Wall clock time and date at job start Sun Mar 29 2020 22:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08998 * 109.54133 * 54.89504 * 3 2 1 5 5 C 1.53104 * 109.50342 * 175.00062 * 3 2 1 6 6 N 1.47016 * 109.29077 * 176.76104 * 5 3 2 7 7 C 1.46904 * 110.99565 * 177.62813 * 6 5 3 8 8 C 1.53003 * 109.46870 * 175.69616 * 7 6 5 9 9 C 1.50702 * 109.47197 * 174.46719 * 8 7 6 10 10 H 1.08000 * 119.99561 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99808 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99801 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47113 * 59.99860 * 13 11 9 15 15 H 1.48494 * 109.47329 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47171 * 299.99823 * 13 11 9 17 17 C 1.47009 * 110.74995 * 301.44694 * 6 5 3 18 18 H 1.09006 * 109.50383 * 178.50384 * 17 6 5 19 19 C 1.52994 * 109.51129 * 298.59534 * 17 6 5 20 20 C 1.52997 * 109.47562 * 185.23581 * 19 17 6 21 21 C 1.53095 * 109.29533 * 58.55544 * 17 6 5 22 22 O 1.43012 * 109.50843 * 294.77837 * 3 2 1 23 23 H 1.09004 * 109.46924 * 300.00172 * 1 2 3 24 24 H 1.08993 * 109.47060 * 59.99825 * 1 2 3 25 25 H 1.09003 * 109.46825 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47480 * 239.99579 * 2 1 3 27 27 H 1.09005 * 109.47251 * 119.99753 * 2 1 3 28 28 H 1.08998 * 109.50594 * 296.71306 * 5 3 2 29 29 H 1.08994 * 109.50836 * 56.80428 * 5 3 2 30 30 H 1.09001 * 109.47263 * 295.69159 * 7 6 5 31 31 H 1.09000 * 109.47040 * 55.69806 * 7 6 5 32 32 H 1.09000 * 109.46894 * 294.46960 * 8 7 6 33 33 H 1.08998 * 109.47012 * 54.46554 * 8 7 6 34 34 H 0.97001 * 120.00042 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.47062 * 305.23864 * 19 17 6 36 36 H 1.08995 * 109.47124 * 65.23458 * 19 17 6 37 37 H 1.09003 * 109.47223 * 293.92308 * 20 19 17 38 38 H 1.08998 * 109.47295 * 53.91680 * 20 19 17 39 39 H 1.09000 * 109.47420 * 173.92054 * 20 19 17 40 40 H 1.08993 * 109.51098 * 183.23800 * 21 17 6 41 41 H 1.08999 * 109.54342 * 63.12522 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9831 0.8403 5 6 3.5658 1.4453 0.1258 6 7 4.0571 2.8287 0.0473 7 6 5.5150 2.8801 0.2204 8 6 6.0012 4.3178 0.0262 9 6 7.4738 4.3964 0.3365 10 1 8.0093 3.5096 0.6421 11 6 8.1372 5.6004 0.2313 12 7 7.4848 6.6805 -0.1393 13 14 9.9627 5.6976 0.6153 14 1 10.7094 4.7956 -0.2980 15 1 10.4346 7.0929 0.4270 16 1 10.1956 5.2814 2.0216 17 6 3.6539 3.4534 -1.2209 18 1 4.0053 4.4850 -1.2464 19 6 4.2638 2.6770 -2.3897 20 6 3.9528 3.4013 -3.7009 21 6 2.1273 3.4306 -1.3333 22 8 1.6665 2.0811 -1.2239 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8529 1.0109 1.0834 29 1 3.9989 0.8587 -0.6844 30 1 5.7740 2.5414 1.2235 31 1 5.9914 2.2329 -0.5160 32 1 5.8307 4.6227 -1.0063 33 1 5.4529 4.9803 0.6959 34 1 7.9516 7.5275 -0.2137 35 1 5.3439 2.6114 -2.2581 36 1 3.8400 1.6733 -2.4196 37 1 2.8790 3.3722 -3.8863 38 1 4.2812 4.4382 -3.6301 39 1 4.4764 2.9095 -4.5208 40 1 1.8270 3.8407 -2.2974 41 1 1.6937 4.0292 -0.5322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403914724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:31 Heat of formation + Delta-G solvation = -63.424081 kcal Electronic energy + Delta-G solvation = -18548.476002 eV Core-core repulsion = 15848.618902 eV Total energy + Delta-G solvation = -2699.857100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90452 -36.25531 -34.17733 -33.08206 -32.29164 -29.99783 -28.62711 -26.51418 -24.32864 -23.95661 -22.48848 -21.66520 -20.26986 -18.45604 -16.70624 -16.12537 -15.85001 -15.27135 -14.85528 -14.50641 -14.15166 -13.87461 -13.48788 -13.43840 -13.05778 -12.54062 -12.20495 -12.09148 -11.74242 -11.53421 -11.40796 -11.21321 -11.02418 -10.97451 -10.81844 -10.74662 -10.56614 -10.44016 -10.12512 -9.74665 -9.49656 -9.12429 -9.07571 -8.34901 -7.67752 -6.00990 -4.03270 3.32654 3.37126 3.39428 3.95578 4.30578 4.49726 4.91430 5.05491 5.18931 5.24642 5.27094 5.35157 5.42290 5.55233 5.58590 5.60985 5.74306 5.82483 5.84169 5.90648 5.94597 6.00209 6.10547 6.17603 6.25040 6.30854 6.34670 6.35655 6.42021 6.64119 6.70277 6.93253 7.42051 7.46233 7.56590 7.75741 7.86096 8.04274 8.41729 9.03021 9.60445 11.10345 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035916 B = 0.005544 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.405179 B = 5049.001943 C = 5441.912358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.094 3.906 4 H 0.062 0.938 5 C 0.020 3.980 6 N -0.532 5.532 7 C 0.061 3.939 8 C 0.025 3.975 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.060 3.940 12 N -0.894 5.894 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.047 3.953 18 H 0.104 0.896 19 C -0.151 4.151 20 C -0.145 4.145 21 C 0.069 3.931 22 O -0.382 6.382 23 H 0.051 0.949 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.039 0.961 30 H 0.062 0.938 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.024 0.976 34 H 0.261 0.739 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.048 0.952 40 H 0.094 0.906 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.730 -10.081 -2.414 15.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.036 3.964 4 H 0.080 0.920 5 C -0.109 4.109 6 N -0.255 5.255 7 C -0.065 4.065 8 C -0.012 4.012 9 C -0.561 4.561 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.062 4.062 18 H 0.122 0.878 19 C -0.190 4.190 20 C -0.203 4.203 21 C -0.008 4.008 22 O -0.301 6.301 23 H 0.070 0.930 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.042 0.958 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.024 -9.712 -2.184 15.610 hybrid contribution 1.730 -0.160 -0.228 1.753 sum -10.293 -9.873 -2.412 14.465 Atomic orbital electron populations 1.21692 0.95341 1.01127 1.02270 1.21514 0.96570 0.94734 1.02473 1.22155 0.93340 0.93435 0.87442 0.91962 1.22758 0.95379 0.91398 1.01318 1.62560 1.15192 1.15380 1.32409 1.22356 0.83438 1.01300 0.99432 1.19156 0.95406 0.89293 0.97336 1.21135 0.94334 0.94548 1.46050 0.92880 1.24971 0.98174 0.95763 0.95262 1.69952 1.36113 0.99575 1.47615 0.86664 0.85496 0.76974 0.78903 1.20316 1.21263 1.20226 1.22453 0.94966 1.00871 0.87932 0.87771 1.22043 1.01733 0.99739 0.95441 1.21709 1.00802 1.00867 0.96916 1.22712 0.93205 0.83195 1.01679 1.87895 1.76751 1.26751 1.38677 0.92956 0.91995 0.93076 0.91409 0.90779 0.90550 0.94250 0.91963 0.95971 0.96287 0.95755 0.92942 0.91222 0.92085 0.92988 0.92393 0.93297 0.88795 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.81 37.16 0.36 -1.10 16 2 C -0.12 -1.27 5.64 -26.73 -0.15 -1.42 16 3 C 0.09 1.30 2.80 -26.68 -0.07 1.22 16 4 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 5 C 0.02 0.31 4.55 -3.71 -0.02 0.29 16 6 N -0.53 -9.82 4.79 -226.34 -1.08 -10.90 16 7 C 0.06 1.30 4.52 -3.82 -0.02 1.29 16 8 C 0.03 0.65 4.26 -27.88 -0.12 0.53 16 9 C -0.52 -14.73 9.11 -34.44 -0.31 -15.04 16 10 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 13 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 C 0.05 0.81 1.93 -67.61 -0.13 0.68 16 18 H 0.10 2.06 6.19 -51.93 -0.32 1.74 16 19 C -0.15 -2.49 4.58 -26.74 -0.12 -2.61 16 20 C -0.15 -2.10 9.53 37.16 0.35 -1.74 16 21 C 0.07 1.03 6.24 37.21 0.23 1.26 16 22 O -0.38 -5.70 9.38 -35.23 -0.33 -6.03 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.67 7.83 -51.93 -0.41 0.27 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.62 6.51 -51.93 -0.34 0.28 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.02 0.47 6.68 -51.93 -0.35 0.12 16 32 H 0.02 0.51 6.57 -51.93 -0.34 0.17 16 33 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.07 1.31 6.39 -51.93 -0.33 0.98 16 36 H 0.06 0.99 6.22 -51.93 -0.32 0.67 16 37 H 0.05 0.67 6.81 -51.93 -0.35 0.32 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.24 6.58 -51.93 -0.34 0.90 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 312.14 15.07 4.70 4.70 Total: -1.00 -29.47 312.14 -8.38 -37.85 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.30 Total: -1.28 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: -0.09 Total: -15.03 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.35 Total: -36.83 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.33 Total: -6.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.47 -8.38 -37.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403914724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.574 kcal (2) G-P(sol) polarization free energy of solvation -29.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds