Wall clock time and date at job start Sun Mar 29 2020 22:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.50871 * 305.00264 * 4 3 2 6 6 C 1.53100 * 109.51099 * 184.91748 * 4 3 2 7 7 N 1.47017 * 109.25679 * 183.26614 * 6 4 3 8 8 C 1.46903 * 110.99518 * 182.34930 * 7 6 4 9 9 H 1.09000 * 109.46999 * 55.27270 * 8 7 6 10 10 C 1.52992 * 109.47064 * 295.26893 * 8 7 6 11 11 C 1.53001 * 109.46787 * 175.26713 * 8 7 6 12 12 C 1.50702 * 109.47350 * 294.99647 * 11 8 7 13 13 H 1.07998 * 119.99529 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99805 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99484 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47143 * 90.00687 * 16 14 12 18 18 H 1.48508 * 109.47069 * 210.00123 * 16 14 12 19 19 H 1.48496 * 109.47437 * 330.00326 * 16 14 12 20 20 C 1.47012 * 110.79277 * 58.54329 * 7 6 4 21 21 C 1.53098 * 109.25995 * 301.40798 * 20 7 6 22 22 O 1.43019 * 109.50523 * 65.08765 * 4 3 2 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09008 * 109.49936 * 303.15229 * 6 4 3 31 31 H 1.08997 * 109.50459 * 63.27575 * 6 4 3 32 32 H 1.09005 * 109.47407 * 180.02562 * 10 8 7 33 33 H 1.09009 * 109.47298 * 300.00072 * 10 8 7 34 34 H 1.09000 * 109.47187 * 59.99806 * 10 8 7 35 35 H 1.08998 * 109.46962 * 55.00043 * 11 8 7 36 36 H 1.09000 * 109.46599 * 175.00006 * 11 8 7 37 37 H 0.97005 * 119.99699 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.50223 * 181.47090 * 20 7 6 39 39 H 1.08996 * 109.50439 * 61.34587 * 20 7 6 40 40 H 1.08998 * 109.50388 * 296.91734 * 21 20 7 41 41 H 1.08996 * 109.50529 * 176.78027 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9343 0.8531 0.8407 6 6 4.0813 2.8803 0.1231 7 7 5.5493 2.8814 0.0432 8 6 6.0847 4.2387 0.2137 9 1 5.7183 4.6588 1.1504 10 6 5.6278 5.1174 -0.9525 11 6 7.6134 4.1840 0.2427 12 6 8.0657 3.4211 1.4611 13 1 7.3358 3.0155 2.1460 14 6 9.4114 3.2400 1.7009 15 7 10.3002 3.7335 0.8666 16 14 9.9719 2.2938 3.2107 17 1 10.0915 0.8521 2.8752 18 1 11.2915 2.8093 3.6563 19 1 8.9788 2.4676 4.3009 20 6 6.0034 2.2913 -1.2244 21 6 5.4728 0.8593 -1.3335 22 8 4.0470 0.8749 -1.2236 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.6728 3.4829 -0.6883 31 1 3.7677 3.2970 1.0802 32 1 6.0254 6.1244 -0.8263 33 1 5.9942 4.6973 -1.8893 34 1 4.5387 5.1563 -0.9732 35 1 7.9761 3.6832 -0.6549 36 1 8.0126 5.1976 0.2799 37 1 11.2469 3.6065 1.0355 38 1 7.0930 2.2787 -1.2503 39 1 5.6257 2.8838 -2.0577 40 1 5.8931 0.2534 -0.5308 41 1 5.7590 0.4375 -2.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411417701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:13 Heat of formation + Delta-G solvation = -62.375114 kcal Electronic energy + Delta-G solvation = -18392.051387 eV Core-core repulsion = 15692.239773 eV Total energy + Delta-G solvation = -2699.811614 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.51723 -36.54721 -34.81176 -32.81262 -31.15788 -30.62888 -27.66880 -27.12151 -25.09156 -23.03755 -22.96893 -21.14630 -20.33793 -18.66884 -16.38300 -16.15223 -15.84071 -14.96076 -14.61025 -14.47064 -14.42668 -14.14752 -13.61408 -13.19273 -12.95945 -12.47092 -12.22466 -12.06122 -11.80313 -11.55056 -11.41951 -11.26197 -10.97306 -10.92445 -10.73332 -10.62275 -10.59586 -10.38147 -10.00854 -9.93520 -9.36444 -9.06169 -8.95822 -8.27934 -7.52414 -5.91043 -3.89249 3.37955 3.44007 3.48184 4.03644 4.39850 4.54742 4.87280 5.01936 5.10684 5.35398 5.42422 5.45733 5.50603 5.53627 5.63231 5.67161 5.76074 5.82282 5.83141 5.88842 5.94083 5.97151 6.02511 6.06919 6.17577 6.24482 6.35170 6.37404 6.44994 6.58241 6.69315 6.94638 7.48631 7.49903 7.64454 7.85908 7.97031 8.10030 8.55336 9.16902 9.72822 11.20837 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.005931 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.757939 B = 4719.579114 C = 5141.384226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.110 4.110 4 C 0.094 3.906 5 H 0.064 0.936 6 C 0.021 3.979 7 N -0.510 5.510 8 C 0.086 3.914 9 H 0.070 0.930 10 C -0.184 4.184 11 C 0.028 3.972 12 C -0.492 4.492 13 H 0.060 0.940 14 C 0.051 3.949 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.275 1.275 20 C 0.018 3.982 21 C 0.065 3.935 22 O -0.388 6.388 23 H 0.051 0.949 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.035 0.965 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.258 0.742 38 H 0.100 0.900 39 H 0.033 0.967 40 H 0.058 0.942 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.176 -4.301 -3.454 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.148 4.148 4 C 0.036 3.964 5 H 0.082 0.918 6 C -0.108 4.108 7 N -0.233 5.233 8 C -0.022 4.022 9 H 0.089 0.911 10 C -0.243 4.243 11 C -0.009 4.009 12 C -0.531 4.531 13 H 0.078 0.922 14 C -0.148 4.148 15 N -0.544 5.544 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.200 1.200 20 C -0.110 4.110 21 C -0.011 4.011 22 O -0.307 6.307 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.037 0.963 37 H 0.067 0.933 38 H 0.118 0.882 39 H 0.051 0.949 40 H 0.077 0.923 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.925 -4.647 -3.224 15.961 hybrid contribution 0.394 0.190 0.326 0.545 sum -14.532 -4.457 -2.898 15.474 Atomic orbital electron populations 1.21781 0.96237 1.01324 1.01544 1.21462 0.95184 0.96731 1.02508 1.21604 0.93203 0.97527 1.02420 1.22152 0.93514 0.93264 0.87462 0.91794 1.22778 0.90363 0.96537 1.01090 1.62342 1.05910 1.22047 1.33036 1.21934 0.99453 0.85019 0.95755 0.91148 1.22515 0.99674 1.01257 1.00871 1.19230 0.86705 0.97176 0.97741 1.21173 0.91227 1.32850 1.07812 0.92156 1.25004 0.97026 0.96225 0.96572 1.69964 1.01030 1.46542 1.36894 0.86626 0.77786 0.80142 0.83590 1.20900 1.21582 1.20022 1.22786 1.02722 0.94757 0.90745 1.22662 0.80327 0.96500 1.01656 1.87883 1.21621 1.82238 1.38962 0.92986 0.92960 0.92897 0.91279 0.92193 0.91483 0.90781 0.94728 0.90551 0.92475 0.92922 0.94058 0.96225 0.96263 0.93285 0.88176 0.94934 0.92333 0.89201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.99 16 2 C -0.12 -1.31 5.83 -26.73 -0.16 -1.46 16 3 C -0.11 -1.29 4.93 -26.73 -0.13 -1.42 16 4 C 0.09 1.39 2.80 -26.68 -0.07 1.31 16 5 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 6 C 0.02 0.34 4.59 -3.71 -0.02 0.32 16 7 N -0.51 -9.84 4.43 -226.33 -1.00 -10.84 16 8 C 0.09 1.77 2.30 -67.71 -0.16 1.61 16 9 H 0.07 1.47 8.13 -51.93 -0.42 1.05 16 10 C -0.18 -3.24 8.49 37.15 0.32 -2.92 16 11 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 12 C -0.49 -13.71 8.84 -34.44 -0.30 -14.02 16 13 H 0.06 1.69 7.74 -52.49 -0.41 1.28 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 16 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.02 0.33 4.87 -3.71 -0.02 0.31 16 21 C 0.07 1.05 7.01 37.21 0.26 1.31 16 22 O -0.39 -6.21 10.01 -35.23 -0.35 -6.56 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.82 7.83 -51.93 -0.41 0.41 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.55 6.55 -51.92 -0.34 0.21 16 31 H 0.08 1.17 8.13 -51.93 -0.42 0.75 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.05 0.93 6.44 -51.92 -0.33 0.59 16 34 H 0.04 0.65 6.57 -51.93 -0.34 0.31 16 35 H 0.02 0.52 6.13 -51.93 -0.32 0.20 16 36 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 38 H 0.10 2.07 6.11 -51.93 -0.32 1.75 16 39 H 0.03 0.58 6.43 -51.93 -0.33 0.24 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 315.80 15.07 4.76 4.76 Total: -1.00 -29.66 315.80 -8.44 -38.10 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -7.43 Total: -2.13 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -0.13 Total: -13.97 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: -0.27 Total: -37.16 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.35 Total: -6.56 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.66 -8.44 -38.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.274 kcal (2) G-P(sol) polarization free energy of solvation -29.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds