Wall clock time and date at job start Sun Mar 29 2020 22:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47407 * 2 1 4 4 H 1.08996 * 109.50246 * 304.91100 * 3 2 1 5 5 C 1.53090 * 109.54155 * 184.80300 * 3 2 1 6 6 N 1.47018 * 109.25790 * 183.19277 * 5 3 2 7 7 C 1.46904 * 111.00027 * 182.38964 * 6 5 3 8 8 H 1.08996 * 109.46706 * 55.71465 * 7 6 5 9 9 C 1.52999 * 109.46792 * 175.70935 * 7 6 5 10 10 C 1.53000 * 109.47245 * 295.71068 * 7 6 5 11 11 C 1.50698 * 109.46918 * 175.96421 * 10 7 6 12 12 H 1.08003 * 120.00208 * 354.90124 * 11 10 7 13 13 C 1.37873 * 119.99974 * 174.90234 * 11 10 7 14 14 N 1.31515 * 120.00156 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00088 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47184 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.47364 * 119.99996 * 15 13 11 18 18 H 1.48500 * 109.47059 * 239.99724 * 15 13 11 19 19 C 1.47018 * 110.75320 * 58.61660 * 6 5 3 20 20 C 1.53102 * 109.25479 * 301.38612 * 19 6 5 21 21 H 1.08993 * 109.50709 * 296.91062 * 20 19 6 22 22 C 1.53001 * 109.50349 * 176.78107 * 20 19 6 23 23 O 1.43016 * 109.26019 * 56.84885 * 20 19 6 24 24 H 1.09001 * 109.46955 * 59.99913 * 1 2 3 25 25 H 1.09000 * 109.47065 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47097 * 300.00367 * 1 2 3 27 27 H 1.09002 * 109.47097 * 239.99633 * 2 1 3 28 28 H 1.09001 * 109.46955 * 120.00087 * 2 1 3 29 29 H 1.09005 * 109.50892 * 63.26099 * 5 3 2 30 30 H 1.09003 * 109.51143 * 303.12552 * 5 3 2 31 31 H 1.09004 * 109.47315 * 60.00721 * 9 7 6 32 32 H 1.09002 * 109.47089 * 180.02562 * 9 7 6 33 33 H 1.08996 * 109.47654 * 300.00133 * 9 7 6 34 34 H 1.08995 * 109.47379 * 295.96437 * 10 7 6 35 35 H 1.09000 * 109.47091 * 55.96257 * 10 7 6 36 36 H 0.96997 * 120.00476 * 180.02562 * 14 13 11 37 37 H 1.09005 * 109.50575 * 61.31720 * 19 6 5 38 38 H 1.08994 * 109.50801 * 181.44679 * 19 6 5 39 39 H 1.08994 * 109.47159 * 60.00210 * 22 20 19 40 40 H 1.08998 * 109.47026 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.47445 * 299.99964 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6070 1.9816 -0.8425 5 6 3.5662 1.4460 -0.1208 6 7 4.0556 2.8301 -0.0432 7 6 5.5139 2.8831 -0.2120 8 1 5.7886 2.4029 -1.1512 9 6 5.9721 4.3428 -0.2325 10 6 6.1889 2.1529 0.9508 11 6 7.6788 2.1213 0.7270 12 1 8.0948 2.5025 -0.1939 13 6 8.5109 1.6055 1.6978 14 7 8.0044 1.1417 2.8194 15 14 10.3579 1.5669 1.4207 16 1 10.6708 2.1441 0.0887 17 1 11.0337 2.3627 2.4768 18 1 10.8374 0.1625 1.4761 19 6 3.6488 3.4563 1.2232 20 6 2.1217 3.4326 1.3305 21 1 1.6910 4.0295 0.5267 22 6 1.6955 4.0100 2.6817 23 8 1.6621 2.0826 1.2218 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8567 1.0103 -1.0768 30 1 3.9971 0.8615 0.6922 31 1 5.6975 4.8231 0.7066 32 1 7.0542 4.3822 -0.3583 33 1 5.4913 4.8630 -1.0609 34 1 5.9725 2.6754 1.8826 35 1 5.8084 1.1332 1.0093 36 1 8.5898 0.7792 3.5026 37 1 4.0809 2.9039 2.0577 38 1 3.9995 4.4880 1.2483 39 1 2.0494 5.0375 2.7656 40 1 0.6083 3.9933 2.7573 41 1 2.1252 3.4111 3.4847 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411257219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:54:18 Heat of formation + Delta-G solvation = -82.535145 kcal Electronic energy + Delta-G solvation = -18606.132553 eV Core-core repulsion = 15905.446734 eV Total energy + Delta-G solvation = -2700.685818 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.01207 -38.03277 -35.44585 -34.96706 -32.69869 -32.16626 -29.37790 -28.35104 -26.94371 -25.17236 -23.97900 -22.50318 -21.69212 -20.29605 -18.65575 -17.65066 -17.10918 -16.64115 -16.30205 -15.66774 -15.42186 -15.15426 -14.89333 -14.65136 -14.17845 -13.88715 -13.76036 -13.31221 -13.13814 -13.03063 -12.85861 -12.77435 -12.71458 -12.42780 -12.29422 -12.05476 -11.93328 -11.79453 -11.67518 -11.54432 -11.31809 -11.06385 -10.58626 -10.45597 -9.20094 -8.22240 -6.33404 1.37014 1.37502 1.50732 2.37641 2.72421 2.93660 3.10677 3.75659 3.96838 4.02567 4.13692 4.16072 4.25805 4.39039 4.40596 4.47857 4.50885 4.58635 4.68145 4.73097 4.80734 4.84990 4.93183 5.01229 5.07637 5.09027 5.11504 5.18282 5.25891 5.31016 5.37875 5.46180 5.46900 5.53259 5.70940 5.97990 6.12602 6.31171 6.32730 6.83372 7.35617 8.89400 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027684 B = 0.006127 C = 0.005755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.169824 B = 4568.765371 C = 4863.969389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.101 3.899 4 H 0.075 0.925 5 C 0.021 3.979 6 N -0.526 5.526 7 C 0.086 3.914 8 H 0.068 0.932 9 C -0.120 4.120 10 C 0.011 3.989 11 C -0.528 4.528 12 H 0.065 0.935 13 C -0.001 4.001 14 N -0.937 5.937 15 Si 0.963 3.037 16 H -0.258 1.258 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.021 3.979 20 C 0.092 3.908 21 H 0.077 0.923 22 C -0.138 4.138 23 O -0.394 6.394 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.091 0.909 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.013 0.987 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.069 0.931 34 H -0.009 1.009 35 H -0.020 1.020 36 H 0.262 0.738 37 H 0.011 0.989 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.465 3.511 -5.905 15.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C 0.043 3.957 4 H 0.093 0.907 5 C -0.108 4.108 6 N -0.249 5.249 7 C -0.022 4.022 8 H 0.086 0.914 9 C -0.178 4.178 10 C -0.028 4.028 11 C -0.566 4.566 12 H 0.083 0.917 13 C -0.199 4.199 14 N -0.577 5.577 15 Si 0.788 3.212 16 H -0.182 1.182 17 H -0.205 1.205 18 H -0.207 1.207 19 C -0.107 4.107 20 C 0.035 3.965 21 H 0.095 0.905 22 C -0.196 4.196 23 O -0.314 6.314 24 H 0.082 0.918 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.032 0.968 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.010 0.990 35 H -0.002 1.002 36 H 0.070 0.930 37 H 0.030 0.970 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -13.744 3.626 -6.008 15.431 hybrid contribution 1.915 -0.787 0.965 2.284 sum -11.829 2.839 -5.042 13.169 Atomic orbital electron populations 1.21635 0.93653 1.02223 1.02130 1.21561 0.97880 0.93150 1.02777 1.22239 0.91347 0.94925 0.87140 0.90665 1.22827 0.96763 0.90065 1.01135 1.62713 1.12524 1.16588 1.33040 1.21704 0.85124 0.97492 0.97894 0.91378 1.21629 1.00924 0.94127 1.01100 1.19508 0.95448 0.93618 0.94186 1.21588 0.92718 1.39679 1.02659 0.91698 1.25980 1.04100 0.94943 0.94835 1.70127 1.36961 1.42537 1.08095 0.85418 0.79267 0.77783 0.78722 1.18181 1.20498 1.20695 1.22862 0.96914 1.00403 0.90549 1.22252 0.91223 0.83388 0.99665 0.90541 1.21740 1.02684 1.01134 0.94035 1.87926 1.76414 1.27019 1.39993 0.91801 0.91489 0.93158 0.89057 0.92904 0.89512 0.96831 0.93693 0.92594 0.91243 0.99039 1.00223 0.92968 0.97023 0.89072 0.89234 0.90275 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.81 71.98 0.71 -2.11 16 2 C -0.12 -2.88 5.65 30.59 0.17 -2.71 16 3 C 0.10 2.98 2.80 30.62 0.09 3.07 16 4 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 5 C 0.02 0.74 4.59 86.31 0.40 1.14 16 6 N -0.53 -19.55 4.72 -869.95 -4.11 -23.66 16 7 C 0.09 3.62 2.40 44.91 0.11 3.73 16 8 H 0.07 2.89 8.13 -2.39 -0.02 2.87 16 9 C -0.12 -4.50 8.78 71.98 0.63 -3.87 16 10 C 0.01 0.57 3.73 29.85 0.11 0.68 16 11 C -0.53 -29.90 8.30 25.60 0.21 -29.69 16 12 H 0.06 3.50 7.19 -2.91 -0.02 3.48 16 13 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 14 N -0.94 -58.14 13.29 21.45 0.28 -57.86 16 15 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 C 0.02 0.76 4.15 86.31 0.36 1.12 16 20 C 0.09 2.72 3.43 30.63 0.10 2.83 16 21 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 22 C -0.14 -3.38 9.57 71.98 0.69 -2.69 16 23 O -0.39 -12.69 9.65 -148.98 -1.44 -14.12 16 24 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.89 8.14 -2.38 -0.02 2.87 16 30 H 0.01 0.59 6.46 -2.39 -0.02 0.57 16 31 H 0.04 1.67 6.37 -2.38 -0.02 1.65 16 32 H 0.06 2.20 6.99 -2.39 -0.02 2.19 16 33 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 34 H -0.01 -0.52 6.67 -2.39 -0.02 -0.53 16 35 H -0.02 -1.22 6.37 -2.39 -0.02 -1.23 16 36 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 37 H 0.01 0.51 6.52 -2.38 -0.02 0.49 16 38 H 0.09 3.06 6.20 -2.39 -0.01 3.04 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -65.97 313.76 1.77 -64.20 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.97 Total: 12.97 kcal Atomic # 6 Polarization: -32.15 SS G_CDS: 4.04 Total: -28.11 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -3.82 Total: -81.52 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -1.44 Total: -14.12 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -65.97 1.77 -64.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411257219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.336 kcal (2) G-P(sol) polarization free energy of solvation -65.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds