Wall clock time and date at job start Sun Mar 29 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 H 1.09006 * 109.53855 * 304.89294 * 3 2 1 5 5 C 1.53099 * 109.50556 * 184.78549 * 3 2 1 6 6 N 1.47018 * 109.25222 * 183.21297 * 5 3 2 7 7 C 1.46905 * 110.99643 * 182.38804 * 6 5 3 8 8 C 1.53000 * 109.47008 * 66.36781 * 7 6 5 9 9 C 1.53002 * 109.47416 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47323 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00100 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00390 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99829 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47196 * 90.00279 * 14 12 10 16 16 H 1.48508 * 109.47154 * 209.99751 * 14 12 10 17 17 H 1.48497 * 109.47354 * 329.99912 * 14 12 10 18 18 C 1.47015 * 110.75219 * 58.61953 * 6 5 3 19 19 H 1.08998 * 109.54068 * 181.42795 * 18 6 5 20 20 C 1.52992 * 109.50843 * 61.31313 * 18 6 5 21 21 C 1.53094 * 109.25487 * 301.37500 * 18 6 5 22 22 O 1.43010 * 109.50953 * 64.99668 * 3 2 1 23 23 H 1.08993 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46503 * 300.00199 * 1 2 3 25 25 H 1.08999 * 109.46717 * 59.99917 * 1 2 3 26 26 H 1.08999 * 109.46960 * 239.99530 * 2 1 3 27 27 H 1.08999 * 109.46717 * 120.00083 * 2 1 3 28 28 H 1.08998 * 109.51056 * 63.28228 * 5 3 2 29 29 H 1.08995 * 109.50606 * 303.14598 * 5 3 2 30 30 H 1.08996 * 109.46924 * 186.36394 * 7 6 5 31 31 H 1.09001 * 109.47455 * 306.37165 * 7 6 5 32 32 H 1.09007 * 109.47499 * 300.00071 * 8 7 6 33 33 H 1.09001 * 109.47389 * 59.99625 * 8 7 6 34 34 H 1.08996 * 109.46871 * 299.99830 * 9 8 7 35 35 H 1.08997 * 109.46458 * 60.00052 * 9 8 7 36 36 H 0.96997 * 120.00167 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47096 * 300.21754 * 20 18 6 38 38 H 1.09003 * 109.47300 * 60.22136 * 20 18 6 39 39 H 1.08999 * 109.47222 * 180.21594 * 20 18 6 40 40 H 1.09000 * 109.51209 * 296.91899 * 21 18 6 41 41 H 1.08997 * 109.54294 * 176.80459 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6076 1.9821 -0.8426 5 6 3.5664 1.4449 -0.1204 6 7 4.0565 2.8288 -0.0424 7 6 5.5149 2.8810 -0.2108 8 6 5.8797 2.4526 -1.6336 9 6 7.3986 2.5074 -1.8092 10 6 7.7579 2.0849 -3.2105 11 1 6.9805 1.8055 -3.9063 12 6 9.0788 2.0549 -3.6041 13 7 9.3924 1.6857 -4.8268 14 14 10.4232 2.5387 -2.4008 15 1 10.8764 1.3369 -1.6555 16 1 11.5687 3.1201 -3.1459 17 1 9.8934 3.5437 -1.4445 18 6 3.6497 3.4549 1.2241 19 1 4.0011 4.4864 1.2502 20 6 4.2554 2.6790 2.3953 21 6 2.1227 3.4322 1.3309 22 8 1.6622 2.0827 1.2217 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8568 1.0093 -1.0764 29 1 3.9965 0.8601 0.6926 30 1 5.8646 3.8986 -0.0369 31 1 5.9876 2.2072 0.5039 32 1 5.5300 1.4349 -1.8076 33 1 5.4071 3.1263 -2.3483 34 1 7.7478 3.5252 -1.6355 35 1 7.8714 1.8339 -1.0945 36 1 10.3218 1.6649 -5.1038 37 1 3.9049 1.6473 2.3677 38 1 5.3426 2.6956 2.3187 39 1 3.9504 3.1414 3.3340 40 1 1.6926 4.0297 0.5270 41 1 1.8184 3.8438 2.2931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403968648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:41 Heat of formation + Delta-G solvation = -62.441972 kcal Electronic energy + Delta-G solvation = -18116.038351 eV Core-core repulsion = 15416.223838 eV Total energy + Delta-G solvation = -2699.814513 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.09559 -36.48027 -34.35838 -33.60372 -31.88964 -30.64632 -28.37787 -26.86601 -25.64483 -23.90453 -22.41629 -21.18031 -19.98389 -19.16896 -16.77383 -16.53133 -16.41924 -15.20669 -15.07708 -14.83226 -14.28223 -13.85446 -13.63510 -13.59509 -13.23051 -12.71190 -12.61846 -12.18265 -12.13332 -11.84301 -11.73428 -11.42205 -11.19070 -11.11325 -10.99873 -10.88492 -10.59969 -10.32350 -9.92520 -9.75021 -9.65365 -9.38196 -9.14399 -8.52614 -8.14407 -6.02978 -4.00693 3.30780 3.38214 3.41962 3.71604 3.93898 4.46101 4.71537 4.81900 4.94067 5.01749 5.08144 5.21565 5.28520 5.31178 5.42152 5.46250 5.53857 5.62194 5.65213 5.70684 5.79049 5.83921 5.87438 5.88750 6.00009 6.03694 6.17119 6.22249 6.25805 6.53862 6.57353 6.90427 7.14158 7.21409 7.23951 7.36139 7.46602 7.81492 8.56241 9.02440 9.59757 11.10641 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.005000 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.208897 B = 5598.349709 C = 6181.009835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.094 3.906 4 H 0.066 0.934 5 C 0.018 3.982 6 N -0.530 5.530 7 C 0.053 3.947 8 C -0.097 4.097 9 C -0.013 4.013 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.905 5.905 14 Si 0.880 3.120 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.266 1.266 18 C 0.041 3.959 19 H 0.089 0.911 20 C -0.181 4.181 21 C 0.072 3.928 22 O -0.381 6.381 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.043 0.957 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.015 0.985 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.376 0.838 13.855 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C 0.036 3.964 4 H 0.084 0.916 5 C -0.110 4.110 6 N -0.254 5.254 7 C -0.074 4.074 8 C -0.135 4.135 9 C -0.051 4.051 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.544 5.544 14 Si 0.707 3.293 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.191 1.191 18 C -0.068 4.068 19 H 0.107 0.893 20 C -0.240 4.240 21 C -0.006 4.006 22 O -0.300 6.300 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.026 0.974 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -15.545 0.992 13.484 20.602 hybrid contribution 1.522 -0.061 0.989 1.816 sum -14.023 0.931 14.473 20.173 Atomic orbital electron populations 1.21691 0.95229 1.01339 1.02184 1.21528 0.96668 0.94390 1.02846 1.22217 0.93200 0.93790 0.87179 0.91647 1.22865 0.95242 0.90253 1.02645 1.62485 1.13954 1.17064 1.31863 1.22343 0.85180 1.00905 0.98972 1.21478 0.98377 1.00488 0.93178 1.19549 0.91640 0.96385 0.97512 1.21141 0.93427 1.44813 0.96212 0.91044 1.25032 0.98720 0.94739 0.95046 1.69916 1.18296 1.48572 1.17607 0.86776 0.81637 0.79279 0.81560 1.20379 1.21390 1.19067 1.22389 0.96256 0.99427 0.88748 0.89294 1.22356 1.01178 1.01758 0.98676 1.22609 0.92298 0.83880 1.01767 1.87925 1.76535 1.26240 1.39266 0.92895 0.92127 0.92861 0.90324 0.91351 0.89033 0.93843 0.91206 0.95011 0.92931 0.91996 0.96661 0.97355 0.92779 0.91861 0.92396 0.92373 0.92539 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.81 37.16 0.36 -1.00 16 2 C -0.12 -1.21 5.65 -26.73 -0.15 -1.36 16 3 C 0.09 1.15 2.80 -26.68 -0.07 1.07 16 4 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 5 C 0.02 0.25 4.33 -3.71 -0.02 0.23 16 6 N -0.53 -7.75 4.68 -226.34 -1.06 -8.81 16 7 C 0.05 0.88 4.32 -3.82 -0.02 0.86 16 8 C -0.10 -1.96 5.09 -26.73 -0.14 -2.09 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -14.97 9.66 -34.44 -0.33 -15.30 16 11 H 0.07 2.22 7.99 -52.48 -0.42 1.80 16 12 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 13 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 14 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 15 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 18 C 0.04 0.50 2.97 -67.60 -0.20 0.30 16 19 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16 20 C -0.18 -2.12 8.39 37.15 0.31 -1.81 16 21 C 0.07 0.79 6.41 37.21 0.24 1.03 16 22 O -0.38 -4.76 9.46 -35.23 -0.33 -5.09 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.60 7.82 -51.93 -0.41 0.19 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.09 1.34 6.38 -51.93 -0.33 1.01 16 29 H 0.04 0.61 6.38 -51.93 -0.33 0.28 16 30 H 0.07 1.13 8.04 -51.93 -0.42 0.72 16 31 H 0.03 0.53 6.90 -51.93 -0.36 0.17 16 32 H 0.05 1.05 6.52 -51.93 -0.34 0.72 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 35 H 0.01 0.20 7.57 -51.93 -0.39 -0.20 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.06 0.80 6.06 -51.93 -0.31 0.49 16 38 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 312.50 15.07 4.71 4.71 Total: -1.00 -30.69 312.50 -8.23 -38.92 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: -7.42 Total: -2.91 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.22 Total: -16.66 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: -0.29 Total: -36.25 kcal Atomic # 8 Polarization: -4.76 SS G_CDS: -0.33 Total: -5.09 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.69 -8.23 -38.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.523 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds