Wall clock time and date at job start Sun Mar 29 2020 22:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46982 * 2 1 4 4 H 1.09002 * 109.50600 * 305.08764 * 3 2 1 5 5 C 1.53100 * 109.50762 * 184.99567 * 3 2 1 6 6 N 1.47016 * 109.25821 * 183.21479 * 5 3 2 7 7 C 1.46901 * 110.99814 * 182.39426 * 6 5 3 8 8 H 1.08998 * 109.47321 * 295.49934 * 7 6 5 9 9 C 1.52997 * 109.46833 * 55.49752 * 7 6 5 10 10 C 1.52998 * 109.46903 * 175.49598 * 7 6 5 11 11 C 1.50699 * 109.47027 * 176.54806 * 10 7 6 12 12 H 1.08005 * 120.00177 * 354.91584 * 11 10 7 13 13 C 1.37881 * 120.00106 * 174.92581 * 11 10 7 14 14 N 1.31515 * 119.99980 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00036 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47252 * 89.99536 * 15 13 11 17 17 H 1.48499 * 109.46909 * 209.99492 * 15 13 11 18 18 H 1.48498 * 109.47113 * 329.99324 * 15 13 11 19 19 C 1.47009 * 110.75143 * 58.61715 * 6 5 3 20 20 C 1.53097 * 109.26142 * 301.38685 * 19 6 5 21 21 H 1.08998 * 109.50849 * 176.78672 * 20 19 6 22 22 C 1.53007 * 109.53935 * 296.88963 * 20 19 6 23 23 O 1.43013 * 109.26247 * 56.84489 * 20 19 6 24 24 H 1.08997 * 109.47512 * 300.00025 * 1 2 3 25 25 H 1.09000 * 109.47125 * 60.00031 * 1 2 3 26 26 H 1.09005 * 109.46817 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47512 * 239.99975 * 2 1 3 28 28 H 1.09002 * 109.47156 * 119.99429 * 2 1 3 29 29 H 1.09008 * 109.50055 * 63.28396 * 5 3 2 30 30 H 1.08994 * 109.54239 * 303.17733 * 5 3 2 31 31 H 1.08997 * 109.47350 * 299.99333 * 9 7 6 32 32 H 1.09002 * 109.47707 * 60.00202 * 9 7 6 33 33 H 1.09005 * 109.47045 * 179.97438 * 9 7 6 34 34 H 1.09004 * 109.47314 * 56.54308 * 10 7 6 35 35 H 1.08999 * 109.47200 * 296.54379 * 10 7 6 36 36 H 0.96996 * 119.99997 * 180.02562 * 14 13 11 37 37 H 1.09004 * 109.50719 * 61.31764 * 19 6 5 38 38 H 1.09003 * 109.50994 * 181.44604 * 19 6 5 39 39 H 1.08994 * 109.46990 * 179.80533 * 22 20 19 40 40 H 1.09005 * 109.47061 * 299.80531 * 22 20 19 41 41 H 1.08995 * 109.46846 * 59.80428 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6045 1.9825 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0476 7 6 5.5140 2.8815 -0.2211 8 1 5.9973 2.3631 0.6069 9 6 5.8953 2.2044 -1.5390 10 6 5.9724 4.3410 -0.2463 11 6 7.4756 4.3939 -0.3391 12 1 8.0519 3.4816 -0.2936 13 6 8.1153 5.6069 -0.4818 14 7 7.4136 6.7179 -0.5375 15 14 9.9786 5.6725 -0.5960 16 1 10.3913 5.5687 -2.0187 17 1 10.4641 6.9577 -0.0323 18 1 10.5617 4.5433 0.1721 19 6 3.6538 3.4536 1.2209 20 6 2.1271 3.4306 1.3332 21 1 1.8268 3.8408 2.2974 22 6 1.5186 4.2709 0.2087 23 8 1.6663 2.0811 1.2239 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.8529 1.0109 -1.0833 30 1 3.9995 0.8592 0.6845 31 1 5.5688 1.1646 -1.5211 32 1 5.4120 2.7228 -2.3672 33 1 6.9770 2.2437 -1.6680 34 1 5.6468 4.8399 0.6665 35 1 5.5372 4.8437 -1.1100 36 1 7.8636 7.5712 -0.6382 37 1 4.0883 2.8998 2.0532 38 1 4.0051 4.4851 1.2465 39 1 0.4317 4.2509 0.2876 40 1 1.8701 5.2993 0.2925 41 1 1.8205 3.8612 -0.7552 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411257218.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:16 Heat of formation + Delta-G solvation = -77.711500 kcal Electronic energy + Delta-G solvation = -18576.506448 eV Core-core repulsion = 15876.029798 eV Total energy + Delta-G solvation = -2700.476649 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.08897 -37.93171 -35.26770 -35.03768 -32.84842 -31.81775 -29.43708 -28.80728 -26.22848 -25.73845 -23.90900 -22.75439 -20.85335 -20.41140 -18.71940 -17.50876 -17.30568 -16.61922 -15.91544 -15.83001 -15.65312 -15.25402 -14.64526 -14.58485 -14.42135 -14.15301 -13.46503 -13.20265 -13.09978 -12.96038 -12.89347 -12.74985 -12.68525 -12.55407 -12.19525 -12.02267 -11.97923 -11.81650 -11.70445 -11.29449 -11.06812 -11.03470 -10.52800 -10.42160 -9.22022 -8.18704 -6.28191 1.39957 1.40700 1.51408 2.39980 2.77570 2.95682 3.15016 3.80942 3.90113 4.02170 4.11123 4.21190 4.27720 4.33824 4.41854 4.46267 4.51805 4.58056 4.65014 4.74566 4.82146 4.88922 4.94989 5.00121 5.03862 5.13695 5.13924 5.19747 5.30517 5.39878 5.40660 5.47472 5.50215 5.68164 5.77325 6.07152 6.21562 6.31437 6.34276 6.87153 7.39847 8.93357 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041640 B = 0.005518 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.276605 B = 5072.796147 C = 5494.324563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.091 3.909 4 H 0.067 0.933 5 C 0.020 3.980 6 N -0.534 5.534 7 C 0.094 3.906 8 H 0.015 0.985 9 C -0.123 4.123 10 C 0.044 3.956 11 C -0.533 4.533 12 H 0.059 0.941 13 C 0.004 3.996 14 N -0.931 5.931 15 Si 0.961 3.039 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.265 1.265 19 C 0.024 3.976 20 C 0.096 3.904 21 H 0.117 0.883 22 C -0.165 4.165 23 O -0.385 6.385 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.054 0.946 34 H -0.010 1.010 35 H -0.004 1.004 36 H 0.262 0.738 37 H 0.025 0.975 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.029 -11.638 0.721 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.149 4.149 3 C 0.034 3.966 4 H 0.084 0.916 5 C -0.108 4.108 6 N -0.259 5.259 7 C -0.014 4.014 8 H 0.033 0.967 9 C -0.180 4.180 10 C 0.007 3.993 11 C -0.572 4.572 12 H 0.077 0.923 13 C -0.194 4.194 14 N -0.571 5.571 15 Si 0.785 3.215 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.189 1.189 19 C -0.104 4.104 20 C 0.038 3.962 21 H 0.135 0.865 22 C -0.223 4.223 23 O -0.304 6.304 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.111 0.889 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.047 0.953 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.008 0.992 35 H 0.014 0.986 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.332 -11.289 0.462 16.726 hybrid contribution 1.759 0.408 0.540 1.885 sum -10.573 -10.882 1.003 15.206 Atomic orbital electron populations 1.21661 0.94374 1.02175 1.01869 1.21544 0.97363 0.92743 1.03285 1.22319 0.91966 0.94949 0.87398 0.91559 1.22946 0.96510 0.89261 1.02054 1.62264 1.12899 1.17416 1.33333 1.21589 0.85344 0.97636 0.96819 0.96686 1.21681 1.01250 0.99093 0.95998 1.18948 0.94580 0.90884 0.94896 1.21562 0.93022 0.92885 1.49710 0.92285 1.25885 1.03265 0.95356 0.94915 1.70102 1.37387 0.98374 1.51273 0.85513 0.79720 0.77605 0.78616 1.19730 1.20921 1.18927 1.22767 0.97167 1.00225 0.90273 1.22270 0.90721 0.82743 1.00487 0.86538 1.22172 1.00885 0.99945 0.99264 1.87963 1.76851 1.26153 1.39461 0.93203 0.92551 0.91325 0.88917 0.91650 0.88518 0.95303 0.91540 0.93200 0.92674 0.99196 0.98576 0.92883 0.95661 0.91051 0.91016 0.92208 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.81 71.98 0.71 -1.80 16 2 C -0.11 -2.20 5.64 30.59 0.17 -2.02 16 3 C 0.09 2.36 2.40 30.63 0.07 2.43 16 4 H 0.07 1.75 6.50 -2.39 -0.02 1.73 16 5 C 0.02 0.60 4.51 86.31 0.39 0.99 16 6 N -0.53 -19.62 3.96 -869.98 -3.45 -23.07 16 7 C 0.09 3.99 2.11 44.91 0.09 4.09 16 8 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 9 C -0.12 -4.62 8.61 71.98 0.62 -4.00 16 10 C 0.04 2.35 4.36 29.85 0.13 2.48 16 11 C -0.53 -30.13 8.29 25.60 0.21 -29.91 16 12 H 0.06 3.21 7.15 -2.91 -0.02 3.19 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 15 Si 0.96 44.25 29.54 68.60 2.03 46.28 16 16 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 18 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 19 C 0.02 0.87 4.77 86.31 0.41 1.28 16 20 C 0.10 2.79 3.92 30.63 0.12 2.91 16 21 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 22 C -0.17 -4.59 8.89 71.98 0.64 -3.95 16 23 O -0.38 -11.07 9.83 -148.98 -1.46 -12.53 16 24 H 0.05 0.99 7.83 -2.39 -0.02 0.97 16 25 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 2.60 6.10 -2.38 -0.01 2.59 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.07 2.02 6.29 -2.39 -0.02 2.01 16 32 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.05 2.19 6.95 -2.38 -0.02 2.18 16 34 H -0.01 -0.58 6.20 -2.39 -0.01 -0.59 16 35 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 36 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 37 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.07 2.91 6.14 -2.39 -0.01 2.89 16 39 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 41 H 0.06 1.79 6.13 -2.39 -0.01 1.78 16 Total: -1.00 -63.42 312.01 2.40 -61.02 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.97 Total: 11.51 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: 4.03 Total: -26.83 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: -3.16 Total: -79.45 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -1.46 Total: -12.53 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -63.42 2.40 -61.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257218.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.692 kcal (2) G-P(sol) polarization free energy of solvation -63.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds