Wall clock time and date at job start Sun Mar 29 2020 22:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 C 1.53000 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.50505 * 55.09154 * 4 3 2 6 6 C 1.53090 * 109.50799 * 175.22036 * 4 3 2 7 7 N 1.47099 * 109.28585 * 176.78900 * 6 4 3 8 8 C 1.46899 * 111.06461 * 177.62986 * 7 6 4 9 9 H 1.09004 * 109.47081 * 174.09229 * 8 7 6 10 10 C 1.53004 * 109.47195 * 54.09568 * 8 7 6 11 11 C 1.52997 * 109.46790 * 294.09436 * 8 7 6 12 12 C 1.50695 * 109.47346 * 296.02320 * 11 8 7 13 13 H 1.08003 * 119.99745 * 4.86191 * 12 11 8 14 14 C 1.37879 * 120.00382 * 184.86489 * 12 11 8 15 15 N 1.31509 * 119.99643 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47218 * 89.99791 * 16 14 12 18 18 H 1.48504 * 109.46593 * 210.00081 * 16 14 12 19 19 H 1.48504 * 109.46836 * 329.99463 * 16 14 12 20 20 C 1.47019 * 110.70152 * 301.41063 * 7 6 4 21 21 C 1.53102 * 109.29096 * 58.59153 * 20 7 6 22 22 O 1.43011 * 109.50943 * 295.00594 * 4 3 2 23 23 H 1.09004 * 109.46638 * 299.99885 * 1 2 3 24 24 H 1.09002 * 109.46974 * 59.99637 * 1 2 3 25 25 H 1.08991 * 109.47463 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47161 * 240.00148 * 2 1 3 27 27 H 1.08999 * 109.47245 * 120.00820 * 2 1 3 28 28 H 1.09004 * 109.46652 * 60.00696 * 3 2 1 29 29 H 1.08991 * 109.47284 * 300.00644 * 3 2 1 30 30 H 1.09000 * 109.50773 * 296.72095 * 6 4 3 31 31 H 1.09008 * 109.50719 * 56.80787 * 6 4 3 32 32 H 1.09000 * 109.46767 * 180.02562 * 10 8 7 33 33 H 1.09004 * 109.46829 * 299.99815 * 10 8 7 34 34 H 1.08998 * 109.47296 * 60.00260 * 10 8 7 35 35 H 1.08994 * 109.47188 * 56.03007 * 11 8 7 36 36 H 1.09008 * 109.46739 * 176.02403 * 11 8 7 37 37 H 0.97004 * 120.00181 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.50771 * 298.63743 * 20 7 6 39 39 H 1.09003 * 109.50864 * 178.54733 * 20 7 6 40 40 H 1.09006 * 109.50516 * 63.06588 * 21 20 7 41 41 H 1.09003 * 109.50527 * 183.14602 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9343 0.8542 -0.8417 6 6 4.0814 2.8803 -0.1196 7 7 5.5503 2.8818 -0.0411 8 6 6.0867 4.2390 -0.2087 9 1 7.1639 4.2272 -0.0422 10 6 5.4247 5.1775 0.8022 11 6 5.7953 4.7307 -1.6279 12 6 6.5271 3.8641 -2.6200 13 1 7.0750 2.9979 -2.2794 14 6 6.4973 4.1769 -3.9626 15 7 5.8298 5.2314 -4.3773 16 14 7.4039 3.1022 -5.1924 17 1 6.4971 2.0304 -5.6761 18 1 7.8477 3.9314 -6.3416 19 1 8.5878 2.4906 -4.5369 20 6 6.0036 2.2890 1.2257 21 6 5.4729 0.8568 1.3324 22 8 4.0471 0.8727 1.2226 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.6767 1.9563 -0.8898 30 1 3.7679 3.2994 -1.0757 31 1 3.6725 3.4812 0.6928 32 1 5.8224 6.1847 0.6774 33 1 4.3475 5.1894 0.6357 34 1 5.6323 4.8272 1.8133 35 1 4.7235 4.6758 -1.8186 36 1 6.1302 5.7630 -1.7307 37 1 5.8091 5.4517 -5.3217 38 1 5.6260 2.8802 2.0599 39 1 7.0933 2.2763 1.2523 40 1 5.8932 0.2521 0.5287 41 1 5.7599 0.4332 2.2948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411417698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:07 Heat of formation + Delta-G solvation = -62.769804 kcal Electronic energy + Delta-G solvation = -18497.442502 eV Core-core repulsion = 15797.613773 eV Total energy + Delta-G solvation = -2699.828729 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.51052 -36.48735 -34.78485 -32.80098 -31.04019 -30.78826 -27.34457 -27.20129 -25.33195 -23.30024 -22.51906 -21.04976 -20.36612 -18.70567 -16.34513 -16.15350 -15.93924 -14.78433 -14.67883 -14.47118 -14.37527 -14.06324 -13.58107 -13.21683 -12.88736 -12.49515 -12.14620 -12.07247 -11.75893 -11.47773 -11.41067 -11.26571 -10.99601 -10.90241 -10.67627 -10.59084 -10.52991 -10.40562 -10.01262 -9.88413 -9.37303 -9.06099 -8.96175 -8.27421 -7.52938 -5.90146 -3.88149 3.38242 3.44237 3.48376 4.04030 4.41283 4.55475 4.94520 5.12744 5.20319 5.33358 5.44250 5.47786 5.51298 5.57207 5.57723 5.76025 5.77907 5.83458 5.87809 5.93580 5.96616 6.01241 6.06090 6.11982 6.20662 6.25240 6.37715 6.44035 6.47238 6.57129 6.67756 6.95446 7.47974 7.50741 7.63791 7.85731 7.97182 8.10952 8.57229 9.18559 9.73865 11.21813 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.007069 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.266550 B = 3959.942409 C = 4544.927366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.110 4.110 4 C 0.093 3.907 5 H 0.067 0.933 6 C 0.026 3.974 7 N -0.509 5.509 8 C 0.086 3.914 9 H 0.070 0.930 10 C -0.184 4.184 11 C 0.030 3.970 12 C -0.491 4.491 13 H 0.061 0.939 14 C 0.050 3.950 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.275 1.275 20 C 0.014 3.986 21 C 0.067 3.933 22 O -0.388 6.388 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.015 0.985 36 H 0.022 0.978 37 H 0.257 0.743 38 H 0.033 0.967 39 H 0.078 0.922 40 H 0.056 0.944 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.735 -7.369 10.835 14.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.085 0.915 6 C -0.102 4.102 7 N -0.233 5.233 8 C -0.022 4.022 9 H 0.089 0.911 10 C -0.243 4.243 11 C -0.007 4.007 12 C -0.530 4.530 13 H 0.079 0.921 14 C -0.149 4.149 15 N -0.545 5.545 16 Si 0.718 3.282 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.200 1.200 20 C -0.115 4.115 21 C -0.010 4.010 22 O -0.307 6.307 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.705 -7.634 10.427 14.125 hybrid contribution 0.431 0.179 -0.304 0.557 sum -5.273 -7.455 10.122 13.632 Atomic orbital electron populations 1.21780 0.96249 1.01231 1.01636 1.21459 0.95215 0.96790 1.02345 1.21603 0.93079 0.97466 1.02653 1.22222 0.93707 0.93589 0.86921 0.91541 1.22785 0.88983 0.96037 1.02402 1.62387 1.08002 1.22169 1.30768 1.21951 0.97788 0.84690 0.97732 0.91140 1.22514 1.01540 1.01101 0.99118 1.19193 0.97011 0.96232 0.88242 1.21182 1.30243 1.10502 0.91066 0.92065 1.25014 0.95980 0.95303 0.98590 1.69962 1.42897 1.26578 1.15020 0.86632 0.80146 0.80415 0.80987 1.20920 1.21584 1.20021 1.22773 1.00675 0.95864 0.92153 1.22574 0.81212 0.95861 1.01349 1.87879 1.20905 1.82287 1.39619 0.92945 0.92814 0.93065 0.92156 0.91477 0.91559 0.90390 0.88657 0.94799 0.92453 0.92839 0.94152 0.96717 0.95929 0.93302 0.94858 0.90390 0.92570 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.45 5.83 -26.73 -0.16 -1.60 16 3 C -0.11 -1.48 4.93 -26.73 -0.13 -1.61 16 4 C 0.09 1.50 2.81 -26.68 -0.07 1.42 16 5 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 6 C 0.03 0.47 4.09 -3.67 -0.02 0.46 16 7 N -0.51 -9.81 4.35 -226.25 -0.98 -10.79 16 8 C 0.09 1.77 2.27 -67.71 -0.15 1.62 16 9 H 0.07 1.47 8.05 -51.93 -0.42 1.05 16 10 C -0.18 -3.23 8.44 37.16 0.31 -2.92 16 11 C 0.03 0.77 4.35 -27.89 -0.12 0.65 16 12 C -0.49 -13.73 8.82 -34.44 -0.30 -14.03 16 13 H 0.06 1.72 7.72 -52.48 -0.40 1.31 16 14 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 16 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.01 0.22 5.38 -3.71 -0.02 0.20 16 21 C 0.07 0.97 7.01 37.21 0.26 1.24 16 22 O -0.39 -6.16 10.01 -35.23 -0.35 -6.52 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.84 7.82 -51.93 -0.41 0.43 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.10 1.93 6.30 -51.93 -0.33 1.61 16 31 H 0.03 0.60 6.38 -51.92 -0.33 0.26 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.94 6.39 -51.93 -0.33 0.61 16 34 H 0.04 0.64 6.72 -51.93 -0.35 0.29 16 35 H 0.01 0.39 6.33 -51.93 -0.33 0.06 16 36 H 0.02 0.61 8.14 -51.92 -0.42 0.19 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.03 0.52 6.71 -51.93 -0.35 0.18 16 39 H 0.08 1.18 8.09 -51.93 -0.42 0.76 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -29.82 316.17 -8.44 -38.25 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.45 Total: -1.91 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -0.13 Total: -14.40 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.25 Total: -37.21 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.35 Total: -6.52 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.82 -8.44 -38.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.516 kcal (2) G-P(sol) polarization free energy of solvation -29.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds