Wall clock time and date at job start Sun Mar 29 2020 22:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.08997 * 109.50395 * 305.08470 * 3 2 1 5 5 C 1.53096 * 109.50458 * 185.00010 * 3 2 1 6 6 N 1.47023 * 109.25793 * 183.21557 * 5 3 2 7 7 C 1.46894 * 111.00001 * 182.39488 * 6 5 3 8 8 C 1.52997 * 109.47515 * 66.04707 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46735 * 180.02562 * 9 8 7 11 11 H 1.07996 * 119.99928 * 359.97438 * 10 9 8 12 12 C 1.37880 * 119.99611 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00327 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99743 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46828 * 90.00241 * 14 12 10 16 16 H 1.48494 * 109.47178 * 209.99936 * 14 12 10 17 17 H 1.48500 * 109.47075 * 330.00183 * 14 12 10 18 18 C 1.47016 * 110.75003 * 58.61706 * 6 5 3 19 19 H 1.08994 * 109.50584 * 61.31618 * 18 6 5 20 20 C 1.52997 * 109.50408 * 181.45160 * 18 6 5 21 21 C 1.53103 * 109.25759 * 301.38500 * 18 6 5 22 22 O 1.43010 * 109.50661 * 65.21779 * 3 2 1 23 23 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47301 * 300.00026 * 1 2 3 25 25 H 1.09003 * 109.47384 * 59.99926 * 1 2 3 26 26 H 1.09000 * 109.47301 * 239.99974 * 2 1 3 27 27 H 1.09003 * 109.47384 * 120.00074 * 2 1 3 28 28 H 1.09002 * 109.50791 * 63.28713 * 5 3 2 29 29 H 1.08993 * 109.54508 * 303.16919 * 5 3 2 30 30 H 1.09002 * 109.47104 * 306.04439 * 7 6 5 31 31 H 1.08998 * 109.46828 * 186.05271 * 7 6 5 32 32 H 1.09002 * 109.47153 * 59.99762 * 8 7 6 33 33 H 1.09001 * 109.46832 * 299.99953 * 8 7 6 34 34 H 1.09001 * 109.47194 * 299.99650 * 9 8 7 35 35 H 1.08992 * 109.47399 * 59.99823 * 9 8 7 36 36 H 0.97000 * 120.00354 * 180.02562 * 13 12 10 37 37 H 1.08997 * 109.47125 * 59.99961 * 20 18 6 38 38 H 1.09007 * 109.46903 * 179.97438 * 20 18 6 39 39 H 1.08998 * 109.47018 * 299.99758 * 20 18 6 40 40 H 1.09005 * 109.50485 * 296.91801 * 21 18 6 41 41 H 1.09001 * 109.50504 * 176.78587 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5657 1.4452 -0.1258 6 7 4.0562 2.8290 -0.0477 7 6 5.5140 2.8814 -0.2213 8 6 5.8742 2.4473 -1.6435 9 6 7.3926 2.5012 -1.8240 10 6 7.7473 2.0742 -3.2251 11 1 6.9678 1.7921 -3.9173 12 6 9.0670 2.0437 -3.6231 13 7 10.0162 2.3876 -2.7804 14 14 9.5068 1.5137 -5.3596 15 1 9.5242 2.7018 -6.2503 16 1 10.8481 0.8766 -5.3579 17 1 8.4976 0.5414 -5.8509 18 6 3.6539 3.4535 1.2209 19 1 4.0884 2.8996 2.0531 20 6 4.1471 4.9013 1.2566 21 6 2.1272 3.4306 1.3332 22 8 1.6664 2.0811 1.2239 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.8528 1.0109 -1.0834 29 1 3.9994 0.8592 0.6844 30 1 5.9894 2.2110 0.4946 31 1 5.8635 3.8999 -0.0528 32 1 5.3987 3.1176 -2.3595 33 1 5.5246 1.4287 -1.8119 34 1 7.7425 3.5197 -1.6554 35 1 7.8676 1.8306 -1.1081 36 1 10.9446 2.3665 -3.0605 37 1 3.7104 5.4545 0.4252 38 1 3.8481 5.3639 2.1973 39 1 5.2338 4.9171 1.1728 40 1 1.6943 4.0290 0.5316 41 1 1.8270 3.8407 2.2975 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403968646.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:37 Heat of formation + Delta-G solvation = -85.626184 kcal Electronic energy + Delta-G solvation = -17962.578726 eV Core-core repulsion = 15261.758870 eV Total energy + Delta-G solvation = -2700.819856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.95157 -37.70590 -35.76912 -35.06798 -33.52511 -32.16236 -29.46216 -27.86458 -26.97614 -24.42708 -24.12699 -22.14197 -21.68760 -21.03224 -18.48918 -17.67595 -17.24062 -16.58198 -16.45453 -16.00152 -15.53846 -15.31983 -15.04343 -14.62961 -14.26565 -14.20354 -13.72386 -13.59815 -13.15684 -13.07460 -12.73717 -12.66413 -12.56613 -12.44686 -12.24384 -12.03527 -11.97212 -11.82813 -11.45642 -11.38777 -11.26709 -11.12023 -10.56183 -10.47009 -9.38767 -8.20926 -6.32132 1.39695 1.41193 1.52339 2.40190 2.71406 2.83948 3.12297 3.70526 3.84928 3.91680 4.09120 4.12137 4.20273 4.28363 4.37241 4.39996 4.58449 4.61474 4.62375 4.70513 4.75701 4.80605 4.85923 4.90475 4.98362 5.02370 5.12103 5.13664 5.19867 5.23512 5.34093 5.45217 5.50368 5.70976 5.83857 5.98025 6.04992 6.23107 6.25528 6.84304 7.37236 8.91106 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027975 B = 0.004863 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.662524 B = 5756.249010 C = 6556.895460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.065 0.935 5 C 0.021 3.979 6 N -0.537 5.537 7 C 0.064 3.936 8 C -0.088 4.088 9 C 0.026 3.974 10 C -0.542 4.542 11 H 0.059 0.941 12 C 0.000 4.000 13 N -0.934 5.934 14 Si 0.965 3.035 15 H -0.271 1.271 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.040 3.960 19 H 0.036 0.964 20 C -0.143 4.143 21 C 0.072 3.928 22 O -0.392 6.392 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.018 0.982 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.048 0.952 34 H -0.007 1.007 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -0.064 7.922 19.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.083 0.917 5 C -0.107 4.107 6 N -0.262 5.262 7 C -0.064 4.064 8 C -0.126 4.126 9 C -0.011 4.011 10 C -0.580 4.580 11 H 0.077 0.923 12 C -0.198 4.198 13 N -0.574 5.574 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.207 1.207 17 H -0.187 1.187 18 C -0.069 4.069 19 H 0.054 0.946 20 C -0.200 4.200 21 C -0.004 4.004 22 O -0.311 6.311 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.102 0.898 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.011 0.989 35 H 0.006 0.994 36 H 0.073 0.927 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -18.243 0.132 7.712 19.806 hybrid contribution 1.523 -0.522 -0.264 1.632 sum -16.720 -0.390 7.448 18.308 Atomic orbital electron populations 1.21655 0.94077 1.02237 1.02016 1.21554 0.97611 0.93039 1.03132 1.22233 0.91634 0.95050 0.87017 0.91696 1.22884 0.96672 0.89416 1.01774 1.62313 1.12356 1.17465 1.34069 1.22123 0.86623 1.01010 0.96625 1.21380 0.96185 0.99883 0.95103 1.18963 0.91910 0.94876 0.95370 1.21669 0.92615 1.44915 0.98828 0.92280 1.25984 0.96481 0.95283 1.02030 1.70095 1.00492 1.49578 1.37261 0.85442 0.77623 0.78748 0.79213 1.19676 1.20680 1.18739 1.22421 0.97584 0.96943 0.89945 0.94582 1.21819 1.01125 0.93726 1.03316 1.22805 0.90920 0.83236 1.03488 1.87928 1.76717 1.27188 1.39313 0.91482 0.92778 0.92502 0.89561 0.91589 0.89808 0.95175 0.96377 0.90320 0.92817 0.93339 0.98898 0.99353 0.92749 0.91607 0.89605 0.93056 0.92030 0.86310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.81 71.98 0.71 -1.73 16 2 C -0.12 -2.32 5.64 30.59 0.17 -2.15 16 3 C 0.10 2.40 2.80 30.63 0.09 2.48 16 4 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 5 C 0.02 0.60 4.72 86.31 0.41 1.01 16 6 N -0.54 -16.46 4.54 -870.01 -3.95 -20.41 16 7 C 0.06 2.30 4.73 86.30 0.41 2.71 16 8 C -0.09 -3.75 5.08 30.59 0.16 -3.60 16 9 C 0.03 1.43 4.97 29.85 0.15 1.58 16 10 C -0.54 -31.49 9.11 25.60 0.23 -31.25 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 13 N -0.93 -57.54 13.29 21.45 0.28 -57.25 16 14 Si 0.97 44.68 29.54 68.60 2.03 46.71 16 15 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 18 C 0.04 1.00 2.59 44.93 0.12 1.12 16 19 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 20 C -0.14 -3.14 8.92 71.98 0.64 -2.50 16 21 C 0.07 1.56 6.29 72.02 0.45 2.01 16 22 O -0.39 -9.79 10.02 -148.98 -1.49 -11.28 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.00 7.83 -2.39 -0.02 0.98 16 25 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.08 2.53 6.37 -2.39 -0.02 2.51 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.02 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.08 2.81 5.77 -2.39 -0.01 2.80 16 32 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.05 2.03 6.51 -2.39 -0.02 2.02 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H -0.01 -0.70 8.14 -2.39 -0.02 -0.71 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.05 1.28 6.17 -2.39 -0.01 1.27 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 41 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -64.95 319.64 1.82 -63.13 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: 0.96 Total: 8.98 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.99 Total: -29.87 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.66 Total: -77.66 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: -1.49 Total: -11.28 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -64.95 1.82 -63.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968646.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.500 kcal (2) G-P(sol) polarization free energy of solvation -64.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds