Wall clock time and date at job start Sun Mar 29 2020 22:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47453 * 2 1 4 4 H 1.09006 * 109.53855 * 304.89294 * 3 2 1 5 5 C 1.53099 * 109.50556 * 184.78549 * 3 2 1 6 6 N 1.47018 * 109.25222 * 183.21297 * 5 3 2 7 7 C 1.46905 * 110.99643 * 182.38804 * 6 5 3 8 8 C 1.53000 * 109.47008 * 66.36781 * 7 6 5 9 9 C 1.53002 * 109.47416 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47323 * 179.97438 * 9 8 7 11 11 H 1.08009 * 119.99701 * 0.02562 * 10 9 8 12 12 C 1.37868 * 120.00100 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00390 * 179.97438 * 12 10 9 14 14 Si 1.86800 * 119.99829 * 359.97438 * 12 10 9 15 15 H 1.48504 * 109.47196 * 90.00279 * 14 12 10 16 16 H 1.48508 * 109.47154 * 209.99751 * 14 12 10 17 17 H 1.48497 * 109.47354 * 329.99912 * 14 12 10 18 18 C 1.47015 * 110.75219 * 58.61953 * 6 5 3 19 19 H 1.08998 * 109.54068 * 181.42795 * 18 6 5 20 20 C 1.52992 * 109.50843 * 61.31313 * 18 6 5 21 21 C 1.53094 * 109.25487 * 301.37500 * 18 6 5 22 22 O 1.43010 * 109.50953 * 64.99668 * 3 2 1 23 23 H 1.08993 * 109.47273 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46503 * 300.00199 * 1 2 3 25 25 H 1.08999 * 109.46717 * 59.99917 * 1 2 3 26 26 H 1.08999 * 109.46960 * 239.99530 * 2 1 3 27 27 H 1.08999 * 109.46717 * 120.00083 * 2 1 3 28 28 H 1.08998 * 109.51056 * 63.28228 * 5 3 2 29 29 H 1.08995 * 109.50606 * 303.14598 * 5 3 2 30 30 H 1.08996 * 109.46924 * 186.36394 * 7 6 5 31 31 H 1.09001 * 109.47455 * 306.37165 * 7 6 5 32 32 H 1.09007 * 109.47499 * 300.00071 * 8 7 6 33 33 H 1.09001 * 109.47389 * 59.99625 * 8 7 6 34 34 H 1.08996 * 109.46871 * 299.99830 * 9 8 7 35 35 H 1.08997 * 109.46458 * 60.00052 * 9 8 7 36 36 H 0.96997 * 120.00167 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.47096 * 300.21754 * 20 18 6 38 38 H 1.09003 * 109.47300 * 60.22136 * 20 18 6 39 39 H 1.08999 * 109.47222 * 180.21594 * 20 18 6 40 40 H 1.09000 * 109.51209 * 296.91899 * 21 18 6 41 41 H 1.08997 * 109.54294 * 176.80459 * 21 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6076 1.9821 -0.8426 5 6 3.5664 1.4449 -0.1204 6 7 4.0565 2.8288 -0.0424 7 6 5.5149 2.8810 -0.2108 8 6 5.8797 2.4526 -1.6336 9 6 7.3986 2.5074 -1.8092 10 6 7.7579 2.0849 -3.2105 11 1 6.9805 1.8055 -3.9063 12 6 9.0788 2.0549 -3.6041 13 7 9.3924 1.6857 -4.8268 14 14 10.4232 2.5387 -2.4008 15 1 10.8764 1.3369 -1.6555 16 1 11.5687 3.1201 -3.1459 17 1 9.8934 3.5437 -1.4445 18 6 3.6497 3.4549 1.2241 19 1 4.0011 4.4864 1.2502 20 6 4.2554 2.6790 2.3953 21 6 2.1227 3.4322 1.3309 22 8 1.6622 2.0827 1.2217 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3632 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8568 1.0093 -1.0764 29 1 3.9965 0.8601 0.6926 30 1 5.8646 3.8986 -0.0369 31 1 5.9876 2.2072 0.5039 32 1 5.5300 1.4349 -1.8076 33 1 5.4071 3.1263 -2.3483 34 1 7.7478 3.5252 -1.6355 35 1 7.8714 1.8339 -1.0945 36 1 10.3218 1.6649 -5.1038 37 1 3.9049 1.6473 2.3677 38 1 5.3426 2.6956 2.3187 39 1 3.9504 3.1414 3.3340 40 1 1.6926 4.0297 0.5270 41 1 1.8184 3.8438 2.2931 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403968648.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:41 Heat of formation + Delta-G solvation = -82.447693 kcal Electronic energy + Delta-G solvation = -18116.905864 eV Core-core repulsion = 15416.223838 eV Total energy + Delta-G solvation = -2700.682026 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11553 -37.65837 -35.72891 -34.99706 -33.68666 -31.79809 -29.75817 -27.96643 -27.04439 -24.88034 -23.98905 -22.22722 -21.65256 -20.20096 -18.89064 -17.56114 -17.48741 -16.42003 -16.26120 -16.20040 -15.80137 -15.06621 -14.90288 -14.66520 -14.62062 -14.19713 -13.71328 -13.61418 -13.40435 -13.10838 -12.84382 -12.70058 -12.63280 -12.28493 -12.04580 -11.97218 -11.83551 -11.79964 -11.56566 -11.42264 -11.28184 -11.14848 -10.77002 -10.45861 -9.28387 -8.29937 -6.34344 1.35044 1.37198 1.49380 2.35774 2.75735 2.88357 3.05336 3.75094 3.89396 3.95258 4.08078 4.14252 4.19098 4.33763 4.37522 4.41771 4.52543 4.58667 4.62939 4.70890 4.72174 4.82480 4.84933 4.88463 4.96719 4.99475 5.01813 5.12054 5.13731 5.20000 5.32513 5.44927 5.49980 5.57931 5.65384 6.01357 6.10670 6.26552 6.29218 6.73727 7.30334 8.87155 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.032243 B = 0.005000 C = 0.004529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.208897 B = 5598.349709 C = 6181.009835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.099 3.901 4 H 0.059 0.941 5 C 0.019 3.981 6 N -0.540 5.540 7 C 0.066 3.934 8 C -0.088 4.088 9 C -0.009 4.009 10 C -0.533 4.533 11 H 0.029 0.971 12 C 0.003 3.997 13 N -0.953 5.953 14 Si 0.953 3.047 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.245 1.245 18 C 0.038 3.962 19 H 0.099 0.901 20 C -0.175 4.175 21 C 0.070 3.930 22 O -0.387 6.387 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.076 0.924 29 H 0.041 0.959 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.045 0.955 33 H 0.048 0.952 34 H 0.021 0.979 35 H 0.016 0.984 36 H 0.266 0.734 37 H 0.051 0.949 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.587 1.625 16.385 22.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C 0.041 3.959 4 H 0.077 0.923 5 C -0.109 4.109 6 N -0.264 5.264 7 C -0.062 4.062 8 C -0.126 4.126 9 C -0.047 4.047 10 C -0.571 4.571 11 H 0.047 0.953 12 C -0.194 4.194 13 N -0.594 5.594 14 Si 0.776 3.224 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.169 1.169 18 C -0.070 4.070 19 H 0.117 0.883 20 C -0.233 4.233 21 C -0.007 4.007 22 O -0.306 6.306 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.101 0.899 27 H 0.086 0.914 28 H 0.094 0.906 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.040 0.960 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.785 1.783 16.029 22.567 hybrid contribution 1.513 -0.323 0.122 1.552 sum -14.272 1.460 16.151 21.603 Atomic orbital electron populations 1.21653 0.94218 1.02155 1.01967 1.21543 0.97514 0.93247 1.03029 1.22180 0.91868 0.94798 0.87070 0.92282 1.22851 0.96501 0.89850 1.01673 1.62421 1.12496 1.17598 1.33877 1.22079 0.86766 1.01175 0.96138 1.21289 0.95721 0.99974 0.95599 1.19484 0.94320 0.96410 0.94478 1.21493 0.92793 1.44775 0.98029 0.95295 1.26051 1.01663 0.94591 0.97076 1.70075 1.19185 1.50083 1.20024 0.85617 0.77881 0.79728 0.79166 1.19160 1.20890 1.16867 1.22524 0.97166 0.99722 0.87591 0.88255 1.22290 1.00534 1.01120 0.99388 1.22766 0.91344 0.83312 1.03237 1.87926 1.76548 1.26986 1.39138 0.91595 0.92633 0.92735 0.89948 0.91379 0.90573 0.94062 0.90410 0.94724 0.93659 0.93350 0.96044 0.96517 0.92483 0.93027 0.93156 0.90328 0.92546 0.86320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.81 71.98 0.71 -1.74 16 2 C -0.12 -2.28 5.65 30.59 0.17 -2.11 16 3 C 0.10 2.32 2.80 30.63 0.09 2.40 16 4 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 5 C 0.02 0.53 4.33 86.31 0.37 0.90 16 6 N -0.54 -15.11 4.68 -870.01 -4.07 -19.18 16 7 C 0.07 2.09 4.32 86.30 0.37 2.46 16 8 C -0.09 -3.53 5.09 30.59 0.16 -3.37 16 9 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 10 C -0.53 -31.50 9.66 25.60 0.25 -31.25 16 11 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 12 C 0.00 0.16 5.47 84.65 0.46 0.62 16 13 N -0.95 -60.79 13.96 21.44 0.30 -60.49 16 14 Si 0.95 44.68 27.47 68.60 1.88 46.57 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.25 -10.60 6.54 99.48 0.65 -9.95 16 18 C 0.04 0.85 2.97 44.92 0.13 0.98 16 19 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 20 C -0.17 -3.66 8.39 71.98 0.60 -3.06 16 21 C 0.07 1.38 6.41 72.01 0.46 1.84 16 22 O -0.39 -8.95 9.46 -148.98 -1.41 -10.36 16 23 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 24 H 0.05 1.01 7.82 -2.39 -0.02 0.99 16 25 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 2.26 6.38 -2.39 -0.02 2.25 16 29 H 0.04 1.13 6.38 -2.39 -0.02 1.12 16 30 H 0.08 2.35 8.04 -2.39 -0.02 2.33 16 31 H 0.03 1.08 6.90 -2.39 -0.02 1.07 16 32 H 0.04 1.86 6.52 -2.38 -0.02 1.84 16 33 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.02 0.99 7.20 -2.39 -0.02 0.97 16 35 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 36 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 37 H 0.05 1.20 6.06 -2.39 -0.01 1.19 16 38 H 0.05 1.13 6.70 -2.39 -0.02 1.11 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.38 312.50 1.51 -64.87 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: 0.91 Total: 11.24 kcal Atomic # 6 Polarization: -36.53 SS G_CDS: 3.90 Total: -32.63 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -3.77 Total: -79.67 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: -1.41 Total: -10.36 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.88 Total: 46.57 kcal Total: -66.38 1.51 -64.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403968648.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.582 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds