Wall clock time and date at job start Sun Mar 29 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46916 * 2 1 4 4 C 1.53005 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.50621 * 55.00153 * 4 3 2 6 6 C 1.53103 * 109.50571 * 175.08720 * 4 3 2 7 7 N 1.47006 * 109.25742 * 176.82783 * 6 4 3 8 8 C 1.46903 * 110.99841 * 177.60947 * 7 6 4 9 9 H 1.09002 * 109.47243 * 299.99809 * 8 7 6 10 10 C 1.52997 * 109.47330 * 60.00032 * 8 7 6 11 11 C 1.53001 * 109.47174 * 179.97438 * 8 7 6 12 12 C 1.50696 * 109.47140 * 64.99895 * 11 8 7 13 13 H 1.08003 * 120.00221 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00107 * 180.02562 * 12 11 8 15 15 N 1.31519 * 120.00252 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00286 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47051 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47609 * 119.99628 * 16 14 12 19 19 H 1.48500 * 109.47383 * 240.00108 * 16 14 12 20 20 C 1.47017 * 110.75618 * 301.38115 * 7 6 4 21 21 C 1.53103 * 109.25209 * 58.61755 * 20 7 6 22 22 O 1.43012 * 109.50713 * 294.91197 * 4 3 2 23 23 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46950 * 299.99996 * 1 2 3 25 25 H 1.08997 * 109.46810 * 59.99979 * 1 2 3 26 26 H 1.09001 * 109.46950 * 240.00004 * 2 1 3 27 27 H 1.08997 * 109.46810 * 120.00021 * 2 1 3 28 28 H 1.09001 * 109.47308 * 60.00223 * 3 2 1 29 29 H 1.08997 * 109.47398 * 299.99661 * 3 2 1 30 30 H 1.09004 * 109.50456 * 296.76537 * 6 4 3 31 31 H 1.08998 * 109.50572 * 56.89301 * 6 4 3 32 32 H 1.09002 * 109.47036 * 299.99835 * 10 8 7 33 33 H 1.09002 * 109.47140 * 59.99714 * 10 8 7 34 34 H 1.08995 * 109.47590 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47090 * 184.99856 * 11 8 7 36 36 H 1.08994 * 109.47052 * 305.00064 * 11 8 7 37 37 H 0.96997 * 120.00133 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.51060 * 178.55176 * 20 7 6 39 39 H 1.08999 * 109.50995 * 298.64545 * 20 7 6 40 40 H 1.08993 * 109.50776 * 63.08798 * 21 20 7 41 41 H 1.09008 * 109.50126 * 183.17451 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9343 0.8530 -0.8408 6 6 4.0814 2.8802 -0.1229 7 7 5.5494 2.8811 -0.0453 8 6 6.0848 4.2383 -0.2168 9 1 5.7861 4.6264 -1.1906 10 6 5.5348 5.1465 0.8848 11 6 7.6118 4.1990 -0.1295 12 6 8.1608 3.4047 -1.2865 13 1 7.4880 2.9716 -2.0118 14 6 9.5221 3.2308 -1.4191 15 7 10.3416 3.7586 -0.5361 16 14 10.2028 2.2468 -2.8537 17 1 9.0814 1.7636 -3.6988 18 1 11.0985 3.1095 -3.6651 19 1 10.9693 1.0845 -2.3373 20 6 6.0045 2.2916 1.2222 21 6 5.4738 0.8597 1.3323 22 8 4.0471 0.8747 1.2235 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7672 3.2973 -1.0798 31 1 3.6736 3.4826 0.6888 32 1 4.4469 5.1746 0.8230 33 1 5.8335 4.7584 1.8586 34 1 5.9317 6.1536 0.7573 35 1 8.0042 5.2152 -0.1677 36 1 7.9101 3.7293 0.8077 37 1 11.2993 3.6366 -0.6296 38 1 7.0940 2.2789 1.2474 39 1 5.6280 2.8849 2.0555 40 1 5.8934 0.2533 0.5297 41 1 5.7614 0.4380 2.2955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411417700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:11 Heat of formation + Delta-G solvation = -61.858181 kcal Electronic energy + Delta-G solvation = -18402.821633 eV Core-core repulsion = 15703.032436 eV Total energy + Delta-G solvation = -2699.789198 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51460 -36.55317 -34.80666 -32.81416 -31.13886 -30.63103 -27.72568 -27.06555 -25.11023 -23.00868 -22.95590 -21.15040 -20.36110 -18.63944 -16.37560 -16.15449 -15.85019 -14.95559 -14.60572 -14.46700 -14.42032 -14.15510 -13.58366 -13.19522 -12.97567 -12.44894 -12.22845 -12.07732 -11.81046 -11.56870 -11.39624 -11.27301 -10.96492 -10.92547 -10.72050 -10.61519 -10.58677 -10.37496 -9.99922 -9.93744 -9.33574 -9.05709 -8.96101 -8.29190 -7.52497 -5.92128 -3.90557 3.36061 3.43855 3.49434 4.04512 4.40691 4.54106 4.87723 5.01959 5.10800 5.35856 5.42569 5.45025 5.51618 5.54388 5.63438 5.68450 5.76657 5.82476 5.83485 5.89622 5.94331 5.97458 6.02925 6.07448 6.17864 6.24748 6.36836 6.37798 6.46217 6.60954 6.70785 6.93219 7.48676 7.50269 7.65250 7.85848 7.96319 8.09275 8.54049 9.16283 9.71883 11.19686 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.005882 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.563148 B = 4759.124609 C = 5161.418857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.094 3.906 5 H 0.064 0.936 6 C 0.020 3.980 7 N -0.510 5.510 8 C 0.086 3.914 9 H 0.071 0.929 10 C -0.184 4.184 11 C 0.026 3.974 12 C -0.492 4.492 13 H 0.061 0.939 14 C 0.051 3.949 15 N -0.903 5.903 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.287 1.287 20 C 0.018 3.982 21 C 0.065 3.935 22 O -0.388 6.388 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.021 0.979 37 H 0.257 0.743 38 H 0.104 0.896 39 H 0.031 0.969 40 H 0.058 0.942 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.313 -4.344 2.682 16.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.082 0.918 6 C -0.108 4.108 7 N -0.234 5.234 8 C -0.022 4.022 9 H 0.089 0.911 10 C -0.243 4.243 11 C -0.011 4.011 12 C -0.531 4.531 13 H 0.080 0.920 14 C -0.148 4.148 15 N -0.544 5.544 16 Si 0.718 3.282 17 H -0.198 1.198 18 H -0.214 1.214 19 H -0.213 1.213 20 C -0.110 4.110 21 C -0.012 4.012 22 O -0.307 6.307 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.038 0.962 36 H 0.039 0.961 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.049 0.951 40 H 0.076 0.924 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -15.069 -4.693 2.466 15.974 hybrid contribution 0.467 0.195 -0.274 0.575 sum -14.602 -4.498 2.192 15.435 Atomic orbital electron populations 1.21782 0.96241 1.01322 1.01543 1.21464 0.95181 0.96735 1.02506 1.21604 0.93219 0.97520 1.02410 1.22147 0.93505 0.93265 0.87479 0.91840 1.22785 0.90426 0.96541 1.01093 1.62355 1.05837 1.22009 1.33164 1.21931 0.98964 0.84879 0.96402 0.91103 1.22515 0.99686 1.01210 1.00911 1.19272 0.86746 0.97268 0.97793 1.21218 0.91162 1.31335 1.09388 0.92048 1.25010 0.97321 0.96224 0.96275 1.69974 1.02823 1.45902 1.35688 0.86577 0.78908 0.79895 0.82862 1.19771 1.21353 1.21288 1.22800 1.02987 0.94630 0.90619 1.22681 0.80251 0.96564 1.01661 1.87900 1.21658 1.82234 1.38929 0.92986 0.92893 0.92965 0.92203 0.91272 0.91480 0.90800 0.90614 0.94607 0.93957 0.93032 0.92487 0.96247 0.96115 0.93325 0.87819 0.95056 0.92350 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.31 5.83 -26.73 -0.16 -1.46 16 3 C -0.11 -1.29 4.93 -26.73 -0.13 -1.42 16 4 C 0.09 1.39 2.80 -26.68 -0.07 1.31 16 5 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.02 0.33 4.48 -3.71 -0.02 0.31 16 7 N -0.51 -9.85 4.47 -226.33 -1.01 -10.86 16 8 C 0.09 1.77 2.37 -67.71 -0.16 1.61 16 9 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 10 C -0.18 -3.24 8.49 37.16 0.32 -2.93 16 11 C 0.03 0.66 4.14 -27.88 -0.12 0.54 16 12 C -0.49 -13.67 8.84 -34.44 -0.30 -13.98 16 13 H 0.06 1.72 7.74 -52.48 -0.41 1.31 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 15 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 16 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 C 0.02 0.33 4.88 -3.71 -0.02 0.31 16 21 C 0.07 1.06 7.01 37.21 0.26 1.32 16 22 O -0.39 -6.24 10.02 -35.23 -0.35 -6.59 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.04 0.57 6.44 -51.93 -0.33 0.24 16 32 H 0.04 0.67 6.46 -51.93 -0.34 0.33 16 33 H 0.05 0.91 6.54 -51.93 -0.34 0.57 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.55 6.02 -51.93 -0.31 0.24 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.10 2.19 6.00 -51.93 -0.31 1.87 16 39 H 0.03 0.57 6.52 -51.93 -0.34 0.23 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.26 8.14 -51.92 -0.42 0.84 16 LS Contribution 315.48 15.07 4.75 4.75 Total: -1.00 -29.55 315.48 -8.44 -37.99 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -7.42 Total: -1.94 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.13 Total: -14.01 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: -0.28 Total: -37.08 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.35 Total: -6.59 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.55 -8.44 -37.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.870 kcal (2) G-P(sol) polarization free energy of solvation -29.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds