Wall clock time and date at job start Sun Mar 29 2020 22:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 C 1.53000 * 109.47171 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.50505 * 55.09154 * 4 3 2 6 6 C 1.53090 * 109.50799 * 175.22036 * 4 3 2 7 7 N 1.47099 * 109.28585 * 176.78900 * 6 4 3 8 8 C 1.46899 * 111.06461 * 177.62986 * 7 6 4 9 9 H 1.09004 * 109.47081 * 174.09229 * 8 7 6 10 10 C 1.53004 * 109.47195 * 54.09568 * 8 7 6 11 11 C 1.52997 * 109.46790 * 294.09436 * 8 7 6 12 12 C 1.50695 * 109.47346 * 296.02320 * 11 8 7 13 13 H 1.08003 * 119.99745 * 4.86191 * 12 11 8 14 14 C 1.37879 * 120.00382 * 184.86489 * 12 11 8 15 15 N 1.31509 * 119.99643 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47218 * 89.99791 * 16 14 12 18 18 H 1.48504 * 109.46593 * 210.00081 * 16 14 12 19 19 H 1.48504 * 109.46836 * 329.99463 * 16 14 12 20 20 C 1.47019 * 110.70152 * 301.41063 * 7 6 4 21 21 C 1.53102 * 109.29096 * 58.59153 * 20 7 6 22 22 O 1.43011 * 109.50943 * 295.00594 * 4 3 2 23 23 H 1.09004 * 109.46638 * 299.99885 * 1 2 3 24 24 H 1.09002 * 109.46974 * 59.99637 * 1 2 3 25 25 H 1.08991 * 109.47463 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47161 * 240.00148 * 2 1 3 27 27 H 1.08999 * 109.47245 * 120.00820 * 2 1 3 28 28 H 1.09004 * 109.46652 * 60.00696 * 3 2 1 29 29 H 1.08991 * 109.47284 * 300.00644 * 3 2 1 30 30 H 1.09000 * 109.50773 * 296.72095 * 6 4 3 31 31 H 1.09008 * 109.50719 * 56.80787 * 6 4 3 32 32 H 1.09000 * 109.46767 * 180.02562 * 10 8 7 33 33 H 1.09004 * 109.46829 * 299.99815 * 10 8 7 34 34 H 1.08998 * 109.47296 * 60.00260 * 10 8 7 35 35 H 1.08994 * 109.47188 * 56.03007 * 11 8 7 36 36 H 1.09008 * 109.46739 * 176.02403 * 11 8 7 37 37 H 0.97004 * 120.00181 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.50771 * 298.63743 * 20 7 6 39 39 H 1.09003 * 109.50864 * 178.54733 * 20 7 6 40 40 H 1.09006 * 109.50516 * 63.06588 * 21 20 7 41 41 H 1.09003 * 109.50527 * 183.14602 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 1 3.9343 0.8542 -0.8417 6 6 4.0814 2.8803 -0.1196 7 7 5.5503 2.8818 -0.0411 8 6 6.0867 4.2390 -0.2087 9 1 7.1639 4.2272 -0.0422 10 6 5.4247 5.1775 0.8022 11 6 5.7953 4.7307 -1.6279 12 6 6.5271 3.8641 -2.6200 13 1 7.0750 2.9979 -2.2794 14 6 6.4973 4.1769 -3.9626 15 7 5.8298 5.2314 -4.3773 16 14 7.4039 3.1022 -5.1924 17 1 6.4971 2.0304 -5.6761 18 1 7.8477 3.9314 -6.3416 19 1 8.5878 2.4906 -4.5369 20 6 6.0036 2.2890 1.2257 21 6 5.4729 0.8568 1.3324 22 8 4.0471 0.8727 1.2226 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5140 0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.6767 1.9563 -0.8898 30 1 3.7679 3.2994 -1.0757 31 1 3.6725 3.4812 0.6928 32 1 5.8224 6.1847 0.6774 33 1 4.3475 5.1894 0.6357 34 1 5.6323 4.8272 1.8133 35 1 4.7235 4.6758 -1.8186 36 1 6.1302 5.7630 -1.7307 37 1 5.8091 5.4517 -5.3217 38 1 5.6260 2.8802 2.0599 39 1 7.0933 2.2763 1.2523 40 1 5.8932 0.2521 0.5287 41 1 5.7599 0.4332 2.2948 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411417698.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:06 Heat of formation + Delta-G solvation = -81.159459 kcal Electronic energy + Delta-G solvation = -18498.239937 eV Core-core repulsion = 15797.613773 eV Total energy + Delta-G solvation = -2700.626164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.86854 -37.95298 -35.85988 -34.86512 -32.49919 -32.14763 -29.26075 -28.39114 -26.64429 -25.19082 -23.81707 -22.23948 -21.70736 -20.24774 -18.36894 -17.56226 -17.32230 -16.56888 -16.04608 -15.82231 -15.58532 -15.39104 -15.03536 -14.73634 -14.02258 -13.95968 -13.72470 -13.55021 -13.12716 -13.09791 -12.84410 -12.69099 -12.55890 -12.39815 -12.14376 -12.04424 -11.86991 -11.79217 -11.51042 -11.22216 -11.11906 -11.06725 -10.49233 -10.45282 -9.00790 -8.11214 -6.16206 1.41116 1.41721 1.52658 2.46236 2.81830 3.01239 3.24281 3.78984 4.03675 4.07079 4.14208 4.22050 4.24788 4.28883 4.36063 4.48886 4.50774 4.54254 4.71044 4.71811 4.78485 4.86462 4.91318 4.96540 5.02678 5.03475 5.10721 5.16645 5.23488 5.28850 5.39049 5.47296 5.50690 5.67752 5.87899 6.20809 6.26564 6.36207 6.47080 6.97841 7.49901 9.00854 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019157 B = 0.007069 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.266550 B = 3959.942409 C = 4544.927366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.107 4.107 4 C 0.100 3.900 5 H 0.049 0.951 6 C 0.032 3.968 7 N -0.532 5.532 8 C 0.094 3.906 9 H 0.067 0.933 10 C -0.173 4.173 11 C 0.037 3.963 12 C -0.500 4.500 13 H 0.058 0.942 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.956 3.044 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.015 3.985 21 C 0.066 3.934 22 O -0.389 6.389 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.049 0.951 34 H 0.064 0.936 35 H -0.007 1.007 36 H -0.005 1.005 37 H 0.259 0.741 38 H 0.042 0.958 39 H 0.087 0.913 40 H 0.050 0.950 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.650 -8.815 12.073 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.144 4.144 4 C 0.042 3.958 5 H 0.067 0.933 6 C -0.096 4.096 7 N -0.256 5.256 8 C -0.014 4.014 9 H 0.085 0.915 10 C -0.232 4.232 11 C 0.000 4.000 12 C -0.539 4.539 13 H 0.076 0.924 14 C -0.200 4.200 15 N -0.582 5.582 16 Si 0.782 3.218 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.113 4.113 21 C -0.011 4.011 22 O -0.308 6.308 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.012 0.988 36 H 0.013 0.987 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.068 0.932 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.616 -9.092 11.683 15.834 hybrid contribution 0.423 0.639 -0.666 1.015 sum -5.193 -8.453 11.017 14.825 Atomic orbital electron populations 1.21754 0.94656 1.02180 1.01989 1.21416 0.96576 0.95420 1.01982 1.21600 0.91217 0.98746 1.02881 1.22141 0.95247 0.91788 0.86661 0.93299 1.22690 0.88594 0.97453 1.00858 1.62275 1.08612 1.21342 1.33384 1.21654 0.97968 0.86364 0.95453 0.91464 1.22374 1.00940 1.00503 0.99386 1.19038 0.95167 0.94526 0.91303 1.21478 1.30021 1.10496 0.91885 0.92380 1.25849 0.96896 0.96606 1.00665 1.70089 1.44354 1.28265 1.15452 0.85586 0.79102 0.78648 0.78509 1.20396 1.21138 1.19052 1.22861 1.01323 0.96541 0.90552 1.22750 0.80378 0.94895 1.03042 1.87887 1.21793 1.82017 1.39095 0.92363 0.92715 0.91845 0.92594 0.91745 0.90946 0.90528 0.91840 0.94106 0.92252 0.93164 0.91693 0.98837 0.98688 0.93235 0.93966 0.89473 0.93211 0.85902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 9.91 71.98 0.71 -2.02 16 2 C -0.12 -2.63 5.83 30.59 0.18 -2.45 16 3 C -0.11 -2.78 4.93 30.59 0.15 -2.63 16 4 C 0.10 3.15 2.81 30.62 0.09 3.23 16 5 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 6 C 0.03 1.17 4.09 86.30 0.35 1.52 16 7 N -0.53 -20.24 4.35 -869.72 -3.78 -24.02 16 8 C 0.09 3.85 2.27 44.92 0.10 3.95 16 9 H 0.07 2.78 8.05 -2.38 -0.02 2.76 16 10 C -0.17 -5.92 8.44 71.98 0.61 -5.31 16 11 C 0.04 1.93 4.35 29.85 0.13 2.06 16 12 C -0.50 -28.47 8.82 25.60 0.23 -28.24 16 13 H 0.06 3.28 7.72 -2.91 -0.02 3.26 16 14 C 0.00 -0.24 5.46 84.66 0.46 0.23 16 15 N -0.94 -57.69 13.29 21.45 0.28 -57.40 16 16 Si 0.96 45.51 29.54 68.60 2.03 47.54 16 17 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 C 0.02 0.45 5.38 86.31 0.46 0.92 16 21 C 0.07 1.76 7.01 72.02 0.50 2.26 16 22 O -0.39 -11.60 10.01 -148.98 -1.49 -13.09 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.06 1.50 7.82 -2.39 -0.02 1.48 16 28 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.06 2.68 6.30 -2.39 -0.02 2.67 16 31 H 0.04 1.41 6.38 -2.38 -0.02 1.39 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.05 1.73 6.39 -2.38 -0.02 1.72 16 34 H 0.06 1.90 6.72 -2.39 -0.02 1.88 16 35 H -0.01 -0.37 6.33 -2.39 -0.02 -0.38 16 36 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 37 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 38 H 0.04 1.20 6.71 -2.39 -0.02 1.18 16 39 H 0.09 2.43 8.09 -2.39 -0.02 2.41 16 40 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -64.01 316.17 1.98 -62.03 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: 0.96 Total: 11.44 kcal Atomic # 6 Polarization: -30.47 SS G_CDS: 3.98 Total: -26.49 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -3.50 Total: -81.42 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -1.49 Total: -13.09 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -64.01 1.98 -62.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417698.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.132 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds