Wall clock time and date at job start Sun Mar 29 2020 22:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08997 * 109.50293 * 305.08204 * 3 2 1 5 5 C 1.53101 * 109.50293 * 185.00081 * 3 2 1 6 6 N 1.47014 * 109.25599 * 183.21254 * 5 3 2 7 7 C 1.46897 * 111.00160 * 182.38868 * 6 5 3 8 8 H 1.09002 * 109.46798 * 60.00493 * 7 6 5 9 9 C 1.53001 * 109.47413 * 300.00425 * 7 6 5 10 10 C 1.53005 * 109.47526 * 180.02562 * 7 6 5 11 11 C 1.50703 * 109.47010 * 295.00527 * 10 7 6 12 12 H 1.07996 * 119.99738 * 359.97438 * 11 10 7 13 13 C 1.37873 * 119.99876 * 179.97438 * 11 10 7 14 14 N 1.31514 * 120.00045 * 179.97438 * 13 11 10 15 15 Si 1.86798 * 120.00232 * 359.97438 * 13 11 10 16 16 H 1.48496 * 109.47353 * 89.99707 * 15 13 11 17 17 H 1.48500 * 109.47260 * 210.00066 * 15 13 11 18 18 H 1.48503 * 109.46795 * 330.00280 * 15 13 11 19 19 C 1.47016 * 110.75133 * 58.61672 * 6 5 3 20 20 C 1.53099 * 109.25627 * 301.38164 * 19 6 5 21 21 H 1.08995 * 109.50982 * 296.91168 * 20 19 6 22 22 C 1.53006 * 109.50226 * 176.78249 * 20 19 6 23 23 O 1.43013 * 109.26097 * 56.85192 * 20 19 6 24 24 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 25 25 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 26 26 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 28 28 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 29 29 H 1.09004 * 109.50720 * 303.14563 * 5 3 2 30 30 H 1.08995 * 109.50713 * 63.28109 * 5 3 2 31 31 H 1.09002 * 109.47195 * 299.99826 * 9 7 6 32 32 H 1.09005 * 109.46945 * 59.99465 * 9 7 6 33 33 H 1.09000 * 109.47339 * 179.97438 * 9 7 6 34 34 H 1.08999 * 109.46667 * 54.99832 * 10 7 6 35 35 H 1.09000 * 109.47001 * 175.00226 * 10 7 6 36 36 H 0.96996 * 120.00305 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.50853 * 61.31752 * 19 6 5 38 38 H 1.08999 * 109.50649 * 181.45069 * 19 6 5 39 39 H 1.08995 * 109.46919 * 60.00664 * 22 20 19 40 40 H 1.09006 * 109.46602 * 179.97438 * 22 20 19 41 41 H 1.08993 * 109.47350 * 299.99684 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9824 -0.8408 5 6 3.5658 1.4452 -0.1258 6 7 4.0563 2.8289 -0.0478 7 6 5.5140 2.8813 -0.2213 8 1 5.7789 2.4711 -1.1958 9 6 6.1885 2.0590 0.8786 10 6 5.9862 4.3340 -0.1336 11 6 5.4187 5.1174 -1.2892 12 1 4.7850 4.6279 -2.0139 13 6 5.7086 6.4588 -1.4212 14 7 5.2137 7.1424 -2.4299 15 14 6.8041 7.3055 -0.1672 16 1 8.2204 7.2110 -0.6033 17 1 6.4151 8.7342 -0.0547 18 1 6.6476 6.6443 1.1532 19 6 3.6539 3.4535 1.2208 20 6 2.1272 3.4306 1.3330 21 1 1.6943 4.0291 0.5315 22 6 1.7059 4.0064 2.6865 23 8 1.6664 2.0812 1.2239 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3635 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9989 0.8593 0.6850 30 1 3.8528 1.0108 -1.0833 31 1 5.9236 2.4693 1.8532 32 1 5.8521 1.0241 0.8165 33 1 7.2701 2.0976 0.7496 34 1 5.6442 4.7712 0.8045 35 1 7.0751 4.3651 -0.1733 36 1 5.4173 8.0862 -2.5226 37 1 4.0884 2.8997 2.0530 38 1 4.0053 4.4850 1.2462 39 1 2.0606 5.0336 2.7707 40 1 0.6188 3.9902 2.7656 41 1 2.1377 3.4060 3.4872 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411257214.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:12 Heat of formation + Delta-G solvation = -54.660918 kcal Electronic energy + Delta-G solvation = -18768.054159 eV Core-core repulsion = 16068.577058 eV Total energy + Delta-G solvation = -2699.477101 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.66663 -36.58722 -34.31604 -32.73441 -31.31555 -30.82906 -27.95219 -27.51989 -25.28961 -23.49064 -22.08477 -21.33158 -20.28365 -18.74347 -16.62048 -16.38647 -15.87692 -15.02539 -14.56440 -14.26327 -14.14638 -13.81657 -13.64989 -13.00126 -12.78688 -12.41834 -12.24994 -12.16695 -12.07702 -11.82489 -11.64418 -11.44864 -11.11942 -10.93722 -10.92225 -10.67259 -10.53308 -10.34613 -9.96582 -9.65601 -9.55449 -9.17083 -9.00178 -8.46070 -7.57460 -5.94312 -3.89167 3.32420 3.40703 3.42273 3.93504 4.35104 4.50692 4.95767 5.13616 5.25297 5.27879 5.37933 5.46946 5.51029 5.53640 5.62972 5.65398 5.74758 5.81615 5.83620 5.90364 5.95054 5.96205 6.02412 6.12265 6.16648 6.26383 6.34558 6.37853 6.41219 6.52662 6.55451 6.73573 7.07270 7.30924 7.53677 7.74023 7.76233 7.90870 8.68375 9.18481 9.68319 11.19554 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.006832 C = 0.006575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.493682 B = 4097.644850 C = 4257.826989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C 0.095 3.905 4 H 0.065 0.935 5 C 0.021 3.979 6 N -0.508 5.508 7 C 0.096 3.904 8 H 0.077 0.923 9 C -0.188 4.188 10 C -0.010 4.010 11 C -0.494 4.494 12 H 0.079 0.921 13 C 0.063 3.937 14 N -0.906 5.906 15 Si 0.872 3.128 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.025 3.975 20 C 0.089 3.911 21 H 0.068 0.932 22 C -0.141 4.141 23 O -0.384 6.384 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.036 0.964 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.031 0.969 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.757 -11.773 8.038 15.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C 0.037 3.963 4 H 0.083 0.917 5 C -0.108 4.108 6 N -0.232 5.232 7 C -0.012 4.012 8 H 0.095 0.905 9 C -0.247 4.247 10 C -0.048 4.048 11 C -0.532 4.532 12 H 0.097 0.903 13 C -0.137 4.137 14 N -0.546 5.546 15 Si 0.699 3.301 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.193 1.193 19 C -0.103 4.103 20 C 0.031 3.969 21 H 0.086 0.914 22 C -0.198 4.198 23 O -0.304 6.304 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.077 -11.407 7.711 15.050 hybrid contribution 1.266 0.282 1.030 1.656 sum -4.811 -11.125 8.741 14.944 Atomic orbital electron populations 1.21689 0.95352 1.01041 1.02361 1.21505 0.96597 0.94734 1.02318 1.22138 0.93361 0.93309 0.87499 0.91673 1.22798 0.95450 0.91357 1.01173 1.62299 1.13222 1.14564 1.33080 1.21699 0.84725 0.97924 0.96865 0.90480 1.22557 1.01413 0.99887 1.00796 1.19758 0.95642 0.91183 0.98183 1.21052 1.29554 0.93696 1.08918 0.90270 1.25009 0.95931 0.97508 0.95232 1.69908 1.45753 1.08515 1.30422 0.86919 0.81402 0.78877 0.82854 1.20520 1.21538 1.19350 1.22814 0.95047 1.01890 0.90524 1.22159 0.93497 0.83141 0.98062 0.91385 1.21717 1.01676 1.00763 0.95683 1.87871 1.77036 1.26716 1.38813 0.92041 0.92841 0.93141 0.90771 0.91571 0.94615 0.90417 0.93057 0.93527 0.92448 0.96378 0.96737 0.93010 0.95059 0.88370 0.90905 0.92082 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.81 37.16 0.36 -1.23 16 2 C -0.11 -1.34 5.64 -26.73 -0.15 -1.49 16 3 C 0.09 1.42 2.80 -26.68 -0.07 1.34 16 4 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 5 C 0.02 0.33 4.48 -3.71 -0.02 0.32 16 6 N -0.51 -9.76 4.47 -226.33 -1.01 -10.77 16 7 C 0.10 1.90 2.37 -67.71 -0.16 1.74 16 8 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 9 C -0.19 -3.10 8.49 37.16 0.32 -2.79 16 10 C -0.01 -0.24 3.21 -27.88 -0.09 -0.33 16 11 C -0.49 -13.87 9.39 -34.44 -0.32 -14.19 16 12 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 13 C 0.06 1.83 5.47 -17.82 -0.10 1.73 16 14 N -0.91 -28.03 13.96 55.43 0.77 -27.26 16 15 Si 0.87 21.66 27.47 -169.99 -4.67 16.99 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 19 C 0.03 0.46 4.16 -3.71 -0.02 0.45 16 20 C 0.09 1.46 3.43 -26.68 -0.09 1.37 16 21 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 22 C -0.14 -1.90 9.57 37.16 0.36 -1.54 16 23 O -0.38 -6.20 9.66 -35.23 -0.34 -6.54 16 24 H 0.06 0.72 7.83 -51.93 -0.41 0.32 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.56 6.44 -51.93 -0.33 0.22 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.05 0.85 6.54 -51.93 -0.34 0.51 16 32 H 0.05 0.69 6.46 -51.93 -0.34 0.36 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.02 0.43 5.08 -51.93 -0.26 0.17 16 35 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.03 0.55 6.52 -51.93 -0.34 0.21 16 38 H 0.10 1.99 6.00 -51.93 -0.31 1.68 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 311.58 15.07 4.70 4.70 Total: -1.00 -30.31 311.58 -7.92 -38.23 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -7.38 Total: -0.72 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: 0.02 Total: -14.62 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: -0.24 Total: -38.03 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.34 Total: -6.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.31 -7.92 -38.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257214.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.430 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds