Wall clock time and date at job start Sun Mar 29 2020 22:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47360 * 2 1 4 4 H 1.08999 * 109.50986 * 305.09467 * 3 2 1 5 5 C 1.53092 * 109.50976 * 185.00074 * 3 2 1 6 6 N 1.47011 * 109.26279 * 183.21579 * 5 3 2 7 7 C 1.46897 * 111.00286 * 182.39045 * 6 5 3 8 8 C 1.53008 * 109.46773 * 67.29283 * 7 6 5 9 9 C 1.50695 * 109.46687 * 179.97438 * 8 7 6 10 10 H 1.07997 * 120.00792 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99909 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00337 * 180.02562 * 11 9 8 13 13 Si 1.86806 * 119.99600 * 359.97438 * 11 9 8 14 14 H 1.48497 * 109.47296 * 90.00479 * 13 11 9 15 15 H 1.48499 * 109.46997 * 210.00233 * 13 11 9 16 16 H 1.48498 * 109.47135 * 329.99752 * 13 11 9 17 17 C 1.47020 * 110.74560 * 58.61665 * 6 5 3 18 18 H 1.08998 * 109.50794 * 61.32659 * 17 6 5 19 19 C 1.53000 * 109.49967 * 181.44824 * 17 6 5 20 20 C 1.53007 * 109.46974 * 183.75745 * 19 17 6 21 21 C 1.53091 * 109.26069 * 301.38350 * 17 6 5 22 22 O 1.43010 * 109.25972 * 56.85103 * 21 17 6 23 23 H 1.09001 * 109.46974 * 299.99959 * 1 2 3 24 24 H 1.09005 * 109.47259 * 59.99403 * 1 2 3 25 25 H 1.08994 * 109.47414 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46679 * 240.00438 * 2 1 3 27 27 H 1.08995 * 109.47225 * 120.00680 * 2 1 3 28 28 H 1.09009 * 109.50513 * 63.27942 * 5 3 2 29 29 H 1.09001 * 109.50908 * 303.15848 * 5 3 2 30 30 H 1.09002 * 109.47485 * 187.29415 * 7 6 5 31 31 H 1.08995 * 109.47114 * 307.29650 * 7 6 5 32 32 H 1.08992 * 109.46914 * 299.99816 * 8 7 6 33 33 H 1.08998 * 109.46543 * 60.00060 * 8 7 6 34 34 H 0.97001 * 120.00097 * 179.97438 * 12 11 9 35 35 H 1.08998 * 109.47711 * 303.75948 * 19 17 6 36 36 H 1.08999 * 109.47166 * 63.76409 * 19 17 6 37 37 H 1.08997 * 109.47152 * 293.77884 * 20 19 17 38 38 H 1.09002 * 109.46589 * 53.77542 * 20 19 17 39 39 H 1.08997 * 109.47472 * 173.77048 * 20 19 17 40 40 H 1.09003 * 109.50802 * 296.91398 * 21 17 6 41 41 H 1.09002 * 109.54129 * 176.80845 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9826 -0.8406 5 6 3.5658 1.4453 -0.1258 6 7 4.0564 2.8289 -0.0477 7 6 5.5141 2.8813 -0.2213 8 6 5.8721 2.4770 -1.6529 9 6 7.3675 2.5313 -1.8311 10 1 7.9995 2.8244 -1.0058 11 6 7.9290 2.2068 -3.0478 12 7 9.2341 2.2537 -3.2032 13 14 6.8360 1.6991 -4.4751 14 1 6.4495 2.9022 -5.2550 15 1 7.5746 0.7563 -5.3532 16 1 5.6153 1.0349 -3.9519 17 6 3.6540 3.4533 1.2210 18 1 4.0886 2.8995 2.0532 19 6 4.1474 4.9011 1.2568 20 6 3.8104 5.5214 2.6143 21 6 2.1274 3.4304 1.3333 22 8 1.6665 2.0811 1.2240 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8529 1.0108 -1.0834 29 1 3.9990 0.8592 0.6848 30 1 5.8665 3.8951 -0.0311 31 1 5.9883 2.1944 0.4796 32 1 5.5198 1.4632 -1.8429 33 1 5.3978 3.1639 -2.3537 34 1 9.6292 2.0250 -4.0592 35 1 5.2267 4.9211 1.1060 36 1 3.6594 5.4709 0.4659 37 1 2.7285 5.6026 2.7181 38 1 4.2054 4.8900 3.4102 39 1 4.2575 6.5131 2.6817 40 1 1.6944 4.0290 0.5318 41 1 1.8265 3.8409 2.2973 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403914722.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:29 Heat of formation + Delta-G solvation = -81.576485 kcal Electronic energy + Delta-G solvation = -18362.125631 eV Core-core repulsion = 15661.481383 eV Total energy + Delta-G solvation = -2700.644248 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.01282 -37.65197 -35.88391 -34.90874 -33.90327 -32.05465 -29.76644 -28.36053 -25.83027 -25.57023 -23.27709 -22.22799 -21.80867 -20.96266 -19.03375 -17.71960 -17.23477 -16.43600 -16.33797 -15.76542 -15.61564 -15.31918 -14.91813 -14.63962 -14.53264 -14.25031 -14.12140 -13.77969 -13.38828 -13.13043 -12.82814 -12.65420 -12.43634 -12.19979 -12.05858 -11.91895 -11.87341 -11.83463 -11.64723 -11.53502 -11.32266 -11.14129 -10.77804 -10.44328 -9.35467 -8.32212 -6.36763 1.34906 1.35846 1.48443 2.34241 2.73806 2.84348 3.03221 3.70799 3.83261 3.90387 4.06410 4.10333 4.22880 4.29682 4.39597 4.42492 4.49255 4.53374 4.62974 4.66984 4.69813 4.78780 4.82366 4.90313 4.98668 5.01280 5.11633 5.14798 5.22332 5.25095 5.31945 5.40048 5.42339 5.45176 5.59091 6.01614 6.09510 6.22912 6.27059 6.70379 7.28038 8.84490 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019574 B = 0.007139 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.152740 B = 3921.213907 C = 5099.308464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.065 0.935 5 C 0.021 3.979 6 N -0.541 5.541 7 C 0.078 3.922 8 C 0.003 3.997 9 C -0.534 4.534 10 H 0.031 0.969 11 C 0.008 3.992 12 N -0.949 5.949 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.248 1.248 17 C 0.047 3.953 18 H 0.034 0.966 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.073 3.927 22 O -0.390 6.390 23 H 0.054 0.946 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.029 0.971 30 H 0.073 0.927 31 H 0.011 0.989 32 H 0.017 0.983 33 H 0.021 0.979 34 H 0.267 0.733 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.049 0.490 8.536 20.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.083 0.917 5 C -0.107 4.107 6 N -0.266 5.266 7 C -0.049 4.049 8 C -0.035 4.035 9 C -0.572 4.572 10 H 0.049 0.951 11 C -0.189 4.189 12 N -0.590 5.590 13 Si 0.774 3.226 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.172 1.172 17 C -0.061 4.061 18 H 0.052 0.948 19 C -0.156 4.156 20 C -0.202 4.202 21 C -0.003 4.003 22 O -0.309 6.309 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.240 0.637 8.189 20.920 hybrid contribution 1.228 -0.523 -0.270 1.362 sum -18.011 0.114 7.919 19.676 Atomic orbital electron populations 1.21651 0.93888 1.02281 1.02056 1.21557 0.97739 0.92930 1.03113 1.22240 0.91463 0.95158 0.87076 0.91699 1.22869 0.96763 0.89496 1.01551 1.62306 1.12807 1.17416 1.34031 1.21933 0.85687 1.00329 0.96933 1.19405 0.93791 0.96246 0.94034 1.21381 0.92311 1.45846 0.97685 0.95062 1.25964 0.96304 0.94801 1.01821 1.70060 1.12197 1.50660 1.26074 0.85643 0.79454 0.78982 0.78479 1.19145 1.20778 1.17157 1.22432 0.97569 0.96290 0.89829 0.94823 1.21593 1.00906 0.93590 0.99559 1.21763 1.02553 1.00794 0.95114 1.22824 0.90861 0.83216 1.03422 1.87922 1.76618 1.27163 1.39244 0.92683 0.92514 0.91390 0.89700 0.91505 0.90268 0.95232 0.90873 0.97048 0.96444 0.96108 0.92383 0.92866 0.91003 0.90892 0.92808 0.91623 0.92102 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.81 71.98 0.71 -1.86 16 2 C -0.12 -2.51 5.64 30.60 0.17 -2.34 16 3 C 0.10 2.62 2.80 30.62 0.09 2.70 16 4 H 0.07 1.73 8.14 -2.39 -0.02 1.72 16 5 C 0.02 0.70 4.73 86.31 0.41 1.10 16 6 N -0.54 -18.76 4.53 -870.00 -3.94 -22.70 16 7 C 0.08 3.27 4.69 86.31 0.41 3.68 16 8 C 0.00 0.14 4.00 29.85 0.12 0.26 16 9 C -0.53 -31.46 9.66 25.60 0.25 -31.21 16 10 H 0.03 2.02 7.99 -2.91 -0.02 2.00 16 11 C 0.01 0.49 5.47 84.66 0.46 0.95 16 12 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 13 Si 0.95 44.97 27.47 68.60 1.88 46.86 16 14 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 15 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 16 H -0.25 -10.93 6.54 99.48 0.65 -10.28 16 17 C 0.05 1.35 2.07 44.92 0.09 1.44 16 18 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 19 C -0.12 -3.03 5.26 30.60 0.16 -2.87 16 20 C -0.14 -2.71 9.49 71.98 0.68 -2.02 16 21 C 0.07 1.75 5.94 72.01 0.43 2.17 16 22 O -0.39 -10.46 10.02 -148.98 -1.49 -11.95 16 23 H 0.05 1.06 7.83 -2.39 -0.02 1.05 16 24 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.08 2.72 6.42 -2.38 -0.02 2.70 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 3.05 5.64 -2.39 -0.01 3.04 16 31 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 32 H 0.02 0.83 5.60 -2.39 -0.01 0.82 16 33 H 0.02 1.00 7.57 -2.39 -0.02 0.98 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.05 1.59 5.95 -2.39 -0.01 1.57 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.09 6.93 -2.39 -0.02 1.08 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 40 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 2.21 6.85 -2.39 -0.02 2.19 16 Total: -1.00 -66.28 313.07 1.63 -64.64 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.91 Total: 11.00 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 3.97 Total: -28.00 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.64 Total: -82.56 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.49 Total: -11.95 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.28 1.63 -64.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403914722.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.936 kcal (2) G-P(sol) polarization free energy of solvation -66.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds