Wall clock time and date at job start Sun Mar 29 2020 22:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.08997 * 109.50395 * 305.08470 * 3 2 1 5 5 C 1.53096 * 109.50458 * 185.00010 * 3 2 1 6 6 N 1.47023 * 109.25793 * 183.21557 * 5 3 2 7 7 C 1.46894 * 111.00001 * 182.39488 * 6 5 3 8 8 C 1.52997 * 109.47515 * 66.04707 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.47016 * 110.75003 * 58.61706 * 6 5 3 19 19 H 1.08994 * 109.50584 * 61.31618 * 18 6 5 20 20 C 1.52997 * 109.50408 * 181.45160 * 18 6 5 21 21 C 1.53103 * 109.25759 * 301.38500 * 18 6 5 22 22 O 1.43010 * 109.50661 * 65.21779 * 3 2 1 23 23 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47301 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.47384 * 59.99926 * 1 2 3 26 26 H 1.09000 * 109.47301 * 239.99974 * 2 1 3 27 27 H 1.09003 * 109.47384 * 120.00074 * 2 1 3 28 28 H 1.09002 * 109.50791 * 63.28713 * 5 3 2 29 29 H 1.08993 * 109.54508 * 303.16919 * 5 3 2 30 30 H 1.09002 * 109.47104 * 306.04439 * 7 6 5 31 31 H 1.08998 * 109.46828 * 186.05271 * 7 6 5 32 32 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47125 * 59.99961 * 20 18 6 38 38 H 1.09007 * 109.46903 * 179.97438 * 20 18 6 39 39 H 1.08998 * 109.47018 * 299.99758 * 20 18 6 40 40 H 1.09005 * 109.50485 * 296.91801 * 21 18 6 41 41 H 1.09001 * 109.50504 * 176.78587 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5657 1.4452 -0.1258 6 7 4.0562 2.8290 -0.0477 7 6 5.5140 2.8814 -0.2213 8 6 5.8742 2.4473 -1.6435 9 6 7.3926 2.5012 -1.8240 10 6 7.7473 2.0742 -3.2251 11 1 6.9678 1.7921 -3.9173 12 6 9.0670 2.0437 -3.6231 13 7 10.0162 2.3876 -2.7804 14 14 9.5068 1.5137 -5.3596 15 1 9.5242 2.7018 -6.2503 16 1 10.8481 0.8766 -5.3579 17 1 8.4976 0.5414 -5.8509 18 6 3.6539 3.4535 1.2209 19 1 4.0884 2.8996 2.0531 20 6 4.1471 4.9013 1.2566 21 6 2.1272 3.4306 1.3332 22 8 1.6664 2.0811 1.2239 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8528 1.0109 -1.0834 29 1 3.9994 0.8592 0.6844 30 1 5.9894 2.2110 0.4946 31 1 5.8635 3.8999 -0.0528 32 1 5.3987 3.1176 -2.3595 33 1 5.5246 1.4287 -1.8119 34 1 7.7425 3.5197 -1.6554 35 1 7.8676 1.8306 -1.1081 36 1 10.9446 2.3665 -3.0605 37 1 3.7104 5.4545 0.4252 38 1 3.8481 5.3639 2.1973 39 1 5.2338 4.9171 1.1728 40 1 1.6943 4.0290 0.5316 41 1 1.8270 3.8407 2.2975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403968646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:37 Heat of formation + Delta-G solvation = -66.734637 kcal Electronic energy + Delta-G solvation = -17961.759527 eV Core-core repulsion = 15261.758870 eV Total energy + Delta-G solvation = -2700.000657 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.85054 -36.44665 -34.36732 -33.55336 -31.92523 -30.83148 -27.99691 -26.75663 -25.41041 -23.23932 -22.58981 -21.07258 -20.07875 -19.79858 -16.64733 -16.40815 -15.99286 -15.32318 -14.84752 -14.56127 -14.35297 -14.03079 -13.65371 -13.62493 -13.23191 -12.55042 -12.36271 -12.17756 -11.80100 -11.68954 -11.59327 -11.29695 -11.11737 -11.03754 -10.96931 -10.79094 -10.56482 -10.44030 -10.26532 -9.59417 -9.52802 -9.26970 -9.02319 -8.33392 -8.11256 -5.98667 -4.00729 3.32857 3.38895 3.42415 3.74224 3.96779 4.47580 4.72726 4.85340 4.96386 5.09614 5.11338 5.24717 5.30655 5.37203 5.48009 5.54853 5.56676 5.65240 5.76045 5.79598 5.87121 5.88651 5.90966 5.99102 6.04004 6.07710 6.23118 6.24758 6.38209 6.69151 6.78009 7.10520 7.17854 7.33658 7.35369 7.69321 7.84197 8.01642 8.45035 9.06388 9.63243 11.12819 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.004863 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.662524 B = 5756.249010 C = 6556.895460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C 0.094 3.906 4 H 0.066 0.934 5 C 0.022 3.978 6 N -0.533 5.533 7 C 0.051 3.949 8 C -0.104 4.104 9 C 0.022 3.978 10 C -0.518 4.518 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.892 3.108 15 H -0.280 1.280 16 H -0.287 1.287 17 H -0.274 1.274 18 C 0.042 3.958 19 H 0.044 0.956 20 C -0.147 4.147 21 C 0.072 3.928 22 O -0.384 6.384 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.260 0.740 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.606 0.047 8.388 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.084 0.916 5 C -0.106 4.106 6 N -0.258 5.258 7 C -0.075 4.075 8 C -0.142 4.142 9 C -0.016 4.016 10 C -0.556 4.556 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.067 4.067 19 H 0.062 0.938 20 C -0.204 4.204 21 C -0.005 4.005 22 O -0.303 6.303 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.070 0.930 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.736 0.241 8.169 18.624 hybrid contribution 1.056 -0.577 -0.460 1.288 sum -15.680 -0.336 7.709 17.476 Atomic orbital electron populations 1.21692 0.95247 1.01328 1.02179 1.21529 0.96639 0.94404 1.02873 1.22229 0.93318 0.93792 0.87082 0.91640 1.22834 0.95091 0.90093 1.02589 1.62337 1.14418 1.16730 1.32318 1.22403 0.84689 1.01324 0.99110 1.21647 0.99917 0.99658 0.92963 1.19071 0.88638 0.97119 0.96739 1.21245 0.92027 1.44620 0.97736 0.92704 1.25024 0.96622 0.95501 0.97328 1.69964 0.99997 1.48729 1.34934 0.86602 0.77704 0.78805 0.84944 1.20652 1.21257 1.19887 1.22280 0.96306 0.96461 0.91614 0.93766 1.21840 1.02180 0.94599 1.01788 1.22664 0.92388 0.83680 1.01816 1.87927 1.76759 1.26443 1.39169 0.92888 0.92112 0.92890 0.90342 0.91285 0.88960 0.94351 0.95401 0.90507 0.92614 0.93572 0.96628 0.96861 0.93045 0.91603 0.92345 0.91578 0.92474 0.88943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.81 37.15 0.36 -1.04 16 2 C -0.12 -1.25 5.64 -26.73 -0.15 -1.40 16 3 C 0.09 1.20 2.80 -26.68 -0.07 1.12 16 4 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.02 0.32 4.72 -3.71 -0.02 0.31 16 6 N -0.53 -8.30 4.54 -226.34 -1.03 -9.32 16 7 C 0.05 0.92 4.73 -3.83 -0.02 0.90 16 8 C -0.10 -2.19 5.08 -26.73 -0.14 -2.33 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 11 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 18 C 0.04 0.56 2.59 -67.60 -0.17 0.39 16 19 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 20 C -0.15 -1.73 8.92 37.16 0.33 -1.39 16 21 C 0.07 0.85 6.29 37.21 0.23 1.09 16 22 O -0.38 -5.13 10.02 -35.23 -0.35 -5.48 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.62 7.83 -51.93 -0.41 0.21 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.09 1.40 6.37 -51.93 -0.33 1.07 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 31 H 0.08 1.35 5.77 -51.93 -0.30 1.05 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.85 6.17 -51.93 -0.32 0.52 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -30.40 319.64 -8.62 -39.02 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -7.58 Total: -3.81 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: -0.19 Total: -15.56 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: -0.29 Total: -35.79 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.35 Total: -5.48 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.40 -8.62 -39.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.717 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds