Wall clock time and date at job start Sun Mar 29 2020 22:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00014 * 2 1 4 4 C 1.52996 * 109.47069 * 60.00368 * 3 2 1 5 5 C 1.52997 * 109.47036 * 300.00045 * 3 2 1 6 6 C 1.53003 * 109.46792 * 180.02562 * 3 2 1 7 7 N 1.46898 * 109.47237 * 65.70592 * 6 3 2 8 8 C 1.46904 * 110.99945 * 286.57873 * 7 6 3 9 9 C 1.46904 * 111.00021 * 162.63076 * 7 6 3 10 10 C 1.53000 * 109.46995 * 198.65378 * 9 7 6 11 11 C 1.50702 * 115.55231 * 54.15044 * 10 9 7 12 12 H 1.08000 * 120.00213 * 272.96950 * 11 10 9 13 13 C 1.37881 * 119.99881 * 92.68619 * 11 10 9 14 14 N 1.31509 * 119.99807 * 173.87230 * 13 11 10 15 15 Si 1.86802 * 119.99907 * 353.87442 * 13 11 10 16 16 H 1.48499 * 109.47090 * 94.32368 * 15 13 11 17 17 H 1.48500 * 109.46873 * 214.32508 * 15 13 11 18 18 H 1.48507 * 109.47103 * 334.32450 * 15 13 11 19 19 C 1.52999 * 117.49746 * 199.82582 * 10 9 7 20 20 C 1.53003 * 117.49801 * 268.48285 * 10 9 7 21 21 H 1.08999 * 109.46790 * 60.00004 * 1 2 3 22 22 H 1.09006 * 109.47073 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46690 * 299.99778 * 1 2 3 24 24 H 1.09004 * 109.47076 * 180.02562 * 4 3 2 25 25 H 1.08999 * 109.46744 * 299.99338 * 4 3 2 26 26 H 1.08999 * 109.47368 * 59.99824 * 4 3 2 27 27 H 1.09007 * 109.47172 * 306.09561 * 5 3 2 28 28 H 1.08999 * 109.47241 * 66.10075 * 5 3 2 29 29 H 1.09004 * 109.47106 * 186.10186 * 5 3 2 30 30 H 1.08997 * 109.47292 * 305.70111 * 6 3 2 31 31 H 1.08997 * 109.47087 * 185.70452 * 6 3 2 32 32 H 1.08997 * 109.47412 * 310.13430 * 8 7 6 33 33 H 1.09008 * 109.46626 * 70.12718 * 8 7 6 34 34 H 1.08990 * 109.47409 * 190.12787 * 8 7 6 35 35 H 1.08998 * 109.46888 * 78.65193 * 9 7 6 36 36 H 1.08998 * 109.46565 * 318.65012 * 9 7 6 37 37 H 0.97003 * 119.99489 * 180.02562 * 14 13 11 38 38 H 1.09007 * 117.49590 * 215.00263 * 19 10 9 39 39 H 1.08994 * 117.50118 * 0.02562 * 19 10 9 40 40 H 1.09002 * 117.49520 * 359.97438 * 20 10 9 41 41 H 1.08997 * 117.49701 * 144.97241 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2493 5 6 1.5588 2.0647 -1.2492 6 6 3.5355 1.1845 -0.0006 7 7 3.9781 0.5780 -1.2633 8 6 3.6702 -0.8580 -1.2939 9 6 5.4107 0.8141 -1.4869 10 6 5.7382 0.5989 -2.9659 11 6 4.9074 1.3959 -3.9383 12 1 3.9621 1.0066 -4.2867 13 6 5.3512 2.6248 -4.3787 14 7 4.6886 3.2658 -5.3165 15 14 6.8939 3.3791 -3.6433 16 1 8.0651 3.0334 -4.4882 17 1 6.7437 4.8553 -3.5852 18 1 7.0991 2.8480 -2.2717 19 6 7.1996 0.3363 -3.3349 20 6 6.1782 -0.8022 -3.3954 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 2.0019 3.0606 1.2490 25 1 0.4723 2.1508 1.2492 26 1 1.8805 1.5237 2.1392 27 1 1.7842 1.4720 -2.1359 28 1 0.4852 2.2456 -1.1963 29 1 2.0854 3.0174 -1.3055 30 1 3.8507 0.5579 0.8336 31 1 3.9785 2.1751 0.1015 32 1 4.0268 -1.3258 -0.3762 33 1 2.5922 -0.9967 -1.3771 34 1 4.1629 -1.3171 -2.1509 35 1 5.9923 0.1192 -0.8811 36 1 5.6586 1.8374 -1.2051 37 1 5.0011 4.1302 -5.6265 38 1 7.5602 0.7401 -4.2810 39 1 7.9277 0.3164 -2.5240 40 1 6.2347 -1.5704 -2.6242 41 1 5.8663 -1.1475 -4.3811 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404228328.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:34 Heat of formation + Delta-G solvation = -29.281120 kcal Electronic energy + Delta-G solvation = -18950.444972 eV Core-core repulsion = 16252.068422 eV Total energy + Delta-G solvation = -2698.376550 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.33688 -39.02753 -36.53741 -34.07887 -33.45482 -28.87463 -28.32745 -28.09242 -27.47152 -26.78846 -23.27017 -23.10276 -20.79683 -20.56216 -18.10070 -17.37286 -16.85914 -16.67656 -16.29411 -15.56860 -15.54090 -15.47685 -14.69569 -14.56471 -14.10683 -13.92301 -13.76707 -13.27731 -13.12524 -13.02925 -12.79231 -12.57876 -12.45356 -12.30084 -12.14783 -12.06587 -12.05058 -11.84046 -11.55763 -11.16398 -10.74910 -10.51138 -10.29807 -10.15335 -8.84382 -8.14391 -6.14114 1.38746 1.41667 1.53851 2.46339 2.95093 3.00777 3.19979 3.46643 3.90598 4.10042 4.17361 4.25286 4.37519 4.48459 4.54615 4.58111 4.59980 4.62630 4.62816 4.73452 4.77814 4.80673 4.86952 4.87114 4.97647 4.99584 5.05050 5.12163 5.15186 5.25055 5.42684 5.47479 5.55870 5.61710 5.84151 6.37046 6.43953 6.49557 6.59104 6.91152 7.50115 9.02414 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026228 B = 0.008081 C = 0.007301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.292993 B = 3463.949046 C = 3834.426505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.120 3.880 4 C -0.169 4.169 5 C -0.152 4.152 6 C 0.069 3.931 7 N -0.531 5.531 8 C 0.040 3.960 9 C 0.101 3.899 10 C -0.010 4.010 11 C -0.439 4.439 12 H 0.028 0.972 13 C 0.013 3.987 14 N -0.957 5.957 15 Si 0.936 3.064 16 H -0.278 1.278 17 H -0.304 1.304 18 H -0.234 1.234 19 C -0.201 4.201 20 C -0.168 4.168 21 H 0.037 0.963 22 H 0.092 0.908 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.021 0.979 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.030 0.970 36 H 0.055 0.945 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -4.932 14.726 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.310 6.310 3 C 0.080 3.920 4 C -0.226 4.226 5 C -0.209 4.209 6 C -0.059 4.059 7 N -0.254 5.254 8 C -0.107 4.107 9 C -0.027 4.027 10 C -0.012 4.012 11 C -0.477 4.477 12 H 0.046 0.954 13 C -0.182 4.182 14 N -0.599 5.599 15 Si 0.763 3.237 16 H -0.204 1.204 17 H -0.231 1.231 18 H -0.157 1.157 19 C -0.238 4.238 20 C -0.205 4.205 21 H 0.055 0.945 22 H 0.111 0.889 23 H 0.074 0.926 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.048 0.952 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.866 -4.728 14.255 15.509 hybrid contribution 0.736 0.559 0.095 0.929 sum -3.131 -4.169 14.351 15.268 Atomic orbital electron populations 1.22876 0.81048 1.03179 1.00437 1.87974 1.20388 1.27685 1.94969 1.21498 0.92585 0.83307 0.94568 1.22318 1.02491 1.00906 0.96932 1.22076 1.00069 1.00231 0.98571 1.22197 0.93576 0.99730 0.90421 1.61590 1.16706 1.14154 1.32956 1.22390 1.02200 0.87043 0.99108 1.21696 0.87530 0.99055 0.94427 1.19345 0.92500 0.96104 0.93206 1.20163 1.03963 1.01670 1.21888 0.95390 1.25716 1.00049 0.97517 0.94888 1.70068 1.42964 1.15905 1.30948 0.85946 0.80141 0.76234 0.81413 1.20423 1.23136 1.15711 1.23001 0.93454 1.05331 1.02058 1.22860 1.04063 0.91889 1.01697 0.94473 0.88924 0.92580 0.90957 0.90941 0.91214 0.93550 0.92233 0.93184 0.93962 0.90182 0.96043 0.90830 0.92655 0.95201 0.92643 0.93221 0.91140 0.88255 0.88321 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.21 113.37 1.16 1.61 16 2 O -0.39 -11.25 7.49 -148.98 -1.12 -12.37 16 3 C 0.12 3.46 0.88 -10.79 -0.01 3.45 16 4 C -0.17 -3.64 8.25 71.98 0.59 -3.05 16 5 C -0.15 -5.11 7.73 71.98 0.56 -4.55 16 6 C 0.07 2.19 4.33 86.30 0.37 2.57 16 7 N -0.53 -20.36 3.43 -922.45 -3.17 -23.52 16 8 C 0.04 1.42 8.85 127.69 1.13 2.55 16 9 C 0.10 4.02 4.73 86.30 0.41 4.43 16 10 C -0.01 -0.47 0.70 -52.93 -0.04 -0.50 16 11 C -0.44 -24.93 9.11 25.60 0.23 -24.70 16 12 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 13 C 0.01 0.78 5.46 84.66 0.46 1.25 16 14 N -0.96 -60.84 13.96 21.45 0.30 -60.54 16 15 Si 0.94 45.14 24.83 68.60 1.70 46.85 16 16 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 17 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 18 H -0.23 -10.14 5.67 99.48 0.56 -9.58 16 19 C -0.20 -8.21 7.51 30.62 0.23 -7.98 16 20 C -0.17 -6.66 8.42 30.62 0.26 -6.41 16 21 H 0.04 0.86 6.56 -2.39 -0.02 0.84 16 22 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 23 H 0.06 1.01 6.42 -2.39 -0.02 1.00 16 24 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 25 H 0.07 1.37 6.54 -2.39 -0.02 1.35 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.93 7.68 -2.38 -0.02 1.91 16 28 H 0.06 1.70 6.88 -2.39 -0.02 1.69 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.04 1.24 7.86 -2.39 -0.02 1.22 16 31 H 0.08 2.50 7.66 -2.39 -0.02 2.48 16 32 H 0.02 0.67 7.89 -2.39 -0.02 0.66 16 33 H 0.07 2.63 5.98 -2.38 -0.01 2.62 16 34 H 0.05 2.04 5.63 -2.39 -0.01 2.03 16 35 H 0.03 1.06 7.96 -2.39 -0.02 1.04 16 36 H 0.06 2.28 6.25 -2.39 -0.01 2.26 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.07 3.12 6.96 -2.38 -0.02 3.10 16 39 H 0.10 3.48 8.14 -2.39 -0.02 3.46 16 40 H 0.10 3.32 7.76 -2.39 -0.02 3.30 16 41 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -66.04 309.01 3.91 -62.13 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: 0.83 Total: 18.81 kcal Atomic # 6 Polarization: -36.71 SS G_CDS: 5.36 Total: -31.35 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -2.87 Total: -84.06 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -1.12 Total: -12.37 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.70 Total: 46.85 kcal Total: -66.04 3.91 -62.13 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404228328.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.847 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds