Wall clock time and date at job start Sun Mar 29 2020 22:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47407 * 2 1 4 4 H 1.08996 * 109.50246 * 304.91100 * 3 2 1 5 5 C 1.53090 * 109.54155 * 184.80300 * 3 2 1 6 6 N 1.47018 * 109.25790 * 183.19277 * 5 3 2 7 7 C 1.46904 * 111.00027 * 182.38964 * 6 5 3 8 8 H 1.08996 * 109.46706 * 55.71465 * 7 6 5 9 9 C 1.52999 * 109.46792 * 175.70935 * 7 6 5 10 10 C 1.53000 * 109.47245 * 295.71068 * 7 6 5 11 11 C 1.50698 * 109.46918 * 175.96421 * 10 7 6 12 12 H 1.08003 * 120.00208 * 354.90124 * 11 10 7 13 13 C 1.37873 * 119.99974 * 174.90234 * 11 10 7 14 14 N 1.31515 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00088 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47364 * 119.99996 * 15 13 11 18 18 H 1.48500 * 109.47059 * 239.99724 * 15 13 11 19 19 C 1.47018 * 110.75320 * 58.61660 * 6 5 3 20 20 C 1.53102 * 109.25479 * 301.38612 * 19 6 5 21 21 H 1.08993 * 109.50709 * 296.91062 * 20 19 6 22 22 C 1.53001 * 109.50349 * 176.78107 * 20 19 6 23 23 O 1.43016 * 109.26019 * 56.84885 * 20 19 6 24 24 H 1.09001 * 109.46955 * 59.99913 * 1 2 3 25 25 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 300.00367 * 1 2 3 27 27 H 1.09002 * 109.47097 * 239.99633 * 2 1 3 28 28 H 1.09001 * 109.46955 * 120.00087 * 2 1 3 29 29 H 1.09005 * 109.50892 * 63.26099 * 5 3 2 30 30 H 1.09003 * 109.51143 * 303.12552 * 5 3 2 31 31 H 1.09004 * 109.47315 * 60.00721 * 9 7 6 32 32 H 1.09002 * 109.47089 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47654 * 300.00133 * 9 7 6 34 34 H 1.08995 * 109.47379 * 295.96437 * 10 7 6 35 35 H 1.09000 * 109.47091 * 55.96257 * 10 7 6 36 36 H 0.96997 * 120.00476 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.50575 * 61.31720 * 19 6 5 38 38 H 1.08994 * 109.50801 * 181.44679 * 19 6 5 39 39 H 1.08994 * 109.47159 * 60.00210 * 22 20 19 40 40 H 1.08998 * 109.47026 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47445 * 299.99964 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9816 -0.8425 5 6 3.5662 1.4460 -0.1208 6 7 4.0556 2.8301 -0.0432 7 6 5.5139 2.8831 -0.2120 8 1 5.7886 2.4029 -1.1512 9 6 5.9721 4.3428 -0.2325 10 6 6.1889 2.1529 0.9508 11 6 7.6788 2.1213 0.7270 12 1 8.0948 2.5025 -0.1939 13 6 8.5109 1.6055 1.6978 14 7 8.0044 1.1417 2.8194 15 14 10.3579 1.5669 1.4207 16 1 10.6708 2.1441 0.0887 17 1 11.0337 2.3627 2.4768 18 1 10.8374 0.1625 1.4761 19 6 3.6488 3.4563 1.2232 20 6 2.1217 3.4326 1.3305 21 1 1.6910 4.0295 0.5267 22 6 1.6955 4.0100 2.6817 23 8 1.6621 2.0826 1.2218 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8567 1.0103 -1.0768 30 1 3.9971 0.8615 0.6922 31 1 5.6975 4.8231 0.7066 32 1 7.0542 4.3822 -0.3583 33 1 5.4913 4.8630 -1.0609 34 1 5.9725 2.6754 1.8826 35 1 5.8084 1.1332 1.0093 36 1 8.5898 0.7792 3.5026 37 1 4.0809 2.9039 2.0577 38 1 3.9995 4.4880 1.2483 39 1 2.0494 5.0375 2.7656 40 1 0.6083 3.9933 2.7573 41 1 2.1252 3.4111 3.4847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411257219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:18 Heat of formation + Delta-G solvation = -63.419761 kcal Electronic energy + Delta-G solvation = -18605.303647 eV Core-core repulsion = 15905.446734 eV Total energy + Delta-G solvation = -2699.856913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.61676 -36.47919 -34.30194 -32.90687 -31.27524 -30.73418 -27.71926 -26.77329 -25.52880 -23.28580 -22.58628 -21.30198 -20.36521 -18.63699 -16.61621 -16.32521 -15.64250 -14.91277 -14.62543 -14.40945 -13.89478 -13.68074 -13.56705 -13.15901 -12.68110 -12.28321 -12.14255 -12.12669 -11.87554 -11.76743 -11.40497 -11.07010 -10.99642 -10.87669 -10.82909 -10.72818 -10.56984 -10.32463 -10.10441 -9.81559 -9.61398 -9.15187 -9.06994 -8.37542 -7.52028 -6.02742 -4.05080 3.28420 3.36317 3.39967 3.92523 4.36989 4.47093 4.98375 5.17091 5.26487 5.29923 5.32936 5.42869 5.51660 5.54863 5.69236 5.78179 5.79258 5.91481 5.98957 6.02123 6.08177 6.15121 6.21568 6.24573 6.28603 6.35721 6.41422 6.44380 6.53692 6.79508 6.91930 6.99400 7.46537 7.52928 7.57883 7.67938 7.82839 7.97872 8.40554 9.01362 9.58716 11.08408 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.006127 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.169824 B = 4568.765371 C = 4863.969389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.097 3.903 4 H 0.059 0.941 5 C 0.021 3.979 6 N -0.537 5.537 7 C 0.079 3.921 8 H 0.069 0.931 9 C -0.128 4.128 10 C -0.003 4.003 11 C -0.514 4.514 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.890 3.110 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.019 3.981 20 C 0.091 3.909 21 H 0.058 0.942 22 C -0.143 4.143 23 O -0.381 6.381 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.022 0.978 35 H 0.013 0.987 36 H 0.259 0.741 37 H 0.053 0.947 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.845 2.536 -4.304 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.039 3.961 4 H 0.077 0.923 5 C -0.107 4.107 6 N -0.261 5.261 7 C -0.028 4.028 8 H 0.087 0.913 9 C -0.186 4.186 10 C -0.041 4.041 11 C -0.552 4.552 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.534 5.534 15 Si 0.718 3.282 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.110 4.110 20 C 0.033 3.967 21 H 0.076 0.924 22 C -0.200 4.200 23 O -0.300 6.300 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.031 0.969 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.110 2.643 -4.394 14.077 hybrid contribution 1.744 -0.459 0.453 1.860 sum -11.365 2.185 -3.942 12.226 Atomic orbital electron populations 1.21686 0.95467 1.01103 1.02051 1.21521 0.96359 0.94728 1.02826 1.22143 0.93586 0.93353 0.86981 0.92341 1.22742 0.94663 0.91129 1.02200 1.62639 1.14411 1.16124 1.32879 1.21855 0.83850 0.96785 1.00305 0.91310 1.21719 1.01467 0.95441 0.99955 1.19683 0.95668 0.95257 0.93481 1.21181 0.91589 1.40058 1.02419 0.92474 1.25021 0.98730 0.95441 0.95214 1.69977 1.34994 1.41463 1.06990 0.86567 0.85761 0.77672 0.78207 1.19691 1.21038 1.21066 1.22809 0.94761 1.00804 0.92577 1.22120 0.93488 0.83415 0.97634 0.92419 1.21726 1.01565 1.00594 0.96140 1.87916 1.76597 1.26310 1.39206 0.93139 0.93062 0.92062 0.90691 0.91084 0.90501 0.92903 0.93543 0.91480 0.94230 0.95951 0.96908 0.93085 0.92879 0.90030 0.91188 0.92148 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.81 37.16 0.36 -1.26 16 2 C -0.12 -1.50 5.65 -26.73 -0.15 -1.65 16 3 C 0.10 1.48 2.80 -26.69 -0.07 1.40 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 5 C 0.02 0.37 4.59 -3.71 -0.02 0.36 16 6 N -0.54 -9.99 4.72 -226.32 -1.07 -11.06 16 7 C 0.08 1.66 2.40 -67.71 -0.16 1.50 16 8 H 0.07 1.46 8.13 -51.93 -0.42 1.04 16 9 C -0.13 -2.46 8.78 37.16 0.33 -2.14 16 10 C 0.00 -0.07 3.73 -27.88 -0.10 -0.18 16 11 C -0.51 -14.27 8.30 -34.44 -0.29 -14.56 16 12 H 0.06 1.54 7.19 -52.48 -0.38 1.17 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 15 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 16 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 C 0.02 0.34 4.15 -3.71 -0.02 0.32 16 20 C 0.09 1.40 3.43 -26.68 -0.09 1.30 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.14 -1.83 9.57 37.16 0.36 -1.47 16 23 O -0.38 -6.24 9.65 -35.23 -0.34 -6.58 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.74 7.82 -51.93 -0.41 0.33 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.05 1.08 6.46 -51.93 -0.34 0.75 16 31 H 0.05 0.88 6.37 -51.93 -0.33 0.54 16 32 H 0.07 1.35 6.99 -51.93 -0.36 0.99 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.02 0.62 6.67 -51.93 -0.35 0.27 16 35 H 0.01 0.35 6.37 -51.93 -0.33 0.02 16 36 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 37 H 0.05 1.10 6.52 -51.93 -0.34 0.76 16 38 H 0.08 1.39 6.20 -51.93 -0.32 1.06 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -29.83 313.76 -8.28 -38.11 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.36 Total: -0.75 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 0.05 Total: -14.85 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.33 Total: -37.23 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.34 Total: -6.58 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.83 -8.28 -38.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.310 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds