Wall clock time and date at job start Sun Mar 29 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00014 * 2 1 4 4 C 1.52996 * 109.47069 * 60.00368 * 3 2 1 5 5 C 1.52997 * 109.47036 * 300.00045 * 3 2 1 6 6 C 1.53003 * 109.46792 * 180.02562 * 3 2 1 7 7 N 1.46898 * 109.47237 * 65.70592 * 6 3 2 8 8 C 1.46904 * 110.99945 * 286.57873 * 7 6 3 9 9 C 1.46904 * 111.00021 * 162.63076 * 7 6 3 10 10 C 1.53000 * 109.46995 * 198.65378 * 9 7 6 11 11 C 1.50702 * 115.55231 * 54.15044 * 10 9 7 12 12 H 1.08000 * 120.00213 * 272.96950 * 11 10 9 13 13 C 1.37881 * 119.99881 * 92.68619 * 11 10 9 14 14 N 1.31509 * 119.99807 * 173.87230 * 13 11 10 15 15 Si 1.86802 * 119.99907 * 353.87442 * 13 11 10 16 16 H 1.48499 * 109.47090 * 94.32368 * 15 13 11 17 17 H 1.48500 * 109.46873 * 214.32508 * 15 13 11 18 18 H 1.48507 * 109.47103 * 334.32450 * 15 13 11 19 19 C 1.52999 * 117.49746 * 199.82582 * 10 9 7 20 20 C 1.53003 * 117.49801 * 268.48285 * 10 9 7 21 21 H 1.08999 * 109.46790 * 60.00004 * 1 2 3 22 22 H 1.09006 * 109.47073 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46690 * 299.99778 * 1 2 3 24 24 H 1.09004 * 109.47076 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.46744 * 299.99338 * 4 3 2 26 26 H 1.08999 * 109.47368 * 59.99824 * 4 3 2 27 27 H 1.09007 * 109.47172 * 306.09561 * 5 3 2 28 28 H 1.08999 * 109.47241 * 66.10075 * 5 3 2 29 29 H 1.09004 * 109.47106 * 186.10186 * 5 3 2 30 30 H 1.08997 * 109.47292 * 305.70111 * 6 3 2 31 31 H 1.08997 * 109.47087 * 185.70452 * 6 3 2 32 32 H 1.08997 * 109.47412 * 310.13430 * 8 7 6 33 33 H 1.09008 * 109.46626 * 70.12718 * 8 7 6 34 34 H 1.08990 * 109.47409 * 190.12787 * 8 7 6 35 35 H 1.08998 * 109.46888 * 78.65193 * 9 7 6 36 36 H 1.08998 * 109.46565 * 318.65012 * 9 7 6 37 37 H 0.97003 * 119.99489 * 180.02562 * 14 13 11 38 38 H 1.09007 * 117.49590 * 215.00263 * 19 10 9 39 39 H 1.08994 * 117.50118 * 0.02562 * 19 10 9 40 40 H 1.09002 * 117.49520 * 359.97438 * 20 10 9 41 41 H 1.08997 * 117.49701 * 144.97241 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1845 -0.0006 7 7 3.9781 0.5780 -1.2633 8 6 3.6702 -0.8580 -1.2939 9 6 5.4107 0.8141 -1.4869 10 6 5.7382 0.5989 -2.9659 11 6 4.9074 1.3959 -3.9383 12 1 3.9621 1.0066 -4.2867 13 6 5.3512 2.6248 -4.3787 14 7 4.6886 3.2658 -5.3165 15 14 6.8939 3.3791 -3.6433 16 1 8.0651 3.0334 -4.4882 17 1 6.7437 4.8553 -3.5852 18 1 7.0991 2.8480 -2.2717 19 6 7.1996 0.3363 -3.3349 20 6 6.1782 -0.8022 -3.3954 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.0019 3.0606 1.2490 25 1 0.4723 2.1508 1.2492 26 1 1.8805 1.5237 2.1392 27 1 1.7842 1.4720 -2.1359 28 1 0.4852 2.2456 -1.1963 29 1 2.0854 3.0174 -1.3055 30 1 3.8507 0.5579 0.8336 31 1 3.9785 2.1751 0.1015 32 1 4.0268 -1.3258 -0.3762 33 1 2.5922 -0.9967 -1.3771 34 1 4.1629 -1.3171 -2.1509 35 1 5.9923 0.1192 -0.8811 36 1 5.6586 1.8374 -1.2051 37 1 5.0011 4.1302 -5.6265 38 1 7.5602 0.7401 -4.2810 39 1 7.9277 0.3164 -2.5240 40 1 6.2347 -1.5704 -2.6242 41 1 5.8663 -1.1475 -4.3811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404228328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:34 Heat of formation + Delta-G solvation = -10.150047 kcal Electronic energy + Delta-G solvation = -18949.615386 eV Core-core repulsion = 16252.068422 eV Total energy + Delta-G solvation = -2697.546965 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.07567 -37.43025 -35.04223 -32.28516 -31.85655 -27.44022 -27.03561 -26.84077 -25.95623 -25.03984 -21.67769 -21.51699 -19.51233 -18.74096 -16.18004 -16.10945 -15.40448 -15.19008 -14.81874 -14.29635 -14.01061 -13.86358 -13.17424 -12.78073 -12.70732 -12.51257 -12.28255 -12.09840 -11.67959 -11.45646 -11.28291 -11.10805 -11.01163 -10.91752 -10.86823 -10.41566 -10.30441 -10.22491 -9.79834 -9.47722 -9.19144 -8.83371 -8.41225 -8.32731 -7.38815 -5.93006 -3.89306 3.37065 3.46400 3.50563 4.04481 4.49117 4.56024 5.07063 5.09167 5.30841 5.32263 5.38557 5.49836 5.58813 5.66748 5.78198 5.81516 5.91947 5.93803 6.02584 6.09240 6.13930 6.19763 6.25465 6.30550 6.34180 6.38191 6.42593 6.54259 6.65504 6.81684 6.88114 7.04555 7.16894 7.28099 7.52666 7.82629 7.93268 8.02033 8.73503 9.15307 9.71877 11.19864 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.008081 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.292993 B = 3463.949046 C = 3834.426505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.373 6.373 3 C 0.118 3.882 4 C -0.176 4.176 5 C -0.160 4.160 6 C 0.071 3.929 7 N -0.506 5.506 8 C 0.031 3.969 9 C 0.093 3.907 10 C 0.015 3.985 11 C -0.449 4.449 12 H 0.079 0.921 13 C 0.072 3.928 14 N -0.905 5.905 15 Si 0.877 3.123 16 H -0.284 1.284 17 H -0.298 1.298 18 H -0.262 1.262 19 C -0.206 4.206 20 C -0.185 4.185 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.036 0.964 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.080 0.920 32 H 0.006 0.994 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.007 0.993 36 H 0.064 0.936 37 H 0.260 0.740 38 H 0.087 0.913 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 -4.199 11.895 13.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.293 6.293 3 C 0.078 3.922 4 C -0.234 4.234 5 C -0.217 4.217 6 C -0.058 4.058 7 N -0.228 5.228 8 C -0.117 4.117 9 C -0.035 4.035 10 C 0.014 3.986 11 C -0.487 4.487 12 H 0.097 0.903 13 C -0.129 4.129 14 N -0.544 5.544 15 Si 0.706 3.294 16 H -0.210 1.210 17 H -0.225 1.225 18 H -0.187 1.187 19 C -0.244 4.244 20 C -0.222 4.222 21 H 0.063 0.937 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.098 0.902 32 H 0.024 0.976 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.025 0.975 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.787 -3.966 11.402 12.987 hybrid contribution 1.161 0.420 1.044 1.617 sum -3.626 -3.546 12.447 13.440 Atomic orbital electron populations 1.22700 0.82681 1.01862 0.99862 1.88019 1.18595 1.27792 1.94851 1.21563 0.93400 0.83024 0.94195 1.22397 1.01567 1.01039 0.98414 1.22183 0.98906 1.01508 0.99102 1.22115 0.92454 0.99781 0.91424 1.61652 1.17251 1.13192 1.30745 1.22509 1.02529 0.87643 0.99008 1.21885 0.86336 0.99012 0.96218 1.19405 0.91794 0.94770 0.92654 1.20108 1.05493 1.01445 1.21656 0.90299 1.24925 0.96582 0.96904 0.94442 1.69905 1.40514 1.15278 1.28693 0.86919 0.84125 0.77570 0.80801 1.21039 1.22530 1.18676 1.22960 0.93884 1.05669 1.01882 1.22873 1.05661 0.92195 1.01508 0.93743 0.90460 0.94570 0.91528 0.92308 0.92366 0.89400 0.94174 0.91743 0.95275 0.90193 0.97599 0.90421 0.91429 0.97512 0.91754 0.93026 0.89487 0.91345 0.91426 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.21 101.05 1.03 1.34 16 2 O -0.37 -5.70 7.49 -35.23 -0.26 -5.96 16 3 C 0.12 1.78 0.88 -90.62 -0.08 1.70 16 4 C -0.18 -2.15 8.25 37.16 0.31 -1.85 16 5 C -0.16 -2.66 7.73 37.16 0.29 -2.37 16 6 C 0.07 1.19 4.33 -3.82 -0.02 1.17 16 7 N -0.51 -9.93 3.43 -242.92 -0.83 -10.76 16 8 C 0.03 0.57 8.85 60.07 0.53 1.10 16 9 C 0.09 1.96 4.73 -3.82 -0.02 1.94 16 10 C 0.02 0.35 0.70 -155.66 -0.11 0.24 16 11 C -0.45 -12.40 9.11 -34.44 -0.31 -12.71 16 12 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 13 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 14 N -0.90 -27.61 13.96 55.43 0.77 -26.84 16 15 Si 0.88 21.91 24.83 -169.99 -4.22 17.69 16 16 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 17 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 18 H -0.26 -6.19 5.67 56.52 0.32 -5.87 16 19 C -0.21 -4.49 7.51 -26.69 -0.20 -4.69 16 20 C -0.19 -3.85 8.42 -26.69 -0.22 -4.08 16 21 H 0.04 0.54 6.56 -51.93 -0.34 0.20 16 22 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 24 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.06 0.65 6.54 -51.93 -0.34 0.31 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.09 1.75 7.68 -51.92 -0.40 1.35 16 28 H 0.04 0.58 6.88 -51.93 -0.36 0.22 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.03 0.47 7.86 -51.93 -0.41 0.06 16 31 H 0.08 1.31 7.66 -51.93 -0.40 0.92 16 32 H 0.01 0.10 7.89 -51.93 -0.41 -0.31 16 33 H 0.08 1.41 5.98 -51.92 -0.31 1.10 16 34 H 0.07 1.28 5.63 -51.93 -0.29 0.99 16 35 H 0.01 0.13 7.96 -51.93 -0.41 -0.28 16 36 H 0.06 1.40 6.25 -51.93 -0.32 1.07 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.09 2.01 6.96 -51.93 -0.36 1.64 16 39 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 40 H 0.07 1.26 7.76 -51.93 -0.40 0.86 16 41 H 0.08 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -29.70 309.01 -6.06 -35.75 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -7.26 Total: 1.72 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: 1.10 Total: -16.26 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.06 Total: -37.60 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.26 Total: -5.96 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.22 Total: 17.69 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.70 -6.06 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404228328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.605 kcal (2) G-P(sol) polarization free energy of solvation -29.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds