Wall clock time and date at job start Sun Mar 29 2020 22:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47052 * 2 1 4 4 C 1.53006 * 109.47052 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.54028 * 304.89265 * 4 3 2 6 6 C 1.53095 * 109.50626 * 184.78404 * 4 3 2 7 7 N 1.47018 * 109.25815 * 183.21771 * 6 4 3 8 8 C 1.46896 * 111.00167 * 182.39297 * 7 6 4 9 9 H 1.08999 * 109.47062 * 186.73588 * 8 7 6 10 10 C 1.53001 * 109.46920 * 306.73589 * 8 7 6 11 11 C 1.52998 * 109.47382 * 66.73173 * 8 7 6 12 12 C 1.50695 * 109.46827 * 62.74663 * 11 8 7 13 13 H 1.07999 * 120.00135 * 5.24019 * 12 11 8 14 14 C 1.37880 * 120.00066 * 185.23735 * 12 11 8 15 15 N 1.31517 * 119.99904 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00116 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47016 * 90.00145 * 16 14 12 18 18 H 1.48499 * 109.47076 * 210.00235 * 16 14 12 19 19 H 1.48506 * 109.47177 * 330.00305 * 16 14 12 20 20 C 1.47010 * 110.75057 * 58.61389 * 7 6 4 21 21 C 1.53099 * 109.26255 * 301.38429 * 20 7 6 22 22 O 1.43015 * 109.25750 * 56.84725 * 21 20 7 23 23 H 1.09005 * 109.46860 * 60.00079 * 1 2 3 24 24 H 1.08993 * 109.47270 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47102 * 300.00062 * 1 2 3 26 26 H 1.09005 * 109.46792 * 240.00056 * 2 1 3 27 27 H 1.08998 * 109.46826 * 120.00312 * 2 1 3 28 28 H 1.08998 * 109.47217 * 60.00009 * 3 2 1 29 29 H 1.09005 * 109.47224 * 299.99698 * 3 2 1 30 30 H 1.08993 * 109.50713 * 63.27923 * 6 4 3 31 31 H 1.09004 * 109.50849 * 303.14983 * 6 4 3 32 32 H 1.09005 * 109.47153 * 299.99669 * 10 8 7 33 33 H 1.09001 * 109.47536 * 59.99652 * 10 8 7 34 34 H 1.09000 * 109.46978 * 180.02562 * 10 8 7 35 35 H 1.08993 * 109.47301 * 182.74895 * 11 8 7 36 36 H 1.09003 * 109.47349 * 302.75268 * 11 8 7 37 37 H 0.96998 * 119.99867 * 180.02562 * 15 14 12 38 38 H 1.09004 * 109.50411 * 181.45219 * 20 7 6 39 39 H 1.09001 * 109.51309 * 61.32282 * 20 7 6 40 40 H 1.09004 * 109.50867 * 296.92138 * 21 20 7 41 41 H 1.08996 * 109.51126 * 176.78808 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9343 0.8550 0.8434 6 6 4.0812 2.8805 0.1210 7 7 5.5494 2.8814 0.0435 8 6 6.0847 4.2390 0.2120 9 1 7.1597 4.2306 0.0320 10 6 5.4079 5.1814 -0.7854 11 6 5.8100 4.7223 1.6374 12 6 6.5319 3.8335 2.6170 13 1 7.1941 3.0597 2.2576 14 6 6.3471 4.0081 3.9722 15 7 5.5404 4.9501 4.4098 16 14 7.2426 2.9068 5.1865 17 1 8.5498 3.5177 5.5379 18 1 6.4217 2.7537 6.4145 19 1 7.4683 1.5736 4.5725 20 6 6.0045 2.2889 -1.2226 21 6 5.4741 0.8568 -1.3295 22 8 4.0481 0.8725 -1.2208 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7669 3.2997 1.0767 31 1 3.6735 3.4810 -0.6922 32 1 5.6036 4.8371 -1.8009 33 1 4.3329 5.1898 -0.6054 34 1 5.8054 6.1886 -0.6607 35 1 6.1635 5.7474 1.7479 36 1 4.7384 4.6843 1.8338 37 1 5.4106 5.0732 5.3631 38 1 7.0942 2.2763 -1.2475 39 1 5.6276 2.8799 -2.0574 40 1 5.8936 0.2522 -0.5253 41 1 5.7611 0.4331 -2.2919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411417699.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:08 Heat of formation + Delta-G solvation = -80.956600 kcal Electronic energy + Delta-G solvation = -18539.243344 eV Core-core repulsion = 15838.625976 eV Total energy + Delta-G solvation = -2700.617367 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.86970 -37.95172 -35.86127 -34.85621 -32.50431 -32.14722 -29.25622 -28.38730 -26.64866 -25.18024 -23.82684 -22.23735 -21.70529 -20.24915 -18.37199 -17.56117 -17.32819 -16.54983 -16.04928 -15.82614 -15.57918 -15.39303 -15.04114 -14.72970 -14.01516 -13.96325 -13.75314 -13.52972 -13.13482 -13.08245 -12.83626 -12.64960 -12.55280 -12.40819 -12.14642 -12.05232 -11.92385 -11.80176 -11.51382 -11.22199 -11.10998 -11.05387 -10.49017 -10.44942 -8.99140 -8.10585 -6.15148 1.40825 1.41631 1.52909 2.46548 2.81834 3.01697 3.25378 3.78928 4.03409 4.07158 4.14175 4.21739 4.24820 4.28895 4.36085 4.49014 4.50828 4.54408 4.70849 4.72183 4.78372 4.86294 4.91422 4.96272 5.02492 5.03462 5.10584 5.16823 5.24591 5.28607 5.38820 5.46897 5.50379 5.67004 5.87750 6.20903 6.27015 6.37094 6.47338 6.97741 7.50348 9.01460 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.007362 C = 0.006320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.129888 B = 3802.432878 C = 4429.417244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.106 4.106 4 C 0.100 3.900 5 H 0.048 0.952 6 C 0.034 3.966 7 N -0.531 5.531 8 C 0.093 3.907 9 H 0.068 0.932 10 C -0.173 4.173 11 C 0.036 3.964 12 C -0.497 4.497 13 H 0.056 0.944 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.954 3.046 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.268 1.268 20 C 0.016 3.984 21 C 0.066 3.934 22 O -0.389 6.389 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.059 0.941 35 H -0.009 1.009 36 H -0.002 1.002 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.049 0.951 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.143 -8.228 -12.180 15.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.144 4.144 4 C 0.042 3.958 5 H 0.066 0.934 6 C -0.094 4.094 7 N -0.255 5.255 8 C -0.015 4.015 9 H 0.086 0.914 10 C -0.232 4.232 11 C -0.001 4.001 12 C -0.535 4.535 13 H 0.074 0.926 14 C -0.200 4.200 15 N -0.581 5.581 16 Si 0.780 3.220 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.193 1.193 20 C -0.112 4.112 21 C -0.011 4.011 22 O -0.308 6.308 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.009 0.991 36 H 0.016 0.984 37 H 0.067 0.933 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.137 -8.530 -11.787 15.430 hybrid contribution 0.408 0.590 0.680 0.989 sum -4.730 -7.939 -11.106 14.448 Atomic orbital electron populations 1.21754 0.94623 1.02192 1.01991 1.21417 0.96603 0.95406 1.01969 1.21599 0.91210 0.98754 1.02854 1.22140 0.95240 0.91836 0.86631 0.93440 1.22656 0.88642 0.97393 1.00756 1.62239 1.08562 1.21384 1.33362 1.21651 0.97936 0.86365 0.95516 0.91402 1.22374 1.00903 1.00517 0.99409 1.19046 0.95576 0.94237 0.91281 1.21426 1.25214 1.15798 0.91108 0.92613 1.25822 0.96567 0.97020 1.00545 1.70089 1.39192 1.34550 1.14313 0.85606 0.78483 0.79535 0.78349 1.20093 1.21232 1.19291 1.22859 1.01318 0.96510 0.90554 1.22753 0.80377 0.94953 1.03007 1.87887 1.21792 1.82013 1.39088 0.92330 0.91820 0.92742 0.91705 0.92653 0.90631 0.90882 0.91996 0.94087 0.91720 0.93213 0.92147 0.99074 0.98356 0.93269 0.89433 0.93952 0.93302 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.91 71.98 0.71 -2.08 16 2 C -0.12 -2.69 5.83 30.60 0.18 -2.51 16 3 C -0.11 -2.84 4.93 30.60 0.15 -2.69 16 4 C 0.10 3.21 2.81 30.63 0.09 3.30 16 5 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 6 C 0.03 1.24 4.07 86.31 0.35 1.60 16 7 N -0.53 -20.41 4.33 -869.99 -3.77 -24.18 16 8 C 0.09 3.83 2.28 44.92 0.10 3.93 16 9 H 0.07 2.77 8.03 -2.39 -0.02 2.76 16 10 C -0.17 -5.90 8.42 71.98 0.61 -5.29 16 11 C 0.04 1.87 4.35 29.85 0.13 2.00 16 12 C -0.50 -28.26 8.78 25.60 0.22 -28.04 16 13 H 0.06 3.14 7.75 -2.91 -0.02 3.12 16 14 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 15 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 16 Si 0.95 45.54 29.54 68.60 2.03 47.57 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 C 0.02 0.47 5.39 86.32 0.47 0.93 16 21 C 0.07 1.78 7.01 72.02 0.50 2.28 16 22 O -0.39 -11.78 10.01 -148.98 -1.49 -13.27 16 23 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 24 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.05 1.01 8.14 -2.39 -0.02 1.00 16 26 H 0.06 1.53 7.83 -2.38 -0.02 1.51 16 27 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 30 H 0.06 2.68 6.34 -2.39 -0.02 2.67 16 31 H 0.04 1.43 6.36 -2.38 -0.02 1.41 16 32 H 0.06 1.89 6.76 -2.38 -0.02 1.87 16 33 H 0.05 1.72 6.38 -2.39 -0.02 1.71 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 36 H 0.00 -0.11 6.41 -2.39 -0.02 -0.12 16 37 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 38 H 0.09 2.45 8.08 -2.38 -0.02 2.43 16 39 H 0.04 1.21 6.74 -2.39 -0.02 1.19 16 40 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -64.03 316.27 1.99 -62.04 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.96 Total: 11.50 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 3.98 Total: -26.31 kcal Atomic # 7 Polarization: -78.04 SS G_CDS: -3.48 Total: -81.52 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.49 Total: -13.27 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -64.03 1.99 -62.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417699.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.919 kcal (2) G-P(sol) polarization free energy of solvation -64.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds