02823 1.22235 0.93547 0.93660 0.87051 0.91751 1.22804 0.94788 0.90330 1.02533 1.62340 1.15297 1.16508 1.32021 1.22248 0.83374 1.00939 0.99493 1.19554 0.96945 0.96102 0.91759 1.21075 0.90162 1.46137 0.98590 0.91156 1.24993 0.94840 0.94893 0.98604 1.69914 1.10042 1.49344 1.24961 0.86754 0.81046 0.78873 0.82459 1.20240 1.21472 1.19027 1.22292 0.96064 0.95944 0.91749 0.93862 1.21620 1.02423 0.94264 0.97585 1.21802 1.01185 1.00668 0.97204 1.22698 0.92643 0.83549 1.01683 1.87915 1.76770 1.26518 1.39163 0.92106 0.92942 0.92953 0.90442 0.91278 0.89107 0.94427 0.90711 0.95591 0.96761 0.96195 0.92724 0.90649 0.91061 0.92835 0.92830 0.92520 0.92645 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.81 37.16 0.36 -1.16 16 2 C -0.12 -1.39 5.64 -26.73 -0.15 -1.54 16 3 C 0.09 1.32 2.80 -26.68 -0.07 1.24 16 4 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 5 C 0.02 0.39 4.73 -3.72 -0.02 0.38 16 6 N -0.54 -9.47 4.53 -226.34 -1.03 -10.49 16 7 C 0.07 1.35 4.69 -3.82 -0.02 1.33 16 8 C -0.01 -0.14 4.00 -27.88 -0.11 -0.25 16 9 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 10 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 13 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 14 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 15 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 16 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 17 C 0.05 0.72 2.07 -67.60 -0.14 0.58 16 18 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 19 C -0.12 -1.62 5.26 -26.73 -0.14 -1.76 16 20 C -0.15 -1.58 9.49 37.16 0.35 -1.23 16 21 C 0.07 0.94 5.94 37.20 0.22 1.16 16 22 O -0.38 -5.60 10.02 -35.23 -0.35 -5.95 16 23 H 0.06 0.66 7.83 -51.93 -0.41 0.26 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.09 1.60 6.42 -51.92 -0.33 1.26 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.51 5.64 -51.93 -0.29 1.22 16 31 H 0.03 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.01 0.35 5.60 -51.93 -0.29 0.05 16 33 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 34 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 35 H 0.08 1.12 5.95 -51.93 -0.31 0.81 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.05 0.49 6.93 -51.93 -0.36 0.13 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.02 6.85 -51.93 -0.36 0.67 16 LS Contribution 313.07 15.07 4.72 4.72 Total: -1.00 -30.55 313.07 -8.10 -38.65 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.40 Total: -2.38 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -0.15 Total: -14.62 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.25 Total: -37.70 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.35 Total: -5.95 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.55 -8.10 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403914722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.001 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds