Wall clock time and date at job start Sun Mar 29 2020 22:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.46916 * 2 1 4 4 C 1.53005 * 109.46608 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.50621 * 55.00153 * 4 3 2 6 6 C 1.53103 * 109.50571 * 175.08720 * 4 3 2 7 7 N 1.47006 * 109.25742 * 176.82783 * 6 4 3 8 8 C 1.46903 * 110.99841 * 177.60947 * 7 6 4 9 9 H 1.09002 * 109.47243 * 299.99809 * 8 7 6 10 10 C 1.52997 * 109.47330 * 60.00032 * 8 7 6 11 11 C 1.53001 * 109.47174 * 179.97438 * 8 7 6 12 12 C 1.50696 * 109.47140 * 64.99895 * 11 8 7 13 13 H 1.08003 * 120.00221 * 0.02562 * 12 11 8 14 14 C 1.37874 * 120.00107 * 180.02562 * 12 11 8 15 15 N 1.31519 * 120.00252 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00286 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47051 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47609 * 119.99628 * 16 14 12 19 19 H 1.48500 * 109.47383 * 240.00108 * 16 14 12 20 20 C 1.47017 * 110.75618 * 301.38115 * 7 6 4 21 21 C 1.53103 * 109.25209 * 58.61755 * 20 7 6 22 22 O 1.43012 * 109.50713 * 294.91197 * 4 3 2 23 23 H 1.08997 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46950 * 299.99996 * 1 2 3 25 25 H 1.08997 * 109.46810 * 59.99979 * 1 2 3 26 26 H 1.09001 * 109.46950 * 240.00004 * 2 1 3 27 27 H 1.08997 * 109.46810 * 120.00021 * 2 1 3 28 28 H 1.09001 * 109.47308 * 60.00223 * 3 2 1 29 29 H 1.08997 * 109.47398 * 299.99661 * 3 2 1 30 30 H 1.09004 * 109.50456 * 296.76537 * 6 4 3 31 31 H 1.08998 * 109.50572 * 56.89301 * 6 4 3 32 32 H 1.09002 * 109.47036 * 299.99835 * 10 8 7 33 33 H 1.09002 * 109.47140 * 59.99714 * 10 8 7 34 34 H 1.08995 * 109.47590 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47090 * 184.99856 * 11 8 7 36 36 H 1.08994 * 109.47052 * 305.00064 * 11 8 7 37 37 H 0.96997 * 120.00133 * 180.02562 * 15 14 12 38 38 H 1.08995 * 109.51060 * 178.55176 * 20 7 6 39 39 H 1.08999 * 109.50995 * 298.64545 * 20 7 6 40 40 H 1.08993 * 109.50776 * 63.08798 * 21 20 7 41 41 H 1.09008 * 109.50126 * 183.17451 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9343 0.8530 -0.8408 6 6 4.0814 2.8802 -0.1229 7 7 5.5494 2.8811 -0.0453 8 6 6.0848 4.2383 -0.2168 9 1 5.7861 4.6264 -1.1906 10 6 5.5348 5.1465 0.8848 11 6 7.6118 4.1990 -0.1295 12 6 8.1608 3.4047 -1.2865 13 1 7.4880 2.9716 -2.0118 14 6 9.5221 3.2308 -1.4191 15 7 10.3416 3.7586 -0.5361 16 14 10.2028 2.2468 -2.8537 17 1 9.0814 1.7636 -3.6988 18 1 11.0985 3.1095 -3.6651 19 1 10.9693 1.0845 -2.3373 20 6 6.0045 2.2916 1.2222 21 6 5.4738 0.8597 1.3323 22 8 4.0471 0.8747 1.2235 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 3.7672 3.2973 -1.0798 31 1 3.6736 3.4826 0.6888 32 1 4.4469 5.1746 0.8230 33 1 5.8335 4.7584 1.8586 34 1 5.9317 6.1536 0.7573 35 1 8.0042 5.2152 -0.1677 36 1 7.9101 3.7293 0.8077 37 1 11.2993 3.6366 -0.6296 38 1 7.0940 2.2789 1.2474 39 1 5.6280 2.8849 2.0555 40 1 5.8934 0.2533 0.5297 41 1 5.7614 0.4380 2.2955 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411417700.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:10 Heat of formation + Delta-G solvation = -80.080532 kcal Electronic energy + Delta-G solvation = -18403.611814 eV Core-core repulsion = 15703.032436 eV Total energy + Delta-G solvation = -2700.579378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.87684 -38.00433 -35.79503 -34.87481 -32.53467 -32.05004 -29.42803 -28.42705 -26.44324 -24.87645 -24.27936 -22.17790 -21.66210 -20.19672 -18.38257 -17.53633 -17.27418 -16.54745 -16.17171 -15.81382 -15.65795 -15.37988 -14.96262 -14.74776 -14.04918 -13.90057 -13.77736 -13.45250 -13.20858 -13.08268 -12.80473 -12.72455 -12.52852 -12.38248 -12.07021 -12.01904 -11.86350 -11.81394 -11.49138 -11.27911 -11.09075 -11.01342 -10.49620 -10.44637 -9.01674 -8.11747 -6.17010 1.40377 1.41913 1.54616 2.46234 2.82228 3.01698 3.24325 3.78610 4.04559 4.10890 4.15738 4.21045 4.25092 4.30780 4.36544 4.48067 4.51159 4.56593 4.68163 4.73452 4.80126 4.88148 4.91696 4.99640 5.01336 5.05843 5.14101 5.15338 5.23892 5.31626 5.41350 5.47419 5.53104 5.67847 5.87916 6.21002 6.26103 6.35570 6.46215 6.96925 7.49466 9.00321 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028317 B = 0.005882 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.563148 B = 4759.124609 C = 5161.418857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.103 4.103 4 C 0.093 3.907 5 H 0.054 0.946 6 C 0.023 3.977 7 N -0.530 5.530 8 C 0.093 3.907 9 H 0.067 0.933 10 C -0.174 4.174 11 C 0.033 3.967 12 C -0.501 4.501 13 H 0.057 0.943 14 C -0.002 4.002 15 N -0.939 5.939 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.023 3.977 21 C 0.071 3.929 22 O -0.390 6.390 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.043 0.957 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.059 0.941 35 H -0.008 1.008 36 H 0.002 0.998 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.036 0.964 40 H 0.048 0.952 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.192 -4.993 2.136 18.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.140 4.140 4 C 0.035 3.965 5 H 0.072 0.928 6 C -0.105 4.105 7 N -0.254 5.254 8 C -0.015 4.015 9 H 0.085 0.915 10 C -0.233 4.233 11 C -0.004 4.004 12 C -0.539 4.539 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.581 5.581 16 Si 0.781 3.219 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.105 4.105 21 C -0.006 4.006 22 O -0.309 6.309 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.011 0.989 36 H 0.020 0.980 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.968 -5.344 1.917 17.893 hybrid contribution 1.044 0.407 -0.097 1.125 sum -15.924 -4.937 1.820 16.770 Atomic orbital electron populations 1.21749 0.94616 1.02047 1.02118 1.21436 0.96576 0.95894 1.01834 1.21602 0.90658 0.98421 1.03368 1.22288 0.95493 0.92038 0.86683 0.92822 1.22863 0.88040 0.97727 1.01887 1.62269 1.08184 1.21166 1.33760 1.21654 0.95828 0.86612 0.97403 0.91490 1.22378 1.01082 1.00447 0.99349 1.19120 0.90291 0.94923 0.96099 1.21488 0.91386 1.31215 1.09824 0.92523 1.25823 0.97779 0.97327 0.98889 1.70094 1.03116 1.47317 1.37536 0.85538 0.78249 0.78418 0.79656 1.19056 1.20792 1.20847 1.22685 1.00979 0.96268 0.90577 1.22641 0.80505 0.94818 1.02593 1.87914 1.21132 1.82258 1.39597 0.92266 0.92605 0.92091 0.92300 0.92586 0.91230 0.89054 0.89576 0.93907 0.91452 0.93456 0.92220 0.98927 0.98022 0.93214 0.91200 0.94564 0.93329 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -2.32 5.83 30.60 0.18 -2.14 16 3 C -0.10 -2.14 4.93 30.60 0.15 -1.99 16 4 C 0.09 2.57 2.80 30.63 0.09 2.66 16 5 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.02 0.69 4.48 86.32 0.39 1.08 16 7 N -0.53 -20.21 4.47 -869.97 -3.89 -24.10 16 8 C 0.09 3.82 2.37 44.91 0.11 3.93 16 9 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 10 C -0.17 -5.93 8.49 71.98 0.61 -5.31 16 11 C 0.03 1.70 4.14 29.85 0.12 1.82 16 12 C -0.50 -28.29 8.84 25.60 0.23 -28.06 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 15 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 16 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 17 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 18 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 C 0.02 0.86 4.88 86.32 0.42 1.28 16 21 C 0.07 2.26 7.01 72.02 0.50 2.76 16 22 O -0.39 -11.91 10.02 -148.98 -1.49 -13.40 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.06 1.23 7.83 -2.39 -0.02 1.21 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 31 H 0.04 1.25 6.44 -2.39 -0.02 1.23 16 32 H 0.07 1.96 6.46 -2.39 -0.02 1.94 16 33 H 0.05 1.64 6.54 -2.39 -0.02 1.62 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 36 H 0.00 0.09 6.02 -2.39 -0.01 0.07 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.07 3.06 6.00 -2.39 -0.01 3.04 16 39 H 0.04 1.29 6.52 -2.39 -0.02 1.28 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 Total: -1.00 -63.28 315.48 1.87 -61.41 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.97 Total: 10.85 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.97 Total: -25.16 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.60 Total: -80.98 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.49 Total: -13.40 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -63.28 1.87 -61.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417700.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.668 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds