Wall clock time and date at job start Sun Mar 29 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 H 1.09002 * 109.50600 * 305.08764 * 3 2 1 5 5 C 1.53100 * 109.50762 * 184.99567 * 3 2 1 6 6 N 1.47016 * 109.25821 * 183.21479 * 5 3 2 7 7 C 1.46901 * 110.99814 * 182.39426 * 6 5 3 8 8 H 1.08998 * 109.47321 * 295.49934 * 7 6 5 9 9 C 1.52997 * 109.46833 * 55.49752 * 7 6 5 10 10 C 1.52998 * 109.46903 * 175.49598 * 7 6 5 11 11 C 1.50699 * 109.47027 * 176.54806 * 10 7 6 12 12 H 1.08005 * 120.00177 * 354.91584 * 11 10 7 13 13 C 1.37881 * 120.00106 * 174.92581 * 11 10 7 14 14 N 1.31515 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00036 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47252 * 89.99536 * 15 13 11 17 17 H 1.48499 * 109.46909 * 209.99492 * 15 13 11 18 18 H 1.48498 * 109.47113 * 329.99324 * 15 13 11 19 19 C 1.47009 * 110.75143 * 58.61715 * 6 5 3 20 20 C 1.53097 * 109.26142 * 301.38685 * 19 6 5 21 21 H 1.08998 * 109.50849 * 176.78672 * 20 19 6 22 22 C 1.53007 * 109.53935 * 296.88963 * 20 19 6 23 23 O 1.43013 * 109.26247 * 56.84489 * 20 19 6 24 24 H 1.08997 * 109.47512 * 300.00025 * 1 2 3 25 25 H 1.09000 * 109.47125 * 60.00031 * 1 2 3 26 26 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47512 * 239.99975 * 2 1 3 28 28 H 1.09002 * 109.47156 * 119.99429 * 2 1 3 29 29 H 1.09008 * 109.50055 * 63.28396 * 5 3 2 30 30 H 1.08994 * 109.54239 * 303.17733 * 5 3 2 31 31 H 1.08997 * 109.47350 * 299.99333 * 9 7 6 32 32 H 1.09002 * 109.47707 * 60.00202 * 9 7 6 33 33 H 1.09005 * 109.47045 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47314 * 56.54308 * 10 7 6 35 35 H 1.08999 * 109.47200 * 296.54379 * 10 7 6 36 36 H 0.96996 * 119.99997 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.50719 * 61.31764 * 19 6 5 38 38 H 1.09003 * 109.50994 * 181.44604 * 19 6 5 39 39 H 1.08994 * 109.46990 * 179.80533 * 22 20 19 40 40 H 1.09005 * 109.47061 * 299.80531 * 22 20 19 41 41 H 1.08995 * 109.46846 * 59.80428 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0476 7 6 5.5140 2.8815 -0.2211 8 1 5.9973 2.3631 0.6069 9 6 5.8953 2.2044 -1.5390 10 6 5.9724 4.3410 -0.2463 11 6 7.4756 4.3939 -0.3391 12 1 8.0519 3.4816 -0.2936 13 6 8.1153 5.6069 -0.4818 14 7 7.4136 6.7179 -0.5375 15 14 9.9786 5.6725 -0.5960 16 1 10.3913 5.5687 -2.0187 17 1 10.4641 6.9577 -0.0323 18 1 10.5617 4.5433 0.1721 19 6 3.6538 3.4536 1.2209 20 6 2.1271 3.4306 1.3332 21 1 1.8268 3.8408 2.2974 22 6 1.5186 4.2709 0.2087 23 8 1.6663 2.0811 1.2239 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8529 1.0109 -1.0833 30 1 3.9995 0.8592 0.6845 31 1 5.5688 1.1646 -1.5211 32 1 5.4120 2.7228 -2.3672 33 1 6.9770 2.2437 -1.6680 34 1 5.6468 4.8399 0.6665 35 1 5.5372 4.8437 -1.1100 36 1 7.8636 7.5712 -0.6382 37 1 4.0883 2.8998 2.0532 38 1 4.0051 4.4851 1.2465 39 1 0.4317 4.2509 0.2876 40 1 1.8701 5.2993 0.2925 41 1 1.8205 3.8612 -0.7552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411257218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:16 Heat of formation + Delta-G solvation = -59.827388 kcal Electronic energy + Delta-G solvation = -18575.730934 eV Core-core repulsion = 15876.029798 eV Total energy + Delta-G solvation = -2699.701136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79266 -36.40834 -34.23145 -33.03110 -31.31728 -30.46389 -28.12664 -27.02671 -24.86181 -24.10502 -22.34427 -21.66416 -19.38804 -18.97571 -16.73851 -16.30355 -15.84606 -14.75346 -14.61466 -14.35249 -14.22503 -13.86545 -13.53965 -13.38018 -13.01676 -12.25115 -12.07895 -11.87752 -11.67633 -11.60308 -11.49532 -11.21681 -11.02618 -10.94034 -10.91459 -10.79005 -10.65884 -10.35927 -9.96023 -9.81139 -9.40509 -9.09450 -9.04094 -8.33996 -7.71575 -6.00603 -4.02146 3.30959 3.37525 3.40307 3.93457 4.29408 4.49842 4.93134 5.05242 5.19032 5.26222 5.34976 5.38758 5.44097 5.48320 5.60255 5.69186 5.83720 5.90830 5.92138 5.95512 6.01178 6.11935 6.16102 6.21467 6.27132 6.30594 6.32279 6.40886 6.60008 6.67993 6.90589 7.10276 7.45554 7.50024 7.56936 7.78201 7.86012 8.06487 8.42949 9.03969 9.61007 11.10760 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.005518 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.276605 B = 5072.796147 C = 5494.324563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.091 3.909 4 H 0.067 0.933 5 C 0.020 3.980 6 N -0.529 5.529 7 C 0.085 3.915 8 H 0.026 0.974 9 C -0.131 4.131 10 C 0.033 3.967 11 C -0.517 4.517 12 H 0.054 0.946 13 C 0.059 3.941 14 N -0.893 5.893 15 Si 0.890 3.110 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.023 3.977 20 C 0.091 3.909 21 H 0.098 0.902 22 C -0.172 4.172 23 O -0.381 6.381 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.084 0.916 30 H 0.032 0.968 31 H 0.031 0.969 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.014 0.986 35 H 0.028 0.972 36 H 0.260 0.740 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.711 -9.930 1.037 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.033 3.967 4 H 0.085 0.915 5 C -0.109 4.109 6 N -0.254 5.254 7 C -0.022 4.022 8 H 0.044 0.956 9 C -0.188 4.188 10 C -0.004 4.004 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.718 3.282 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.105 4.105 20 C 0.033 3.967 21 H 0.116 0.884 22 C -0.230 4.230 23 O -0.300 6.300 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.032 0.968 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.002 -9.560 0.778 15.364 hybrid contribution 1.704 -0.126 0.427 1.761 sum -10.298 -9.686 1.205 14.189 Atomic orbital electron populations 1.21688 0.95353 1.01098 1.02260 1.21519 0.96561 0.94808 1.02444 1.22181 0.93384 0.93238 0.87870 0.91535 1.22822 0.95184 0.91309 1.01550 1.62324 1.14879 1.15256 1.32913 1.21864 0.83476 1.00849 0.96003 0.95642 1.21778 1.02131 0.97348 0.97579 1.19149 0.95393 0.88187 0.97652 1.21185 0.91848 0.92562 1.50007 0.92747 1.24977 0.98078 0.95783 0.95401 1.69965 1.35234 0.97734 1.50319 0.86629 0.85979 0.77380 0.78228 1.20663 1.21256 1.19961 1.22790 0.94970 1.01946 0.90801 1.22264 0.92961 0.82259 0.99205 0.88378 1.22245 0.99680 1.00675 1.00362 1.87951 1.77079 1.26306 1.38705 0.92024 0.92953 0.93094 0.90789 0.91464 0.89814 0.94956 0.94961 0.92643 0.91411 0.96827 0.95340 0.93030 0.94872 0.88488 0.93106 0.91535 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.81 37.16 0.36 -1.12 16 2 C -0.12 -1.30 5.64 -26.73 -0.15 -1.45 16 3 C 0.09 1.26 2.40 -26.68 -0.06 1.20 16 4 H 0.07 0.94 6.50 -51.93 -0.34 0.60 16 5 C 0.02 0.31 4.51 -3.71 -0.02 0.29 16 6 N -0.53 -9.68 3.96 -226.33 -0.90 -10.58 16 7 C 0.08 1.79 2.11 -67.71 -0.14 1.64 16 8 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 9 C -0.13 -2.51 8.61 37.16 0.32 -2.19 16 10 C 0.03 0.85 4.36 -27.88 -0.12 0.73 16 11 C -0.52 -14.34 8.29 -34.44 -0.29 -14.63 16 12 H 0.05 1.47 7.15 -52.48 -0.38 1.10 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 14 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 15 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.02 0.41 4.77 -3.71 -0.02 0.39 16 20 C 0.09 1.36 3.92 -26.68 -0.10 1.25 16 21 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 22 C -0.17 -2.45 8.89 37.16 0.33 -2.12 16 23 O -0.38 -5.79 9.83 -35.23 -0.35 -6.13 16 24 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 1.24 6.10 -51.92 -0.32 0.92 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.03 0.52 6.29 -51.93 -0.33 0.20 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 34 H 0.01 0.37 6.20 -51.93 -0.32 0.04 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.10 1.86 6.14 -51.93 -0.32 1.55 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 1.12 6.13 -51.93 -0.32 0.80 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -29.26 312.01 -8.10 -37.37 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -7.29 Total: -1.60 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: 0.01 Total: -14.42 kcal Atomic # 7 Polarization: -36.24 SS G_CDS: -0.16 Total: -36.40 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.35 Total: -6.13 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.26 -8.10 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.462 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds