Wall clock time and date at job start Sun Mar 29 2020 22:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 H 1.09003 * 109.50435 * 304.91449 * 3 2 1 5 5 C 1.53094 * 109.50678 * 184.77894 * 3 2 1 6 6 N 1.47013 * 109.25843 * 183.21514 * 5 3 2 7 7 C 1.46906 * 111.00055 * 182.39477 * 6 5 3 8 8 H 1.08998 * 109.46921 * 55.00169 * 7 6 5 9 9 C 1.52999 * 109.46657 * 295.00340 * 7 6 5 10 10 C 1.52995 * 109.47012 * 175.00510 * 7 6 5 11 11 C 1.50702 * 109.47108 * 294.99684 * 10 7 6 12 12 H 1.08006 * 119.99610 * 0.02562 * 11 10 7 13 13 C 1.37876 * 120.00356 * 180.02562 * 11 10 7 14 14 N 1.31510 * 119.99752 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00140 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47303 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47330 * 119.99965 * 15 13 11 18 18 H 1.48500 * 109.47215 * 240.00110 * 15 13 11 19 19 C 1.47016 * 110.75092 * 58.61846 * 6 5 3 20 20 C 1.53098 * 109.25935 * 301.38403 * 19 6 5 21 21 H 1.09002 * 109.50820 * 176.78229 * 20 19 6 22 22 C 1.52996 * 109.54074 * 296.89223 * 20 19 6 23 23 O 1.43015 * 109.50519 * 64.99901 * 3 2 1 24 24 H 1.09004 * 109.47002 * 60.00035 * 1 2 3 25 25 H 1.08993 * 109.47296 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47481 * 300.00338 * 1 2 3 27 27 H 1.09000 * 109.47276 * 240.00414 * 2 1 3 28 28 H 1.08992 * 109.46994 * 119.99574 * 2 1 3 29 29 H 1.08994 * 109.50753 * 303.15729 * 5 3 2 30 30 H 1.09000 * 109.50423 * 63.28341 * 5 3 2 31 31 H 1.08998 * 109.47315 * 299.99587 * 9 7 6 32 32 H 1.08993 * 109.47408 * 60.00150 * 9 7 6 33 33 H 1.09003 * 109.46776 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.47374 * 54.99630 * 10 7 6 35 35 H 1.09001 * 109.46811 * 175.00243 * 10 7 6 36 36 H 0.97004 * 120.00206 * 179.97438 * 14 13 11 37 37 H 1.09001 * 109.50478 * 181.44511 * 19 6 5 38 38 H 1.08999 * 109.50523 * 61.31911 * 19 6 5 39 39 H 1.09003 * 109.47341 * 179.89065 * 22 20 19 40 40 H 1.09001 * 109.47035 * 299.88939 * 22 20 19 41 41 H 1.09002 * 109.47693 * 59.88987 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6069 1.9817 -0.8425 5 6 3.5662 1.4452 -0.1202 6 7 4.0564 2.8290 -0.0422 7 6 5.5148 2.8812 -0.2106 8 1 5.7906 2.3899 -1.1436 9 6 6.1894 2.1656 0.9615 10 6 5.9719 4.3408 -0.2482 11 6 5.4050 5.0134 -1.4719 12 1 4.7807 4.4555 -2.1543 13 6 5.6832 6.3407 -1.7204 14 7 6.4437 7.0198 -0.8898 15 14 4.9799 7.1744 -3.2368 16 1 4.1635 6.1996 -4.0039 17 1 4.1272 8.3175 -2.8227 18 1 6.0904 7.6688 -4.0899 19 6 3.6495 3.4551 1.2242 20 6 2.1224 3.4323 1.3310 21 1 1.8186 3.8437 2.2937 22 6 1.5179 4.2712 0.2033 23 8 1.6620 2.0827 1.2218 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.9964 0.8602 0.6927 30 1 3.8567 1.0096 -1.0762 31 1 5.9135 2.6570 1.8945 32 1 5.8638 1.1258 0.9884 33 1 7.2715 2.2048 0.8368 34 1 5.6188 4.8553 0.6455 35 1 7.0606 4.3798 -0.2838 36 1 6.6398 7.9535 -1.0647 37 1 4.0008 4.4866 1.2496 38 1 4.0810 2.9023 2.0587 39 1 0.4307 4.2526 0.2793 40 1 1.8704 5.2993 0.2863 41 1 1.8220 3.8594 -0.7590 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411257217.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:14 Heat of formation + Delta-G solvation = -56.845407 kcal Electronic energy + Delta-G solvation = -18934.451596 eV Core-core repulsion = 16234.879768 eV Total energy + Delta-G solvation = -2699.571828 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.76638 -36.49174 -34.10918 -32.79665 -31.10282 -30.43177 -27.58768 -27.33339 -25.26722 -23.61992 -22.52339 -21.72916 -19.58521 -18.50006 -16.32977 -16.14302 -15.90839 -14.85944 -14.55346 -14.27379 -14.19810 -13.67431 -13.64908 -13.19689 -12.80107 -12.34498 -11.98361 -11.91847 -11.77154 -11.47595 -11.35529 -11.28986 -11.04620 -10.92120 -10.90631 -10.60302 -10.45133 -10.38545 -9.98288 -9.80511 -9.32545 -9.02868 -8.93314 -8.28220 -7.48840 -5.90942 -3.88821 3.36090 3.44023 3.49188 4.03936 4.43907 4.54757 5.01953 5.13558 5.27687 5.37076 5.45947 5.50289 5.53514 5.59726 5.66981 5.77433 5.81040 5.91927 5.96534 5.96795 6.02327 6.05498 6.17237 6.23555 6.26408 6.35864 6.41393 6.52131 6.58323 6.70204 6.82962 6.96021 7.49967 7.56877 7.65454 7.86923 7.98167 8.10311 8.55710 9.17503 9.73160 11.20996 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025737 B = 0.007326 C = 0.006598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.668871 B = 3820.966079 C = 4242.976629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.068 0.932 5 C 0.020 3.980 6 N -0.505 5.505 7 C 0.086 3.914 8 H 0.070 0.930 9 C -0.184 4.184 10 C 0.029 3.971 11 C -0.489 4.489 12 H 0.061 0.939 13 C 0.051 3.949 14 N -0.903 5.903 15 Si 0.887 3.113 16 H -0.273 1.273 17 H -0.287 1.287 18 H -0.288 1.288 19 C 0.024 3.976 20 C 0.092 3.908 21 H 0.096 0.904 22 C -0.171 4.171 23 O -0.383 6.383 24 H 0.051 0.949 25 H 0.049 0.951 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.257 0.743 37 H 0.100 0.900 38 H 0.032 0.968 39 H 0.046 0.954 40 H 0.068 0.932 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.514 -11.159 3.396 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.085 0.915 5 C -0.108 4.108 6 N -0.228 5.228 7 C -0.022 4.022 8 H 0.088 0.912 9 C -0.243 4.243 10 C -0.008 4.008 11 C -0.527 4.527 12 H 0.079 0.921 13 C -0.148 4.148 14 N -0.544 5.544 15 Si 0.716 3.284 16 H -0.198 1.198 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.104 4.104 20 C 0.034 3.966 21 H 0.113 0.887 22 C -0.228 4.228 23 O -0.302 6.302 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.118 0.882 38 H 0.050 0.950 39 H 0.065 0.935 40 H 0.087 0.913 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.764 -10.808 3.162 14.270 hybrid contribution 0.329 0.306 -0.322 0.553 sum -8.435 -10.502 2.840 13.766 Atomic orbital electron populations 1.21686 0.95413 1.00994 1.02304 1.21513 0.96534 0.94922 1.02282 1.22153 0.93360 0.93080 0.88060 0.91460 1.22786 0.95355 0.91673 1.01022 1.62348 1.13369 1.14122 1.33008 1.21938 0.84447 1.00137 0.95667 0.91174 1.22513 1.01436 0.99481 1.00882 1.19227 0.96005 0.87859 0.97753 1.21194 1.29017 0.95023 1.07493 0.92111 1.24996 0.95625 0.97678 0.96526 1.69971 1.38417 1.09169 1.36866 0.86605 0.78786 0.79486 0.83534 1.19784 1.21311 1.21402 1.22792 0.94818 1.02052 0.90760 1.22251 0.93185 0.82069 0.99082 0.88669 1.22224 0.99159 1.00999 1.00433 1.87930 1.77031 1.26421 1.38840 0.92940 0.93183 0.92025 0.90875 0.91588 0.94794 0.90626 0.92939 0.94073 0.92528 0.96237 0.96324 0.93371 0.88225 0.95033 0.93524 0.91337 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.81 37.16 0.36 -1.22 16 2 C -0.11 -1.35 5.65 -26.73 -0.15 -1.51 16 3 C 0.09 1.34 2.40 -26.68 -0.06 1.28 16 4 H 0.07 1.05 6.50 -51.93 -0.34 0.71 16 5 C 0.02 0.32 4.59 -3.71 -0.02 0.31 16 6 N -0.50 -9.53 3.80 -226.34 -0.86 -10.39 16 7 C 0.09 1.74 2.30 -67.71 -0.16 1.59 16 8 H 0.07 1.45 8.12 -51.93 -0.42 1.03 16 9 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16 10 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 11 C -0.49 -13.44 8.84 -34.44 -0.30 -13.74 16 12 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 13 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 14 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 15 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 16 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.02 0.43 4.28 -3.71 -0.02 0.42 16 20 C 0.09 1.48 3.92 -26.68 -0.10 1.37 16 21 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 22 C -0.17 -2.79 8.89 37.16 0.33 -2.46 16 23 O -0.38 -6.12 9.82 -35.23 -0.35 -6.46 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.72 7.82 -51.93 -0.41 0.32 16 27 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.54 6.56 -51.93 -0.34 0.20 16 30 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 31 H 0.05 0.92 6.44 -51.93 -0.33 0.59 16 32 H 0.04 0.65 6.58 -51.93 -0.34 0.30 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.51 6.14 -51.93 -0.32 0.20 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 37 H 0.10 2.05 6.12 -51.93 -0.32 1.73 16 38 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.35 6.13 -51.93 -0.32 1.03 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -29.17 310.94 -8.06 -37.23 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -7.24 Total: -0.80 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -0.02 Total: -14.92 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: -0.12 Total: -36.55 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.35 Total: -6.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.17 -8.06 -37.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257217.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.617 kcal (2) G-P(sol) polarization free energy of solvation -29.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds