Wall clock time and date at job start Sun Mar 29 2020 22:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46976 * 2 1 4 4 C 1.52997 * 109.47436 * 120.00185 * 2 1 3 5 5 C 1.52998 * 109.47081 * 174.99814 * 4 2 1 6 6 H 1.09003 * 109.47949 * 54.97505 * 5 4 2 7 7 O 1.42903 * 109.48300 * 294.94263 * 5 4 2 8 8 C 1.42900 * 114.09874 * 178.85832 * 7 5 4 9 9 C 1.53095 * 109.41673 * 61.15733 * 8 7 5 10 10 C 1.53172 * 109.16297 * 302.39412 * 9 8 7 11 11 C 1.53096 * 109.48249 * 175.00009 * 5 4 2 12 12 H 1.08996 * 109.51872 * 57.62261 * 11 5 4 13 13 N 1.46906 * 109.52163 * 297.49982 * 11 5 4 14 14 C 1.46898 * 110.99888 * 154.99816 * 13 11 5 15 15 C 1.50705 * 109.46661 * 180.02562 * 14 13 11 16 16 H 1.07998 * 120.00458 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99662 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99977 * 180.02562 * 17 15 14 19 19 Si 1.86808 * 120.00066 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47237 * 90.00089 * 19 17 15 21 21 H 1.48504 * 109.46698 * 210.00151 * 19 17 15 22 22 H 1.48502 * 109.46787 * 330.00064 * 19 17 15 23 23 H 1.09008 * 109.46849 * 299.99776 * 1 2 3 24 24 H 1.08990 * 109.47771 * 59.99513 * 1 2 3 25 25 H 1.09002 * 109.46813 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46909 * 240.00295 * 2 1 3 27 27 H 1.08997 * 109.46864 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47191 * 300.00352 * 3 2 1 29 29 H 1.08998 * 109.47060 * 60.00387 * 3 2 1 30 30 H 1.09001 * 109.47253 * 54.99721 * 4 2 1 31 31 H 1.09001 * 109.46977 * 294.99741 * 4 2 1 32 32 H 1.08996 * 109.48145 * 181.14186 * 8 7 5 33 33 H 1.09002 * 109.48077 * 301.17591 * 8 7 5 34 34 H 1.09004 * 109.51841 * 62.29566 * 9 8 7 35 35 H 1.08993 * 109.52376 * 182.42061 * 9 8 7 36 36 H 1.09008 * 109.54342 * 297.10902 * 10 9 8 37 37 H 1.09004 * 109.54318 * 176.84457 * 10 9 8 38 38 H 1.00902 * 110.99923 * 278.95758 * 13 11 5 39 39 H 1.08995 * 109.47296 * 299.99911 * 14 13 11 40 40 H 1.08997 * 109.47334 * 60.00212 * 14 13 11 41 41 H 0.96997 * 119.99893 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1878 6 1 3.9955 0.1611 1.0521 7 8 3.9387 -1.6672 0.0909 8 6 5.3503 -1.8171 -0.0739 9 6 5.9430 -2.4654 1.1799 10 6 5.6062 -1.6020 2.3995 11 6 4.0859 -1.4398 2.4923 12 1 3.6235 -2.4142 2.6496 13 7 3.7545 -0.5521 3.6150 14 6 3.6804 -1.3028 4.8755 15 6 3.3387 -0.3613 6.0015 16 1 3.1916 0.6897 5.8008 17 6 3.2147 -0.8414 7.2880 18 7 2.9160 -0.0199 8.2706 19 14 3.4698 -2.6592 7.6352 20 1 4.9005 -2.9079 7.9454 21 1 2.6342 -3.0636 8.7943 22 1 3.0771 -3.4508 6.4417 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6054 -1.7198 1.2951 31 1 1.7517 -0.1583 2.1369 32 1 5.5502 -2.4492 -0.9391 33 1 5.8045 -0.8380 -0.2262 34 1 5.5190 -3.4611 1.3102 35 1 7.0251 -2.5413 1.0739 36 1 6.0716 -0.6222 2.2924 37 1 5.9770 -2.0865 3.3028 38 1 4.4165 0.2062 3.6840 39 1 2.9098 -2.0696 4.7970 40 1 4.6429 -1.7740 5.0749 41 1 2.8292 -0.3576 9.1757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411558723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:26 Heat of formation + Delta-G solvation = -74.350414 kcal Electronic energy + Delta-G solvation = -18366.945708 eV Core-core repulsion = 15666.614807 eV Total energy + Delta-G solvation = -2700.330902 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.58792 -35.98031 -35.59461 -32.87955 -32.12429 -30.23868 -27.25870 -26.97312 -26.08039 -23.58119 -21.99443 -21.10101 -20.11989 -19.58618 -16.92305 -16.17974 -15.71100 -15.07554 -14.68964 -14.59548 -14.21167 -13.98264 -13.55095 -13.04812 -12.89602 -12.63739 -12.46107 -12.08558 -12.02714 -11.91161 -11.68279 -11.29813 -11.16115 -10.92429 -10.76681 -10.68280 -10.44138 -10.39692 -10.31557 -9.88257 -9.81298 -9.38960 -9.08829 -8.61901 -7.47630 -6.07794 -4.05697 3.26411 3.34489 3.37260 3.96222 4.40173 4.80486 4.86288 4.97650 5.05880 5.17908 5.19793 5.24809 5.28169 5.42703 5.46022 5.53499 5.72301 5.74308 5.80078 5.94416 5.95985 6.00742 6.01622 6.05705 6.11875 6.24355 6.25801 6.32950 6.44997 6.49485 6.59952 6.77074 6.83229 7.00599 7.42248 7.59520 7.87408 8.29325 8.62207 9.00273 9.54289 11.05473 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020951 B = 0.006829 C = 0.005635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.144281 B = 4099.366331 C = 4967.827053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.098 4.098 5 C 0.103 3.897 6 H 0.058 0.942 7 O -0.382 6.382 8 C 0.063 3.937 9 C -0.152 4.152 10 C -0.153 4.153 11 C 0.056 3.944 12 H 0.077 0.923 13 N -0.667 5.667 14 C 0.166 3.834 15 C -0.515 4.515 16 H 0.079 0.921 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.267 1.267 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.335 0.665 39 H 0.026 0.974 40 H -0.021 1.021 41 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 -2.487 -17.203 17.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 C -0.203 4.203 4 C -0.136 4.136 5 C 0.045 3.955 6 H 0.075 0.925 7 O -0.300 6.300 8 C -0.014 4.014 9 C -0.190 4.190 10 C -0.192 4.192 11 C -0.055 4.055 12 H 0.095 0.905 13 N -0.297 5.297 14 C 0.039 3.961 15 C -0.554 4.554 16 H 0.097 0.903 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.704 3.296 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.192 1.192 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.153 0.847 39 H 0.044 0.956 40 H -0.003 1.003 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.684 -2.593 -17.225 17.500 hybrid contribution 1.454 -1.101 0.796 1.990 sum 3.138 -3.694 -16.429 17.129 Atomic orbital electron populations 1.21830 0.95701 1.01419 1.01386 1.21080 0.95186 0.96100 0.98987 1.21873 1.00891 0.96256 1.01328 1.21606 0.92192 1.01127 0.98633 1.22127 0.96118 0.92430 0.84802 0.92452 1.87908 1.21640 1.70379 1.50082 1.22475 0.82308 0.99450 0.97178 1.22166 1.00753 1.00248 0.95853 1.22386 0.98518 1.00104 0.98235 1.22213 0.92553 0.97784 0.92960 0.90487 1.60503 1.53762 1.11564 1.03909 1.20016 0.94402 0.94567 0.87161 1.21055 1.47563 0.96540 0.90216 0.90265 1.24898 0.94768 0.97467 0.96141 1.69898 1.48834 1.34815 1.00329 0.86844 0.78318 0.86265 0.78196 1.20408 1.21118 1.19167 0.92540 0.93304 0.92973 0.91209 0.92891 0.93490 0.92389 0.92044 0.88380 0.89473 0.93656 0.91292 0.91471 0.91912 0.91481 0.84725 0.95601 1.00328 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.19 37.16 0.34 -1.37 16 2 C -0.10 -1.22 2.87 -90.62 -0.26 -1.48 16 3 C -0.15 -1.77 8.95 37.16 0.33 -1.44 16 4 C -0.10 -1.48 4.32 -26.73 -0.12 -1.59 16 5 C 0.10 1.55 2.21 -26.68 -0.06 1.49 16 6 H 0.06 0.85 6.34 -51.93 -0.33 0.52 16 7 O -0.38 -5.54 9.86 -35.23 -0.35 -5.89 16 8 C 0.06 0.74 6.84 37.21 0.25 1.00 16 9 C -0.15 -1.86 6.14 -26.59 -0.16 -2.02 16 10 C -0.15 -2.26 5.28 -26.55 -0.14 -2.40 16 11 C 0.06 0.95 2.08 -67.57 -0.14 0.81 16 12 H 0.08 1.41 7.80 -51.93 -0.41 1.01 16 13 N -0.67 -13.31 5.51 -107.84 -0.59 -13.91 16 14 C 0.17 3.98 4.31 -4.97 -0.02 3.96 16 15 C -0.52 -14.59 9.87 -34.44 -0.34 -14.92 16 16 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 19 Si 0.88 21.62 27.47 -169.99 -4.67 16.96 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 23 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.92 7.70 -51.93 -0.40 0.52 16 27 H 0.05 0.65 6.46 -51.93 -0.34 0.31 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.66 7.54 -51.93 -0.39 1.27 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.88 8.09 -51.92 -0.42 0.46 16 37 H 0.07 1.07 7.57 -51.93 -0.39 0.68 16 38 H 0.34 6.52 8.43 -39.29 -0.33 6.19 16 39 H 0.03 0.64 7.11 -51.93 -0.37 0.28 16 40 H -0.02 -0.50 6.96 -51.93 -0.36 -0.86 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -29.58 316.88 -8.02 -37.60 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -7.55 Total: 3.35 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -0.41 Total: -16.08 kcal Atomic # 7 Polarization: -40.89 SS G_CDS: 0.18 Total: -40.71 kcal Atomic # 8 Polarization: -5.54 SS G_CDS: -0.35 Total: -5.89 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.58 -8.02 -37.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411558723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.752 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds