Wall clock time and date at job start Sun Mar 29 2020 22:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47377 * 2 1 4 4 H 1.09004 * 109.50736 * 304.91033 * 3 2 1 5 5 C 1.53100 * 109.50678 * 184.78047 * 3 2 1 6 6 N 1.47022 * 109.25667 * 183.21700 * 5 3 2 7 7 C 1.46903 * 110.99619 * 182.39617 * 6 5 3 8 8 C 1.52990 * 109.47377 * 52.76750 * 7 6 5 9 9 C 1.50698 * 109.47189 * 179.97438 * 8 7 6 10 10 H 1.08009 * 119.99836 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00439 * 179.72481 * 9 8 7 12 12 N 1.31512 * 119.99883 * 0.27728 * 11 9 8 13 13 Si 1.86805 * 120.00233 * 180.27820 * 11 9 8 14 14 H 1.48495 * 109.47018 * 60.00134 * 13 11 9 15 15 H 1.48497 * 109.46743 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.46900 * 300.00008 * 13 11 9 17 17 C 1.47008 * 110.75320 * 58.61689 * 6 5 3 18 18 H 1.09000 * 109.50453 * 181.40683 * 17 6 5 19 19 C 1.52998 * 109.50727 * 61.31804 * 17 6 5 20 20 C 1.53000 * 109.47316 * 174.21091 * 19 17 6 21 21 C 1.53096 * 109.25862 * 301.38324 * 17 6 5 22 22 O 1.43014 * 109.25966 * 56.84884 * 21 17 6 23 23 H 1.09003 * 109.46606 * 59.99831 * 1 2 3 24 24 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47065 * 300.00348 * 1 2 3 26 26 H 1.09002 * 109.47347 * 239.99604 * 2 1 3 27 27 H 1.09003 * 109.46606 * 120.00169 * 2 1 3 28 28 H 1.08995 * 109.50642 * 63.28296 * 5 3 2 29 29 H 1.08997 * 109.50678 * 303.14949 * 5 3 2 30 30 H 1.08998 * 109.46888 * 292.76656 * 7 6 5 31 31 H 1.09000 * 109.46493 * 172.77337 * 7 6 5 32 32 H 1.08998 * 109.47188 * 60.00090 * 8 7 6 33 33 H 1.08999 * 109.47365 * 300.00119 * 8 7 6 34 34 H 0.97001 * 120.00047 * 179.97438 * 12 11 9 35 35 H 1.08999 * 109.47234 * 294.20827 * 19 17 6 36 36 H 1.08999 * 109.47488 * 54.21382 * 19 17 6 37 37 H 1.09005 * 109.46922 * 65.03382 * 20 19 17 38 38 H 1.08998 * 109.47597 * 185.03600 * 20 19 17 39 39 H 1.09004 * 109.47028 * 305.03797 * 20 19 17 40 40 H 1.09005 * 109.50920 * 176.78492 * 21 17 6 41 41 H 1.09005 * 109.50839 * 296.87165 * 21 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6070 1.9816 -0.8426 5 6 3.5663 1.4450 -0.1203 6 7 4.0565 2.8288 -0.0422 7 6 5.5149 2.8809 -0.2106 8 6 5.9070 2.1429 -1.4921 9 6 7.4031 2.1969 -1.6652 10 1 8.0132 2.7064 -0.9340 11 6 7.9935 1.5907 -2.7537 12 7 7.2506 0.9699 -3.6439 13 14 9.8487 1.6510 -2.9641 14 1 10.5005 1.0052 -1.7966 15 1 10.2298 0.9295 -4.2048 16 1 10.2905 3.0656 -3.0580 17 6 3.6497 3.4549 1.2242 18 1 4.0017 4.4862 1.2499 19 6 4.2553 2.6790 2.3955 20 6 3.9524 3.4119 3.7039 21 6 2.1226 3.4322 1.3310 22 8 1.6621 2.0826 1.2217 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 1.8934 -0.5139 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 3.8568 1.0093 -1.0762 29 1 3.9964 0.8601 0.6927 30 1 5.9965 2.4059 0.6441 31 1 5.8360 3.9205 -0.2772 32 1 5.4254 2.6179 -2.3468 33 1 5.5859 1.1034 -1.4255 34 1 7.6660 0.5438 -4.4099 35 1 3.8234 1.6789 2.4309 36 1 5.3346 2.6042 2.2625 37 1 2.8769 3.4084 3.8817 38 1 4.4585 2.9088 4.5278 39 1 4.3058 4.4407 3.6343 40 1 1.8189 3.8436 2.2936 41 1 1.6926 4.0303 0.5275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403914726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:34 Heat of formation + Delta-G solvation = -62.480856 kcal Electronic energy + Delta-G solvation = -18495.750990 eV Core-core repulsion = 15795.934791 eV Total energy + Delta-G solvation = -2699.816199 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.90389 -36.15373 -34.38988 -33.12645 -32.30154 -29.66889 -28.84080 -26.58553 -24.38727 -23.95049 -22.80699 -21.22748 -20.27483 -18.61514 -16.71669 -16.28799 -15.73214 -15.30126 -14.77668 -14.42961 -14.29497 -13.81950 -13.47825 -13.29278 -13.09373 -12.82816 -12.17539 -12.13016 -11.71461 -11.65974 -11.51353 -11.15148 -11.00475 -10.94197 -10.83551 -10.82080 -10.55163 -10.52579 -10.06156 -9.73942 -9.49475 -9.14348 -9.08971 -8.34865 -7.67358 -6.01552 -4.03939 3.32374 3.36787 3.39124 3.97124 4.31144 4.49481 4.99503 5.05318 5.07707 5.20484 5.31404 5.34599 5.37943 5.49180 5.53721 5.63486 5.66378 5.74073 5.86587 5.90617 6.01730 6.05457 6.06282 6.13728 6.21298 6.24956 6.30338 6.40795 6.43471 6.52142 6.60324 6.93399 7.42222 7.45847 7.55978 7.75494 7.84315 8.03480 8.41235 9.02437 9.59774 11.09825 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.006157 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.792233 B = 4546.524783 C = 5387.578787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.063 0.937 5 C 0.020 3.980 6 N -0.531 5.531 7 C 0.060 3.940 8 C 0.024 3.976 9 C -0.522 4.522 10 H 0.053 0.947 11 C 0.059 3.941 12 N -0.894 5.894 13 Si 0.893 3.107 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.046 3.954 18 H 0.085 0.915 19 C -0.156 4.156 20 C -0.145 4.145 21 C 0.071 3.929 22 O -0.382 6.382 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.097 0.903 29 H 0.039 0.961 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.024 0.976 33 H 0.018 0.982 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.054 0.946 38 H 0.049 0.951 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.266 1.756 10.205 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.081 0.919 5 C -0.108 4.108 6 N -0.255 5.255 7 C -0.067 4.067 8 C -0.013 4.013 9 C -0.561 4.561 10 H 0.071 0.929 11 C -0.142 4.142 12 N -0.533 5.533 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.063 4.063 18 H 0.103 0.897 19 C -0.195 4.195 20 C -0.203 4.203 21 C -0.006 4.006 22 O -0.301 6.301 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.115 0.885 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.109 0.891 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.573 1.833 9.771 15.257 hybrid contribution 1.739 -0.275 0.267 1.781 sum -9.834 1.558 10.038 14.138 Atomic orbital electron populations 1.21688 0.95456 1.01127 1.02059 1.21519 0.96381 0.94662 1.02834 1.22241 0.93801 0.93482 0.86914 0.91898 1.22845 0.94330 0.90578 1.03015 1.62561 1.15145 1.16902 1.30879 1.22386 0.83537 1.00809 0.99953 1.19171 0.95816 0.95093 0.91228 1.21137 0.92271 1.34706 1.07978 0.92857 1.24984 0.98093 0.95301 0.95862 1.69952 1.35227 1.35784 1.12319 0.86651 0.85715 0.78203 0.77393 1.20309 1.21248 1.20208 1.22397 0.95877 0.99230 0.88840 0.89728 1.22119 1.01592 1.00612 0.95207 1.21724 1.01266 1.00120 0.97154 1.22614 0.92698 0.83871 1.01396 1.87896 1.76572 1.26220 1.39426 0.92960 0.93057 0.92210 0.90330 0.91435 0.88457 0.94272 0.95614 0.91998 0.95794 0.96332 0.92919 0.91311 0.91449 0.92715 0.93155 0.92984 0.89057 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.16 0.36 -1.28 16 2 C -0.12 -1.50 5.65 -26.74 -0.15 -1.65 16 3 C 0.09 1.41 2.81 -26.68 -0.07 1.34 16 4 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 5 C 0.02 0.36 4.04 -3.71 -0.01 0.35 16 6 N -0.53 -9.80 4.78 -226.35 -1.08 -10.88 16 7 C 0.06 1.27 4.83 -3.83 -0.02 1.25 16 8 C 0.02 0.63 4.50 -27.89 -0.13 0.50 16 9 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 10 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 13 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 17 C 0.05 0.70 2.45 -67.61 -0.17 0.53 16 18 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 19 C -0.16 -2.27 4.63 -26.73 -0.12 -2.39 16 20 C -0.14 -1.68 9.57 37.16 0.36 -1.32 16 21 C 0.07 0.97 6.25 37.21 0.23 1.20 16 22 O -0.38 -5.70 9.36 -35.23 -0.33 -6.03 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.10 1.92 6.06 -51.93 -0.31 1.61 16 29 H 0.04 0.71 6.52 -51.93 -0.34 0.37 16 30 H 0.03 0.55 6.08 -51.93 -0.32 0.23 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.02 0.50 6.27 -51.93 -0.33 0.18 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.07 6.23 -51.93 -0.32 0.75 16 36 H 0.07 1.08 6.12 -51.93 -0.32 0.76 16 37 H 0.05 0.59 6.78 -51.93 -0.35 0.24 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.04 6.58 -51.93 -0.34 0.70 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 311.46 15.07 4.69 4.69 Total: -1.00 -29.57 311.46 -8.36 -37.94 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -7.23 Total: -1.34 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -0.13 Total: -14.99 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: -0.35 Total: -36.91 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.33 Total: -6.03 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.57 -8.36 -37.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403914726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.546 kcal (2) G-P(sol) polarization free energy of solvation -29.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds