Wall clock time and date at job start Sun Mar 29 2020 22:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46848 * 2 1 4 4 H 1.08998 * 109.54133 * 54.89504 * 3 2 1 5 5 C 1.53104 * 109.50342 * 175.00062 * 3 2 1 6 6 N 1.47016 * 109.29077 * 176.76104 * 5 3 2 7 7 C 1.46904 * 110.99565 * 177.62813 * 6 5 3 8 8 C 1.53003 * 109.46870 * 175.69616 * 7 6 5 9 9 C 1.50702 * 109.47197 * 174.46719 * 8 7 6 10 10 H 1.08000 * 119.99561 * 359.97438 * 9 8 7 11 11 C 1.37872 * 119.99808 * 180.02562 * 9 8 7 12 12 N 1.31515 * 120.00257 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99801 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47113 * 59.99860 * 13 11 9 15 15 H 1.48494 * 109.47329 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47171 * 299.99823 * 13 11 9 17 17 C 1.47009 * 110.74995 * 301.44694 * 6 5 3 18 18 H 1.09006 * 109.50383 * 178.50384 * 17 6 5 19 19 C 1.52994 * 109.51129 * 298.59534 * 17 6 5 20 20 C 1.52997 * 109.47562 * 185.23581 * 19 17 6 21 21 C 1.53095 * 109.29533 * 58.55544 * 17 6 5 22 22 O 1.43012 * 109.50843 * 294.77837 * 3 2 1 23 23 H 1.09004 * 109.46924 * 300.00172 * 1 2 3 24 24 H 1.08993 * 109.47060 * 59.99825 * 1 2 3 25 25 H 1.09003 * 109.46825 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47480 * 239.99579 * 2 1 3 27 27 H 1.09005 * 109.47251 * 119.99753 * 2 1 3 28 28 H 1.08998 * 109.50594 * 296.71306 * 5 3 2 29 29 H 1.08994 * 109.50836 * 56.80428 * 5 3 2 30 30 H 1.09001 * 109.47263 * 295.69159 * 7 6 5 31 31 H 1.09000 * 109.47040 * 55.69806 * 7 6 5 32 32 H 1.09000 * 109.46894 * 294.46960 * 8 7 6 33 33 H 1.08998 * 109.47012 * 54.46554 * 8 7 6 34 34 H 0.97001 * 120.00042 * 180.02562 * 12 11 9 35 35 H 1.09003 * 109.47062 * 305.23864 * 19 17 6 36 36 H 1.08995 * 109.47124 * 65.23458 * 19 17 6 37 37 H 1.09003 * 109.47223 * 293.92308 * 20 19 17 38 38 H 1.08998 * 109.47295 * 53.91680 * 20 19 17 39 39 H 1.09000 * 109.47420 * 173.92054 * 20 19 17 40 40 H 1.08993 * 109.51098 * 183.23800 * 21 17 6 41 41 H 1.08999 * 109.54342 * 63.12522 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9831 0.8403 5 6 3.5658 1.4453 0.1258 6 7 4.0571 2.8287 0.0473 7 6 5.5150 2.8801 0.2204 8 6 6.0012 4.3178 0.0262 9 6 7.4738 4.3964 0.3365 10 1 8.0093 3.5096 0.6421 11 6 8.1372 5.6004 0.2313 12 7 7.4848 6.6805 -0.1393 13 14 9.9627 5.6976 0.6153 14 1 10.7094 4.7956 -0.2980 15 1 10.4346 7.0929 0.4270 16 1 10.1956 5.2814 2.0216 17 6 3.6539 3.4534 -1.2209 18 1 4.0053 4.4850 -1.2464 19 6 4.2638 2.6770 -2.3897 20 6 3.9528 3.4013 -3.7009 21 6 2.1273 3.4306 -1.3333 22 8 1.6665 2.0811 -1.2239 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.8529 1.0109 1.0834 29 1 3.9989 0.8587 -0.6844 30 1 5.7740 2.5414 1.2235 31 1 5.9914 2.2329 -0.5160 32 1 5.8307 4.6227 -1.0063 33 1 5.4529 4.9803 0.6959 34 1 7.9516 7.5275 -0.2137 35 1 5.3439 2.6114 -2.2581 36 1 3.8400 1.6733 -2.4196 37 1 2.8790 3.3722 -3.8863 38 1 4.2812 4.4382 -3.6301 39 1 4.4764 2.9095 -4.5208 40 1 1.8270 3.8407 -2.2974 41 1 1.6937 4.0292 -0.5322 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403914724.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:31 Heat of formation + Delta-G solvation = -81.977984 kcal Electronic energy + Delta-G solvation = -18549.280560 eV Core-core repulsion = 15848.618902 eV Total energy + Delta-G solvation = -2700.661658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21884 -37.63945 -35.44571 -34.98977 -33.57404 -31.78819 -29.84429 -28.09320 -25.82129 -25.45502 -23.79259 -23.05862 -21.69144 -19.85178 -18.66582 -17.43739 -17.25592 -16.72010 -16.49504 -16.06929 -15.62890 -15.03317 -14.87034 -14.53350 -14.27042 -14.11144 -14.03261 -13.44670 -13.09732 -12.84726 -12.81465 -12.71712 -12.55705 -12.45004 -12.25353 -12.00097 -11.89228 -11.83936 -11.71365 -11.32372 -11.24174 -11.06895 -10.55150 -10.43435 -9.16522 -8.20881 -6.32035 1.39156 1.41980 1.49887 2.39132 2.80513 2.97717 3.12630 3.79453 3.88508 3.92684 4.09085 4.17703 4.27959 4.36455 4.43682 4.49308 4.51808 4.59294 4.62327 4.64264 4.71819 4.83525 4.87542 5.01189 5.04211 5.05760 5.10925 5.13941 5.24140 5.27479 5.38344 5.44800 5.48849 5.63049 5.77468 6.05721 6.18859 6.27236 6.30376 6.83742 7.36900 8.90811 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.035916 B = 0.005544 C = 0.005144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.405179 B = 5049.001943 C = 5441.912358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C 0.095 3.905 4 H 0.060 0.940 5 C 0.021 3.979 6 N -0.543 5.543 7 C 0.079 3.921 8 C 0.038 3.962 9 C -0.546 4.546 10 H 0.058 0.942 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.964 3.036 14 H -0.268 1.268 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.046 3.954 18 H 0.071 0.929 19 C -0.142 4.142 20 C -0.140 4.140 21 C 0.076 3.924 22 O -0.383 6.383 23 H 0.054 0.946 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.061 0.939 31 H 0.022 0.978 32 H -0.001 1.001 33 H -0.009 1.009 34 H 0.264 0.736 35 H 0.040 0.960 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.060 0.940 40 H 0.114 0.886 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 -11.611 -2.415 16.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C 0.037 3.963 4 H 0.078 0.922 5 C -0.107 4.107 6 N -0.267 5.267 7 C -0.049 4.049 8 C 0.001 3.999 9 C -0.584 4.584 10 H 0.076 0.924 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.788 3.212 14 H -0.193 1.193 15 H -0.207 1.207 16 H -0.192 1.192 17 C -0.063 4.063 18 H 0.089 0.911 19 C -0.181 4.181 20 C -0.198 4.198 21 C -0.001 4.001 22 O -0.302 6.302 23 H 0.073 0.927 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.105 0.895 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.040 0.960 32 H 0.017 0.983 33 H 0.009 0.991 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.364 -11.261 -2.185 16.865 hybrid contribution 1.790 0.320 -0.220 1.832 sum -10.573 -10.941 -2.405 15.404 Atomic orbital electron populations 1.21665 0.94383 1.02195 1.01874 1.21529 0.97329 0.92602 1.03339 1.22287 0.91885 0.95177 0.86958 0.92214 1.22872 0.96674 0.89295 1.01892 1.62489 1.13079 1.17711 1.33372 1.21985 0.85571 0.98053 0.99258 1.18932 0.94409 0.91499 0.95103 1.21570 0.95626 0.95011 1.46242 0.92413 1.25905 1.03303 0.95274 0.94827 1.70089 1.38208 1.00189 1.48426 0.85527 0.79276 0.77255 0.79147 1.19278 1.20728 1.19192 1.22417 0.96913 0.99065 0.87904 0.91077 1.21934 0.99712 1.00243 0.96211 1.21677 1.02299 0.99792 0.96057 1.22671 0.90963 0.83629 1.02821 1.87907 1.76505 1.26448 1.39303 0.92668 0.93082 0.91308 0.91418 0.89044 0.89468 0.94310 0.92022 0.96026 0.98282 0.99056 0.92749 0.94128 0.91288 0.90899 0.93760 0.92117 0.86779 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.81 71.98 0.71 -1.77 16 2 C -0.11 -2.14 5.64 30.60 0.17 -1.96 16 3 C 0.09 2.44 2.80 30.63 0.09 2.52 16 4 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 5 C 0.02 0.62 4.55 86.32 0.39 1.01 16 6 N -0.54 -20.23 4.79 -870.00 -4.16 -24.39 16 7 C 0.08 3.42 4.52 86.30 0.39 3.81 16 8 C 0.04 2.04 4.26 29.85 0.13 2.16 16 9 C -0.55 -31.47 9.11 25.60 0.23 -31.23 16 10 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 11 C 0.01 0.30 5.46 84.65 0.46 0.76 16 12 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 13 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 14 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 17 C 0.05 1.62 1.93 44.92 0.09 1.71 16 18 H 0.07 2.98 6.19 -2.38 -0.01 2.96 16 19 C -0.14 -4.70 4.58 30.59 0.14 -4.56 16 20 C -0.14 -3.96 9.53 71.98 0.69 -3.28 16 21 C 0.08 2.21 6.24 72.01 0.45 2.66 16 22 O -0.38 -10.73 9.38 -148.98 -1.40 -12.13 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 25 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 29 H 0.04 1.17 6.51 -2.39 -0.02 1.15 16 30 H 0.06 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.02 0.94 6.68 -2.39 -0.02 0.92 16 32 H 0.00 -0.06 6.57 -2.39 -0.02 -0.08 16 33 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 34 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.04 1.56 6.39 -2.39 -0.02 1.54 16 36 H 0.07 2.16 6.22 -2.39 -0.01 2.15 16 37 H 0.07 1.74 6.81 -2.39 -0.02 1.73 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 2.83 6.58 -2.39 -0.02 2.82 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -63.87 312.14 1.65 -62.21 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.97 Total: 12.44 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 3.93 Total: -28.18 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -3.88 Total: -80.86 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -1.40 Total: -12.13 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -63.87 1.65 -62.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403914724.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.765 kcal (2) G-P(sol) polarization free energy of solvation -63.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds