Wall clock time and date at job start Sun Mar 29 2020 22:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46909 * 2 1 4 4 H 1.09008 * 109.54240 * 54.89295 * 3 2 1 5 5 C 1.53103 * 109.50360 * 174.99874 * 3 2 1 6 6 N 1.47016 * 109.29298 * 176.80966 * 5 3 2 7 7 C 1.46897 * 110.99785 * 177.58836 * 6 5 3 8 8 C 1.53000 * 109.47390 * 66.04418 * 7 6 5 9 9 C 1.53002 * 109.47132 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46818 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00004 * 0.02562 * 10 9 8 12 12 C 1.37877 * 119.99663 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00036 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99819 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47360 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47494 * 120.00081 * 14 12 10 17 17 H 1.48503 * 109.46818 * 240.00087 * 14 12 10 18 18 C 1.47015 * 110.75076 * 301.35892 * 6 5 3 19 19 H 1.08997 * 109.50950 * 298.64630 * 18 6 5 20 20 C 1.52997 * 109.50701 * 178.55038 * 18 6 5 21 21 C 1.53103 * 109.25538 * 58.61911 * 18 6 5 22 22 O 1.43016 * 109.25809 * 303.14858 * 21 18 6 23 23 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47195 * 299.99917 * 1 2 3 25 25 H 1.09002 * 109.47514 * 59.99637 * 1 2 3 26 26 H 1.09001 * 109.46943 * 240.00569 * 2 1 3 27 27 H 1.08994 * 109.46748 * 120.00057 * 2 1 3 28 28 H 1.09002 * 109.50635 * 56.85057 * 5 3 2 29 29 H 1.09003 * 109.50698 * 296.76669 * 5 3 2 30 30 H 1.09004 * 109.46726 * 186.04189 * 7 6 5 31 31 H 1.09001 * 109.47263 * 306.04323 * 7 6 5 32 32 H 1.08999 * 109.47103 * 300.00090 * 8 7 6 33 33 H 1.09001 * 109.46995 * 59.99741 * 8 7 6 34 34 H 1.08995 * 109.47589 * 299.99686 * 9 8 7 35 35 H 1.09001 * 109.46761 * 60.00317 * 9 8 7 36 36 H 0.97003 * 119.99714 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.46950 * 60.00642 * 20 18 6 38 38 H 1.09004 * 109.47425 * 180.02562 * 20 18 6 39 39 H 1.08998 * 109.47574 * 300.00645 * 20 18 6 40 40 H 1.08998 * 109.50794 * 63.08655 * 21 18 6 41 41 H 1.09002 * 109.50553 * 183.16904 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9832 0.8404 5 6 3.5658 1.4452 0.1258 6 7 4.0571 2.8287 0.0485 7 6 5.5148 2.8802 0.2226 8 6 6.1945 2.1859 -0.9593 9 6 7.7128 2.2402 -0.7782 10 6 8.3822 1.5557 -1.9421 11 1 7.7845 1.1256 -2.7321 12 6 9.7577 1.4788 -1.9982 13 7 10.4854 2.0022 -1.0359 14 14 10.5875 0.6311 -3.4412 15 1 9.5537 0.1293 -4.3818 16 1 11.4687 1.5982 -4.1435 17 1 11.3998 -0.5088 -2.9451 18 6 3.6557 3.4539 -1.2202 19 1 4.0907 2.9005 -2.0523 20 6 4.1497 4.9014 -1.2552 21 6 2.1290 3.4318 -1.3331 22 8 1.6674 2.0826 -1.2244 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 3.9989 0.8593 -0.6849 29 1 3.8529 1.0100 1.0831 30 1 5.8387 3.9200 0.2684 31 1 5.7883 2.3733 1.1480 32 1 5.8706 1.1462 -1.0052 33 1 5.9210 2.6929 -1.8847 34 1 8.0364 3.2799 -0.7326 35 1 7.9866 1.7334 0.1473 36 1 11.4531 1.9477 -1.0753 37 1 5.2363 4.9166 -1.1709 38 1 3.8514 5.3646 -2.1958 39 1 3.7131 5.4547 -0.4237 40 1 1.6961 4.0303 -0.5315 41 1 1.8293 3.8433 -2.2970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403968645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:36 Heat of formation + Delta-G solvation = -66.572784 kcal Electronic energy + Delta-G solvation = -18180.781437 eV Core-core repulsion = 15480.787798 eV Total energy + Delta-G solvation = -2699.993638 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89802 -36.61271 -34.21727 -33.46334 -31.69513 -30.92807 -27.99306 -26.66788 -25.22769 -23.15948 -22.81581 -21.08064 -20.94509 -18.89508 -16.69634 -16.42166 -15.90932 -15.33499 -14.74389 -14.62354 -14.30708 -13.91690 -13.69905 -13.63451 -13.03732 -12.43359 -12.28811 -12.18182 -11.82212 -11.70076 -11.49895 -11.27093 -11.09415 -11.01864 -10.86381 -10.84615 -10.64815 -10.56169 -10.28780 -9.62709 -9.42599 -9.38519 -9.17370 -8.36248 -7.90338 -6.00966 -4.03466 3.29641 3.37168 3.41599 3.78775 4.05751 4.45116 4.76892 4.92447 5.01984 5.11056 5.21753 5.31745 5.33872 5.34902 5.50701 5.60635 5.64734 5.70255 5.79217 5.85293 5.86698 5.89836 5.98278 6.00047 6.10380 6.15902 6.24419 6.31904 6.35531 6.59390 6.79993 7.04012 7.21002 7.32613 7.36988 7.65469 7.79656 7.98505 8.42086 9.03589 9.60830 11.10120 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028763 B = 0.005073 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.250513 B = 5517.858339 C = 5918.521257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.095 3.905 4 H 0.062 0.938 5 C 0.020 3.980 6 N -0.534 5.534 7 C 0.050 3.950 8 C -0.144 4.144 9 C 0.025 3.975 10 C -0.519 4.519 11 H 0.053 0.947 12 C 0.057 3.943 13 N -0.895 5.895 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.039 3.961 19 H 0.058 0.942 20 C -0.145 4.145 21 C 0.072 3.928 22 O -0.383 6.383 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.015 0.985 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.863 1.128 2.522 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.037 3.963 4 H 0.080 0.920 5 C -0.109 4.109 6 N -0.258 5.258 7 C -0.077 4.077 8 C -0.183 4.183 9 C -0.012 4.012 10 C -0.558 4.558 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.535 5.535 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.069 4.069 19 H 0.076 0.924 20 C -0.203 4.203 21 C -0.005 4.005 22 O -0.302 6.302 23 H 0.071 0.929 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.018 1.338 2.826 18.287 hybrid contribution 1.295 -0.784 -1.231 1.951 sum -16.723 0.554 1.595 16.808 Atomic orbital electron populations 1.21693 0.95289 1.01306 1.02143 1.21528 0.96584 0.94485 1.02889 1.22217 0.93319 0.93698 0.87092 0.91963 1.22794 0.95108 0.90640 1.02308 1.62583 1.13886 1.16388 1.32905 1.22375 0.84541 1.01575 0.99209 1.22214 1.00040 0.99008 0.97033 1.19018 0.88105 0.97105 0.97015 1.21290 0.91409 1.36214 1.06860 0.92881 1.25019 0.97603 0.95666 0.96131 1.69974 1.05417 1.45530 1.32558 0.86564 0.79521 0.79371 0.82737 1.19794 1.20968 1.20983 1.22303 0.95773 0.96583 0.92272 0.92423 1.21798 1.02512 0.94458 1.01498 1.22681 0.92663 0.83477 1.01727 1.87951 1.76683 1.26545 1.39015 0.92904 0.93010 0.92046 0.91095 0.90535 0.93247 0.90010 0.90585 0.91171 0.93486 0.93175 0.96623 0.96671 0.93066 0.91293 0.92365 0.92117 0.92775 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.81 37.16 0.36 -1.03 16 2 C -0.12 -1.26 5.65 -26.73 -0.15 -1.41 16 3 C 0.09 1.20 2.81 -26.68 -0.07 1.13 16 4 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 5 C 0.02 0.29 4.61 -3.71 -0.02 0.27 16 6 N -0.53 -8.19 4.75 -226.33 -1.07 -9.27 16 7 C 0.05 0.87 4.85 -3.83 -0.02 0.86 16 8 C -0.14 -3.01 4.44 -26.73 -0.12 -3.13 16 9 C 0.03 0.66 4.97 -27.88 -0.14 0.52 16 10 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 11 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 14 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C 0.04 0.57 2.05 -67.60 -0.14 0.43 16 19 H 0.06 0.96 6.40 -51.93 -0.33 0.63 16 20 C -0.15 -1.89 8.89 37.16 0.33 -1.56 16 21 C 0.07 0.91 6.29 37.21 0.23 1.14 16 22 O -0.38 -5.36 10.03 -35.23 -0.35 -5.71 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.64 7.83 -51.93 -0.41 0.23 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 29 H 0.08 1.11 8.12 -51.93 -0.42 0.69 16 30 H 0.08 1.32 6.40 -51.93 -0.33 0.99 16 31 H 0.07 1.23 8.11 -51.93 -0.42 0.80 16 32 H 0.05 1.00 6.61 -51.93 -0.34 0.65 16 33 H 0.05 1.05 6.42 -51.93 -0.33 0.72 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 1.02 6.43 -51.93 -0.33 0.68 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 316.38 15.07 4.77 4.77 Total: -1.00 -30.40 316.38 -8.54 -38.94 By element: Atomic # 1 Polarization: 4.71 SS G_CDS: -7.46 Total: -2.75 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -0.14 Total: -16.49 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.34 Total: -35.65 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.35 Total: -5.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.40 -8.54 -38.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.634 kcal (2) G-P(sol) polarization free energy of solvation -30.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds