Wall clock time and date at job start Sun Mar 29 2020 22:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46886 * 2 1 4 4 C 1.52997 * 109.47060 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.50871 * 305.00264 * 4 3 2 6 6 C 1.53100 * 109.51099 * 184.91748 * 4 3 2 7 7 N 1.47017 * 109.25679 * 183.26614 * 6 4 3 8 8 C 1.46903 * 110.99518 * 182.34930 * 7 6 4 9 9 H 1.09000 * 109.46999 * 55.27270 * 8 7 6 10 10 C 1.52992 * 109.47064 * 295.26893 * 8 7 6 11 11 C 1.53001 * 109.46787 * 175.26713 * 8 7 6 12 12 C 1.50702 * 109.47350 * 294.99647 * 11 8 7 13 13 H 1.07998 * 119.99529 * 0.02562 * 12 11 8 14 14 C 1.37880 * 119.99805 * 179.97438 * 12 11 8 15 15 N 1.31511 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99484 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47143 * 90.00687 * 16 14 12 18 18 H 1.48508 * 109.47069 * 210.00123 * 16 14 12 19 19 H 1.48496 * 109.47437 * 330.00326 * 16 14 12 20 20 C 1.47012 * 110.79277 * 58.54329 * 7 6 4 21 21 C 1.53098 * 109.25995 * 301.40798 * 20 7 6 22 22 O 1.43019 * 109.50523 * 65.08765 * 4 3 2 23 23 H 1.09000 * 109.47437 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47109 * 299.99380 * 1 2 3 25 25 H 1.09002 * 109.47508 * 59.99571 * 1 2 3 26 26 H 1.09001 * 109.46652 * 240.00345 * 2 1 3 27 27 H 1.08992 * 109.47514 * 120.00434 * 2 1 3 28 28 H 1.09002 * 109.47398 * 300.00496 * 3 2 1 29 29 H 1.09001 * 109.47194 * 60.00677 * 3 2 1 30 30 H 1.09008 * 109.49936 * 303.15229 * 6 4 3 31 31 H 1.08997 * 109.50459 * 63.27575 * 6 4 3 32 32 H 1.09005 * 109.47407 * 180.02562 * 10 8 7 33 33 H 1.09009 * 109.47298 * 300.00072 * 10 8 7 34 34 H 1.09000 * 109.47187 * 59.99806 * 10 8 7 35 35 H 1.08998 * 109.46962 * 55.00043 * 11 8 7 36 36 H 1.09000 * 109.46599 * 175.00006 * 11 8 7 37 37 H 0.97005 * 119.99699 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.50223 * 181.47090 * 20 7 6 39 39 H 1.08996 * 109.50439 * 61.34587 * 20 7 6 40 40 H 1.08998 * 109.50388 * 296.91734 * 21 20 7 41 41 H 1.08996 * 109.50529 * 176.78027 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9343 0.8531 0.8407 6 6 4.0813 2.8803 0.1231 7 7 5.5493 2.8814 0.0432 8 6 6.0847 4.2387 0.2137 9 1 5.7183 4.6588 1.1504 10 6 5.6278 5.1174 -0.9525 11 6 7.6134 4.1840 0.2427 12 6 8.0657 3.4211 1.4611 13 1 7.3358 3.0155 2.1460 14 6 9.4114 3.2400 1.7009 15 7 10.3002 3.7335 0.8666 16 14 9.9719 2.2938 3.2107 17 1 10.0915 0.8521 2.8752 18 1 11.2915 2.8093 3.6563 19 1 8.9788 2.4676 4.3009 20 6 6.0034 2.2913 -1.2244 21 6 5.4728 0.8593 -1.3335 22 8 4.0470 0.8749 -1.2236 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.6765 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.6728 3.4829 -0.6883 31 1 3.7677 3.2970 1.0802 32 1 6.0254 6.1244 -0.8263 33 1 5.9942 4.6973 -1.8893 34 1 4.5387 5.1563 -0.9732 35 1 7.9761 3.6832 -0.6549 36 1 8.0126 5.1976 0.2799 37 1 11.2469 3.6065 1.0355 38 1 7.0930 2.2787 -1.2503 39 1 5.6257 2.8838 -2.0577 40 1 5.8931 0.2534 -0.5308 41 1 5.7590 0.4375 -2.2969 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411417701.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:12 Heat of formation + Delta-G solvation = -80.665884 kcal Electronic energy + Delta-G solvation = -18392.844534 eV Core-core repulsion = 15692.239773 eV Total energy + Delta-G solvation = -2700.604761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87227 -37.99597 -35.79963 -34.87732 -32.55455 -32.04148 -29.38134 -28.47645 -26.40894 -24.90387 -24.29743 -22.16609 -21.64629 -20.22223 -18.37745 -17.54966 -17.25367 -16.54883 -16.18104 -15.81621 -15.64288 -15.38293 -14.98503 -14.73531 -14.02830 -13.92052 -13.77442 -13.45881 -13.18675 -13.07263 -12.82001 -12.71167 -12.54262 -12.39787 -12.07652 -12.03612 -11.84802 -11.81820 -11.49277 -11.28431 -11.10839 -11.02813 -10.48873 -10.44538 -9.01043 -8.11316 -6.16444 1.41635 1.42101 1.53050 2.46443 2.81854 3.01201 3.24666 3.78371 4.04062 4.10269 4.15560 4.20696 4.24885 4.30395 4.36536 4.47981 4.50654 4.56558 4.68141 4.72957 4.79709 4.87841 4.90791 4.99317 5.01364 5.04678 5.14006 5.15936 5.24123 5.31497 5.41240 5.47341 5.52983 5.67495 5.87929 6.21135 6.26246 6.35979 6.46375 6.97099 7.49730 9.00650 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027317 B = 0.005931 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.757939 B = 4719.579114 C = 5141.384226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.103 4.103 4 C 0.093 3.907 5 H 0.053 0.947 6 C 0.024 3.976 7 N -0.530 5.530 8 C 0.094 3.906 9 H 0.067 0.933 10 C -0.174 4.174 11 C 0.035 3.965 12 C -0.501 4.501 13 H 0.056 0.944 14 C -0.002 4.002 15 N -0.939 5.939 16 Si 0.956 3.044 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.267 1.267 20 C 0.023 3.977 21 C 0.071 3.929 22 O -0.389 6.389 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.091 0.909 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.065 0.935 35 H -0.001 1.001 36 H -0.007 1.007 37 H 0.259 0.741 38 H 0.068 0.932 39 H 0.039 0.961 40 H 0.047 0.953 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.097 -4.931 -2.987 18.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.140 4.140 4 C 0.035 3.965 5 H 0.071 0.929 6 C -0.104 4.104 7 N -0.255 5.255 8 C -0.014 4.014 9 H 0.085 0.915 10 C -0.232 4.232 11 C -0.002 4.002 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.199 4.199 15 N -0.581 5.581 16 Si 0.782 3.218 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.191 1.191 20 C -0.105 4.105 21 C -0.006 4.006 22 O -0.309 6.309 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.011 0.989 37 H 0.068 0.932 38 H 0.086 0.914 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.868 -5.280 -2.756 17.889 hybrid contribution 0.987 0.395 0.172 1.077 sum -15.881 -4.885 -2.585 16.815 Atomic orbital electron populations 1.21749 0.94612 1.02049 1.02118 1.21434 0.96578 0.95887 1.01835 1.21601 0.90654 0.98426 1.03368 1.22283 0.95493 0.92020 0.86676 0.92866 1.22849 0.88016 0.97725 1.01832 1.62242 1.08227 1.21206 1.33788 1.21648 0.96132 0.86703 0.96965 0.91522 1.22376 1.01128 1.00548 0.99196 1.19078 0.90313 0.94837 0.95991 1.21464 0.91374 1.32699 1.08424 0.92532 1.25826 0.97252 0.97230 0.99549 1.70089 1.01313 1.47937 1.38765 0.85586 0.77412 0.78758 0.80079 1.20340 1.21171 1.19125 1.22690 1.00832 0.96346 0.90670 1.22631 0.80534 0.94810 1.02597 1.87897 1.21144 1.82252 1.39567 0.92263 0.92115 0.92582 0.92553 0.92331 0.91188 0.89100 0.93964 0.89665 0.92214 0.93270 0.91616 0.98234 0.98917 0.93222 0.91378 0.94249 0.93430 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.91 71.98 0.71 -1.54 16 2 C -0.12 -2.33 5.83 30.59 0.18 -2.15 16 3 C -0.10 -2.15 4.93 30.59 0.15 -2.00 16 4 C 0.09 2.59 2.80 30.63 0.09 2.67 16 5 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 6 C 0.02 0.72 4.59 86.31 0.40 1.12 16 7 N -0.53 -20.23 4.43 -869.97 -3.86 -24.08 16 8 C 0.09 3.84 2.30 44.91 0.10 3.94 16 9 H 0.07 2.76 8.13 -2.39 -0.02 2.74 16 10 C -0.17 -5.92 8.49 71.98 0.61 -5.31 16 11 C 0.03 1.82 4.27 29.85 0.13 1.94 16 12 C -0.50 -28.40 8.84 25.60 0.23 -28.17 16 13 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 14 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 15 N -0.94 -57.39 13.29 21.45 0.28 -57.11 16 16 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 18 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 C 0.02 0.83 4.87 86.31 0.42 1.25 16 21 C 0.07 2.23 7.01 72.01 0.50 2.74 16 22 O -0.39 -11.83 10.01 -148.98 -1.49 -13.32 16 23 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 1.23 7.83 -2.39 -0.02 1.22 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.23 6.55 -2.38 -0.02 1.22 16 31 H 0.08 2.43 8.13 -2.39 -0.02 2.41 16 32 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.05 1.70 6.44 -2.38 -0.02 1.68 16 34 H 0.06 1.92 6.57 -2.39 -0.02 1.90 16 35 H 0.00 -0.03 6.13 -2.39 -0.01 -0.05 16 36 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 37 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 38 H 0.07 2.91 6.11 -2.39 -0.01 2.90 16 39 H 0.04 1.37 6.43 -2.39 -0.02 1.35 16 40 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 Total: -1.00 -63.51 315.80 1.91 -61.60 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.97 Total: 10.70 kcal Atomic # 6 Polarization: -29.15 SS G_CDS: 3.98 Total: -25.17 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -3.57 Total: -81.19 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -1.49 Total: -13.32 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -63.51 1.91 -61.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411417701.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.070 kcal (2) G-P(sol) polarization free energy of solvation -63.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds