Wall clock time and date at job start Sun Mar 29 2020 22:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.47378 * 2 1 4 4 H 1.09000 * 109.50521 * 55.08008 * 3 2 1 5 5 C 1.53098 * 109.50847 * 175.21631 * 3 2 1 6 6 N 1.47015 * 109.25500 * 176.78015 * 5 3 2 7 7 C 1.46901 * 110.99579 * 177.60168 * 6 5 3 8 8 C 1.52992 * 109.47859 * 293.63906 * 7 6 5 9 9 C 1.52997 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00129 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99861 * 179.97438 * 10 9 8 13 13 N 1.31510 * 119.99913 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 119.99734 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47432 * 0.02562 * 14 12 10 16 16 H 1.48506 * 109.46890 * 120.00210 * 14 12 10 17 17 H 1.48501 * 109.47062 * 240.00257 * 14 12 10 18 18 C 1.47003 * 110.75418 * 301.38234 * 6 5 3 19 19 H 1.09006 * 109.50841 * 178.55278 * 18 6 5 20 20 C 1.53002 * 109.50915 * 298.68183 * 18 6 5 21 21 C 1.53099 * 109.26063 * 58.61881 * 18 6 5 22 22 O 1.43016 * 109.50044 * 294.99874 * 3 2 1 23 23 H 1.09001 * 109.47185 * 300.00031 * 1 2 3 24 24 H 1.08998 * 109.46929 * 60.00365 * 1 2 3 25 25 H 1.08995 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47293 * 239.99164 * 2 1 3 27 27 H 1.09006 * 109.47198 * 119.99530 * 2 1 3 28 28 H 1.08999 * 109.50415 * 56.84750 * 5 3 2 29 29 H 1.08998 * 109.50461 * 296.71532 * 5 3 2 30 30 H 1.09002 * 109.46980 * 173.63565 * 7 6 5 31 31 H 1.09001 * 109.46628 * 53.63987 * 7 6 5 32 32 H 1.09002 * 109.47103 * 59.99734 * 8 7 6 33 33 H 1.08998 * 109.46862 * 300.00546 * 8 7 6 34 34 H 1.09002 * 109.47153 * 59.99783 * 9 8 7 35 35 H 1.09001 * 109.46832 * 299.99974 * 9 8 7 36 36 H 0.97002 * 119.99768 * 179.97438 * 13 12 10 37 37 H 1.09000 * 109.46937 * 60.00272 * 20 18 6 38 38 H 1.08997 * 109.47131 * 179.97438 * 20 18 6 39 39 H 1.08994 * 109.47026 * 300.00326 * 20 18 6 40 40 H 1.09007 * 109.50415 * 63.08123 * 21 18 6 41 41 H 1.08998 * 109.51248 * 183.21757 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6069 1.9817 0.8425 5 6 3.5663 1.4451 0.1203 6 7 4.0564 2.8290 0.0422 7 6 5.5148 2.8811 0.2108 8 6 5.8795 2.4529 1.6335 9 6 7.3985 2.5066 1.8088 10 6 7.7577 2.0854 3.2104 11 1 6.9803 1.8067 3.9065 12 6 9.0788 2.0547 3.6039 13 7 10.0253 2.3935 2.7561 14 14 9.5240 1.5318 5.3410 15 1 8.2857 1.2024 6.0916 16 1 10.4030 0.3361 5.2881 17 1 10.2372 2.6408 6.0242 18 6 3.6496 3.4549 -1.2242 19 1 4.0009 4.4865 -1.2497 20 6 4.2554 2.6789 -2.3955 21 6 2.1225 3.4322 -1.3311 22 8 1.6621 2.0825 -1.2218 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8898 27 1 1.8933 -0.5138 0.8901 28 1 3.9964 0.8602 -0.6926 29 1 3.8567 1.0095 1.0764 30 1 5.8645 3.8988 0.0367 31 1 5.9874 2.2073 -0.5039 32 1 5.5299 1.4352 1.8075 33 1 5.4068 3.1266 2.3481 34 1 7.7486 3.5241 1.6346 35 1 7.8707 1.8326 1.0941 36 1 10.9548 2.3723 3.0330 37 1 3.9018 1.6482 -2.3700 38 1 3.9530 3.1433 -3.3341 39 1 5.3424 2.6922 -2.3167 40 1 1.6925 4.0297 -0.5272 41 1 1.8188 3.8435 -2.2938 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403968647.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:39 Heat of formation + Delta-G solvation = -66.203960 kcal Electronic energy + Delta-G solvation = -18069.799112 eV Core-core repulsion = 15369.821467 eV Total energy + Delta-G solvation = -2699.977645 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.03653 -36.39747 -34.30588 -33.56765 -31.79190 -30.47990 -28.12230 -26.74250 -25.44260 -23.85753 -22.60680 -21.21614 -19.97976 -19.09932 -16.60876 -16.49095 -16.08235 -15.15297 -14.98009 -14.79245 -14.43120 -13.81632 -13.64001 -13.50974 -13.15139 -12.65354 -12.33344 -12.08097 -12.04327 -11.69420 -11.57211 -11.31938 -11.08369 -11.04581 -10.95666 -10.75524 -10.54851 -10.43584 -10.24754 -9.61479 -9.54059 -9.27418 -9.00783 -8.33720 -8.06380 -5.98842 -4.00773 3.31754 3.39131 3.43607 3.75480 4.01480 4.47671 4.75786 4.87526 4.98393 5.07452 5.11202 5.26120 5.32654 5.37181 5.47000 5.51232 5.59383 5.70183 5.71523 5.74720 5.86290 5.88008 5.93796 5.96781 6.05603 6.08189 6.24032 6.30356 6.34573 6.69770 6.77049 7.11019 7.20183 7.33685 7.35465 7.69640 7.84265 8.01664 8.45111 9.06621 9.63270 11.12691 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.030924 B = 0.004782 C = 0.004303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.226374 B = 5853.873630 C = 6505.141430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.065 0.935 5 C 0.019 3.981 6 N -0.531 5.531 7 C 0.056 3.944 8 C -0.104 4.104 9 C 0.022 3.978 10 C -0.517 4.517 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.897 5.897 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.041 3.959 19 H 0.089 0.911 20 C -0.181 4.181 21 C 0.072 3.928 22 O -0.381 6.381 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.046 0.954 33 H 0.055 0.945 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.664 -0.885 -8.786 18.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.083 0.917 5 C -0.109 4.109 6 N -0.255 5.255 7 C -0.071 4.071 8 C -0.142 4.142 9 C -0.016 4.016 10 C -0.556 4.556 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.536 5.536 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.211 1.211 17 H -0.210 1.210 18 C -0.068 4.068 19 H 0.107 0.893 20 C -0.240 4.240 21 C -0.006 4.006 22 O -0.300 6.300 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.034 0.966 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.798 -0.688 -8.551 18.862 hybrid contribution 1.086 -0.527 0.435 1.283 sum -15.712 -1.215 -8.116 17.726 Atomic orbital electron populations 1.21689 0.95265 1.01299 1.02175 1.21526 0.96620 0.94462 1.02818 1.22215 0.93291 0.93715 0.87165 0.91737 1.22845 0.95107 0.90423 1.02564 1.62506 1.14282 1.16909 1.31775 1.22317 0.84742 1.00963 0.99092 1.21651 0.99892 0.99698 0.93001 1.19076 0.88641 0.97125 0.96760 1.21285 0.92015 1.44622 0.97628 0.92648 1.25028 0.96649 0.95507 0.97332 1.69977 0.99994 1.48849 1.34796 0.86549 0.78445 0.78225 0.84868 1.19725 1.21057 1.21010 1.22386 0.96121 0.99469 0.88841 0.89299 1.22354 1.01330 1.01666 0.98616 1.22617 0.92413 0.83815 1.01707 1.87923 1.76540 1.26286 1.39240 0.92907 0.92102 0.92928 0.91330 0.90399 0.93865 0.89169 0.91213 0.94986 0.93544 0.92640 0.96623 0.96860 0.93107 0.91931 0.92423 0.92258 0.92596 0.88934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.81 37.16 0.36 -1.02 16 2 C -0.12 -1.23 5.65 -26.73 -0.15 -1.38 16 3 C 0.09 1.18 2.81 -26.68 -0.07 1.10 16 4 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 5 C 0.02 0.27 4.33 -3.71 -0.02 0.25 16 6 N -0.53 -8.12 4.68 -226.35 -1.06 -9.18 16 7 C 0.06 0.99 4.32 -3.83 -0.02 0.97 16 8 C -0.10 -2.20 5.09 -26.74 -0.14 -2.33 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 11 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 13 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 14 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 C 0.04 0.53 2.97 -67.60 -0.20 0.33 16 19 H 0.09 1.10 8.09 -51.93 -0.42 0.68 16 20 C -0.18 -2.26 8.39 37.16 0.31 -1.94 16 21 C 0.07 0.83 6.41 37.21 0.24 1.06 16 22 O -0.38 -4.90 9.46 -35.23 -0.33 -5.24 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.64 6.39 -51.93 -0.33 0.30 16 29 H 0.09 1.36 6.38 -51.93 -0.33 1.03 16 30 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 31 H 0.03 0.58 6.89 -51.93 -0.36 0.22 16 32 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.06 0.83 6.07 -51.93 -0.31 0.52 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.79 6.69 -51.93 -0.35 0.45 16 40 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -30.25 316.10 -8.60 -38.85 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -7.46 Total: -3.37 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.23 Total: -16.17 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.32 Total: -35.66 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.33 Total: -5.24 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.25 -8.60 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968647.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.358 kcal (2) G-P(sol) polarization free energy of solvation -30.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds